Prupe.1G369200_v2.0.a1

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012326
Physical Location & Seq
Reverse (-)
33730210 .. 33735751
5542 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G369200.2

Sequence Viewer

Length: 1662 bp
ATGTCTGCGGTCCAAGTGGAGAAGAAGGTCGAGGAGGAGGAGAGTAAGAATGTAGAGAAATCGGGAGAGCTCTTGTTCTGTGGCGGTACGTCTTGGGATGTCATTGGTCGGCGCAAAGGCGCCGTCGAAGGCAACTTGATTTCTCCCACGCGCCTTCGCCCTCTCGTCGGCATCGATATCCGTTTTGTAGCCTCGGGTTGCTCTTCCTGCCATTGTGTGGCATTGGATGTGGAAGGGCGTTGCTATACTTGGGGACGCAATGAGAAGGGGCAGCTGGGTCACGGAGATTCAATTCAGCGTGATAGGCCGACTGTAGTGTCTGAACTTTCAAAGCACAAAGTTGTTAGAGCTGCATCAGGGAGGAGTCATTCTGTAGTGATTACTGAGGATGGGTATTCTTTCGCCTTTGGCTGGAATAAGCATGGACAGCTGGGTTCCGGTTCAGCAAAAAATGAAATTGAGAAATCCCCTGTTCGCTGTCAAGTGTCTGATGTTAAAAATACAGCTTGTGGGGCTGACTTCACGGTGTGGTTATCTTGTGTTGAAGGAGCTTCTATACTGTATGGTCTGCAAACTGCAGGTCTTCCACAGTATGGGCAACTTGGGCATGGTACAGATAATGAGTATAATACTAAAGACAGCTCAGTGAGGCTTGCGTATGAAGCCCAGCCACGCCCTAAAGCAATAACTTCTCTGGCTGGGGAAACCATTGTGAAAGTTGCGTGCGGAACAAATCATACAGTGGCAGTGGATGCAAATGGCTATGTTTATACGTGGGGCTTTGGTGGTTATGGAAGGCTTGGACATAGGGAGCAGAAGGATGAATGGGCTCCTCGTCGTGTTGATGTTTTCCAAAGGCAAAATCTTCTGCCTCCTGATGCAGTTTTATCAGCTGGTTCTGTGAACTCTGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGTAAAATTAAGACCACGGGTGATGACTGGATGTATCCTAAACCACTCATGGATTTAAGTGGCTGGAATTTGCGTTGCATGGATTCAGGCAATATGCACCATTTTGTTGGTGCTGATTCCTCCTGCATAAGTTGGGGTCATGCTCAGTATGGAGAATTGGGATATGGCCCTAATGGACAGAAGTCTTCTGCAGTACCCAAAAAAGTGGAAATTCTTGACGGTATGCATGTTATGAGTGTTGCATGTGGTATGGGCCATTCCATGGTTATTGTTGACAGAACAAATGTTGGTGACCGACTTGACCAGCTTGATGTATATGATGGCAAAGCTTCTGTTGAAGGGAGTGAGGAACCTTTGAGTGGCCCTCCAGTTTCTAAGCAAACCCCTAAAAAGGGTGCTTCTAAGGCAACTCAGAATTCCAAGAGGAAGAAGTCAAAAGATTCTTCTGATTCGGAAGAAGAAGACGACAATGATGGCGACAGTGAGGACGAAGACAGTGATGAAAGTGATGAACAGGTCAATGGCAGGACAGAACCTAAAAGGCAACGGGGAGGGAAGGCTTCTGGTAGAGGTCGAGGCAATGGTGCTAAAAAGGCAGCACCAGCAGAGGGAAAAGGCGCTGGGCGTGGACGGGGCCGCCCTCCTTCCGCAAATAAAAGCCCAAAGCCCGCACAAGGGAAGACTGGTACGGGTAAGAGAGGAAGGCCTCGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

554

Amino Acids

59.3

Weight (kDa)

8.53

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 911
AasI GACNNNNNNGTC 1 cut(s) 316
Acc36I ACCTGC 2 cut(s) 569, 911
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 3 cut(s) 217, 593, 1207
AccII CGCG 1 cut(s) 151
AciI CCGC 6 cut(s) 8, 84, 726, 1582, 1593, 1614
AcsI RAATTY 3 cut(s) 1012, 1155, 1360
AcyI GRCGYC 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 528
AfaI GTAC 5 cut(s) 88, 613, 916, 1140, 1633
AgsI TTSAA 4 cut(s) 291, 330, 545, 1283
Alw21I GWGCWC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 6 cut(s) 305, 1111, 1198, 1306, 1579, 1649
ApeKI GCWGC 3 cut(s) 271, 350, 1541
ApoI RAATTY 3 cut(s) 1012, 1155, 1360
ArsI GACNNNNNNTTYG 4 cut(s) 108, 140, 565, 597
AspLEI GCGC 4 cut(s) 114, 122, 153, 1565
AspS9I GGNCC 5 cut(s) 10, 1112, 1198, 1307, 1579
AsuHPI GGTGA 2 cut(s) 977, 1247
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 72, 832
BbsI GAAGAC 5 cut(s) 575, 1122, 1413, 1443, 1631
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 283, 337, 1553
BccI CCATC 3 cut(s) 383, 1259, 1412
BceAI ACGGC 1 cut(s) 107
BciVI GTATCC 1 cut(s) 990
BfmI CTRYAG 5 cut(s) 312, 372, 576, 918, 1134
BfoI RGCGCY 2 cut(s) 123, 1566
BfuAI ACCTGC 2 cut(s) 569, 911
BfuI GTATCC 1 cut(s) 990
BisI GCNGC 4 cut(s) 272, 351, 1542, 1582
BlsI GCNGC 4 cut(s) 273, 352, 1543, 1583
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 5 cut(s) 10, 1112, 1198, 1307, 1579
BmiI GGNNCC 5 cut(s) 121, 436, 831, 1296, 1580
BmsI GCATC 4 cut(s) 180, 362, 742, 868
BoxI GACNNNNGTC 1 cut(s) 1126
BpiI GAAGAC 5 cut(s) 575, 1122, 1413, 1443, 1631
BplI GAGNNNNNCTC 2 cut(s) 1294, 1326
BpmI CTGGAG 1 cut(s) 1296
Bsa29I ATCGAT 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 192, 960, 1206
BsaWI WCCGGW 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 977, 1313, 1633
Bse3DI GCAATG 2 cut(s) 265, 1531
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 192, 960, 1206
BseGI GGATG 6 cut(s) 103, 232, 394, 757, 826, 981
BseMI GCAATG 2 cut(s) 265, 1531
BseMII CTCAG 4 cut(s) 375, 657, 1103, 1370
BseNI ACTGG 3 cut(s) 977, 1313, 1633
BseRI GAGGAG 5 cut(s) 47, 50, 53, 376, 822
BseXI GCAGC 3 cut(s) 283, 337, 1553
BseYI CCCAGC 5 cut(s) 274, 430, 666, 698, 1565
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 6 cut(s) 307, 1113, 1200, 1308, 1581, 1651
BshNI GGYRCC 1 cut(s) 119
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 6 cut(s) 307, 1113, 1200, 1308, 1581, 1651
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 72, 832
Bsp19I CCATGG 1 cut(s) 1206
BspACI CCGC 6 cut(s) 8, 84, 726, 1582, 1593, 1614
BspANI GGCC 6 cut(s) 307, 1113, 1200, 1308, 1581, 1651
BspCNI CTCAG 4 cut(s) 376, 656, 1102, 1369
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 5 cut(s) 121, 436, 831, 1296, 1580
BspMAI CTGCAG 3 cut(s) 580, 922, 1138
BspMI ACCTGC 2 cut(s) 569, 911
BspQI GCTCTTC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 265, 1531
BsrI ACTGG 3 cut(s) 977, 1313, 1633
BssECI CCNNGG 3 cut(s) 192, 960, 1206
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 1206
Bst4CI ACNGT 8 cut(s) 313, 526, 561, 591, 742, 1166, 1427, 1442
Bst6I CTCTTC 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 752, 917
BstBAI YACGTR 1 cut(s) 774
BstC8I GCNNGC 3 cut(s) 654, 724, 1614
BstDEI CTNAG 6 cut(s) 384, 643, 1089, 1320, 1347, 1356
BstDSI CCRYGG 2 cut(s) 960, 1206
BstEII GGTNACC 1 cut(s) 1235
BstF5I GGATG 6 cut(s) 103, 232, 394, 757, 826, 981
BstFNI CGCG 1 cut(s) 151
BstH2I RGCGCY 2 cut(s) 123, 1566
BstHHI GCGC 4 cut(s) 114, 122, 153, 1565
BstNSI RCATGY 3 cut(s) 915, 1175, 1191
BstPAI GACNNNNGTC 1 cut(s) 1126
BstPI GGTNACC 1 cut(s) 1235
BstSFI CTRYAG 5 cut(s) 312, 372, 576, 918, 1134
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 283, 337, 1553
BstV2I GAAGAC 5 cut(s) 575, 1122, 1413, 1443, 1631
BstXI CCANNNNNNTGG 2 cut(s) 1052, 1150
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 1 cut(s) 990
BsuRI GGCC 6 cut(s) 307, 1113, 1200, 1308, 1581, 1651
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 2 cut(s) 960, 1206
BtsCI GGATG 6 cut(s) 103, 232, 394, 757, 826, 981
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 5 cut(s) 651, 747, 753, 1432, 1447
BveI ACCTGC 2 cut(s) 569, 911
Cac8I GCNNGC 3 cut(s) 654, 724, 1614
CfoI GCGC 4 cut(s) 114, 122, 153, 1565
Cfr13I GGNCC 5 cut(s) 10, 1112, 1198, 1307, 1579
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 264
Csp6I GTAC 5 cut(s) 87, 612, 915, 1139, 1632
CviAII CATG 9 cut(s) 422, 608, 912, 994, 1024, 1085, 1172, 1188, 1207
CviQI GTAC 5 cut(s) 87, 612, 915, 1139, 1632
DdeI CTNAG 6 cut(s) 384, 643, 1089, 1320, 1347, 1356
DinI GGCGCC 1 cut(s) 121
DraIII CACNNNGTG 1 cut(s) 528
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 1206
Eco147I AGGCCT 1 cut(s) 1651
Eco24I GRGCYC 2 cut(s) 72, 832
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 193
Eco91I GGTNACC 1 cut(s) 1235
EcoICRI GAGCTC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 1235
EcoRI GAATTC 1 cut(s) 1360
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 1206
EcoT22I ATGCAT 1 cut(s) 1173
EcoT38I GRGCYC 2 cut(s) 72, 832
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 1206
FaeI CATG 9 cut(s) 425, 611, 915, 997, 1027, 1088, 1175, 1191, 1210
FaqI GGGAC 1 cut(s) 267
FatI CATG 9 cut(s) 421, 607, 911, 993, 1023, 1084, 1171, 1187, 1206
FauI CCCGC 1 cut(s) 1621
Fnu4HI GCNGC 4 cut(s) 272, 351, 1542, 1582
FokI GGATG 6 cut(s) 110, 239, 401, 764, 833, 988
FriOI GRGCYC 2 cut(s) 72, 832
Fsp4HI GCNGC 4 cut(s) 272, 351, 1542, 1582
GlaI GCGC 4 cut(s) 113, 121, 152, 1564
GluI GCNGC 4 cut(s) 272, 351, 1542, 1582
GsaI CCCAGC 5 cut(s) 278, 434, 670, 702, 1569
GsuI CTGGAG 1 cut(s) 1296
HaeII RGCGCY 2 cut(s) 123, 1566
HaeIII GGCC 6 cut(s) 307, 1113, 1200, 1308, 1581, 1651
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 264
HhaI GCGC 4 cut(s) 114, 122, 153, 1565
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 9 cut(s) 425, 611, 915, 997, 1027, 1088, 1175, 1191, 1210
Hin6I GCGC 4 cut(s) 112, 120, 151, 1563
HinP1I GCGC 4 cut(s) 112, 120, 151, 1563
HincII GTYRAC 1 cut(s) 1219
HindII GTYRAC 1 cut(s) 1219
HindIII AAGCTT 1 cut(s) 1272
HinfI GANTC 6 cut(s) 287, 364, 1028, 1061, 1385, 1394
HpaII CCGG 1 cut(s) 438
HphI GGTGA 2 cut(s) 977, 1247
Hpy166II GTNNAC 3 cut(s) 904, 1219, 1574
Hpy188I TCNGA 5 cut(s) 322, 490, 1359, 1393, 1399
Hpy188III TCNNGA 3 cut(s) 63, 875, 1160
Hpy8I GTNNAC 3 cut(s) 904, 1219, 1574
Hpy99I CGWCG 3 cut(s) 128, 170, 840
HpyCH4III ACNGT 8 cut(s) 313, 526, 561, 591, 742, 1166, 1427, 1442
HpyCH4IV ACGT 2 cut(s) 89, 773
HpyF3I CTNAG 6 cut(s) 384, 643, 1089, 1320, 1347, 1356
HpySE526I ACGT 2 cut(s) 89, 773
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 9 cut(s) 425, 611, 915, 997, 1027, 1088, 1175, 1191, 1210
HspAI GCGC 4 cut(s) 112, 120, 151, 1563
KasI GGCGCC 1 cut(s) 119
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 3 cut(s) 548, 811, 835
Lsp1109I GCAGC 3 cut(s) 283, 337, 1553
LweI GCATC 4 cut(s) 180, 362, 742, 868
MaeII ACGT 2 cut(s) 89, 773
MaeIII GTNAC 2 cut(s) 278, 1235
MhlI GDGCHC 2 cut(s) 72, 832
MluCI AATT 7 cut(s) 291, 456, 951, 1012, 1100, 1155, 1360
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 1 cut(s) 373
Mph1103I ATGCAT 1 cut(s) 1173
MseI TTAA 3 cut(s) 495, 954, 1001
MspA1I CMGCKG 3 cut(s) 274, 430, 893
MspI CCGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 151
NarI GGCGCC 1 cut(s) 120
NcoI CCATGG 1 cut(s) 1206
NlaIII CATG 9 cut(s) 425, 611, 915, 997, 1027, 1088, 1175, 1191, 1210
NlaIV GGNNCC 5 cut(s) 121, 436, 831, 1296, 1580
NmuCI GTSAC 2 cut(s) 278, 1235
NsiI ATGCAT 1 cut(s) 1173
NspI RCATGY 3 cut(s) 915, 1175, 1191
PaqCI CACCTGC 1 cut(s) 911
PceI AGGCCT 1 cut(s) 1651
PciSI GCTCTTC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 5 cut(s) 287, 1028, 1061, 1385, 1394
PflMI CCANNNNNTGG 3 cut(s) 217, 593, 1207
PkrI GCNGC 4 cut(s) 273, 352, 1543, 1583
PleI GAGTC 1 cut(s) 372
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 372
Ppu21I YACGTR 1 cut(s) 774
PshAI GACNNNNGTC 1 cut(s) 1126
Psp124BI GAGCTC 1 cut(s) 72
PspEI GGTNACC 1 cut(s) 1235
PspFI CCCAGC 5 cut(s) 274, 430, 666, 698, 1565
PspN4I GGNNCC 5 cut(s) 121, 436, 831, 1296, 1580
PspPI GGNCC 5 cut(s) 10, 1112, 1198, 1307, 1579
PsrI GAACNNNNNNTAC 2 cut(s) 721, 753
PstI CTGCAG 3 cut(s) 580, 922, 1138
PvuII CAGCTG 3 cut(s) 274, 430, 893
RsaI GTAC 5 cut(s) 88, 613, 916, 1140, 1633
RsaNI GTAC 5 cut(s) 87, 612, 915, 1139, 1632
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 3 cut(s) 495, 954, 1001
SatI GCNGC 4 cut(s) 272, 351, 1542, 1582
Sau96I GGNCC 5 cut(s) 10, 1112, 1198, 1307, 1579
SchI GAGTC 1 cut(s) 373
SduI GDGCHC 2 cut(s) 72, 832
SfaNI GCATC 4 cut(s) 180, 362, 742, 868
SfcI CTRYAG 5 cut(s) 312, 372, 576, 918, 1134
SfoI GGCGCC 1 cut(s) 121
SinI GGWCC 1 cut(s) 10
Sse9I AATT 7 cut(s) 291, 456, 951, 1012, 1100, 1155, 1360
SseBI AGGCCT 1 cut(s) 1651
SsiI CCGC 6 cut(s) 8, 84, 726, 1582, 1593, 1614
SspDI GGCGCC 1 cut(s) 119
SstI GAGCTC 1 cut(s) 72
StuI AGGCCT 1 cut(s) 1651
StyI CCWWGG 1 cut(s) 1206
TaaI ACNGT 8 cut(s) 313, 526, 561, 591, 742, 1166, 1427, 1442
TaiI ACGT 2 cut(s) 92, 776
TaqI TCGA 4 cut(s) 30, 126, 174, 1519
TaqII GACCGA 1 cut(s) 1254
TasI AATT 7 cut(s) 291, 456, 951, 1012, 1100, 1155, 1360
TatI WGTACW 1 cut(s) 914
TauI GCSGC 1 cut(s) 1584
TfiI GAWTC 5 cut(s) 287, 1028, 1061, 1385, 1394
Tru1I TTAA 3 cut(s) 495, 954, 1001
Tru9I TTAA 3 cut(s) 495, 954, 1001
TscAI CASTG 5 cut(s) 651, 747, 753, 1432, 1447
TseFI GTSAC 2 cut(s) 278, 1235
TseI GCWGC 3 cut(s) 271, 350, 1541
Tsp45I GTSAC 2 cut(s) 278, 1235
TspDTI ATGAA 5 cut(s) 468, 675, 837, 1461, 1470
TspGWI ACGGA 2 cut(s) 170, 297
TspRI CASTG 5 cut(s) 651, 747, 753, 1432, 1447
Van91I CCANNNNNTGG 3 cut(s) 217, 593, 1207
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 3 cut(s) 1012, 1155, 1360
XceI RCATGY 3 cut(s) 915, 1175, 1191
Zsp2I ATGCAT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.