Rh6CG439400

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012326
Physical Location & Seq
Forward (+)
61933223 .. 61937927
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG439400.1

Sequence Viewer

Length: 1287 bp
ATGTGTAGGTACAAAATTGTTGGAGCTGGATCAGGGAAGAGTCATACTGTAGTGGTTACGGAGGACGGCCATTCTCTGGCCTTTGGCTGGAATAAGCACGGACAGCTGGGTTCAGGCTCGGTAAAAAATGAAATTGAGGCATCCCCTGTTCGCTGTCAAGTTTCTGATGTTAAAACGGCTACCTGTGGTGGTGACTTCACTGTTTGGTTATCTTCTGTTGAAGGAGCTTCTATCCTAACTGCAGGTCTTCCACAGTATGGGCAACTCGGCCATGGAACAGATAATGAGTATAACACTAAAGACAGCTCAGTGAGGCTTGCTTATGAAGCTCAACCACGCCCTAAAGCAATAGCTTCTCTAGCTGGGGAAACCATTGTGAAAGTCGCTTGTGGAACAAACCATACAGTGGCAGTGGATGAAAAGGGCTATGTATATACGTGGGGCTTTGGTGGTTATGGAAGGCTTGGACATAGAGAGCAGAAGGATGAGTGGGCTCCTCGTCGTGTTGATGTTTTCCAGAGGCAAAATATCCTGCCTCCTAATGCAGTTATATCAGCTGGCTCAATGAACTCGGCATGTACTGCAGGTGGAGGACAGTTGTATATGTGGGGTAAAATTAAAAGCACAGGTGATGACTGGATGTATCCTAAACCACTCATGGATTTAAGTGGTTGGAATTTGCGTTGCATGGATTCAGGCGGCATGCATCATTTTGTTGGTGCTGATTCTTCCTGCATAAGTTGGGGCCACGCTCAGTATGGAGAGCTGGGATATGGCCCCAATGGACAGAAGTCTTCTGCGGTACCCAAAAAAGTAGACATTCTTGAGGGTATGCATATTATTAGTGTTGCATGTGGTCAGAACCATTCCATGGTTATTGTTGACAGGACTAATATTGGGGACCAACTTGATCAGCTTGATGTTTATGATGGCAAAGCTTCCTCTGAAGGGAGTGAGGAGCCAGAGAATGAGACTCCAGTAACTAAGCAAGCTCCTAAAAAGAGTGCTGCTAAGGCGTCTAGTAATTCCAAGAGGAAGAAGTCAAAAGAGTCTTCCGAGTCAGAAGATGAAGACGAAGACGAAGACGAAGATGACAATGATGACAGTGAGGAGAGTGATGATGAACAGGTCAACGGCAAGTATTCTAGGCAACGAGGTGGGAAGGCTTCTGGTAGGGGGCGAGGTAATGGTGCTAAACGTGGACGTGGCCGCCCTCCTTCAGCAAGTAAAAGCCCAAAGCCTGCAGCAGGGAAGGCCGGTAAGAGAGGACGGCCTCGCAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

428

Amino Acids

45.85

Weight (kDa)

6.84

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 6 - 173 1.2e-34 RCC1-like domain
RCC1 PF00415 22 - 68 2.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 79 - 138 4.6e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 125 - 153 2.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 141 - 193 8.9e-09 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 183 - 296 3e-13 RCC1-like domain
RCC1 PF00415 246 - 293 4.3e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 2 cut(s) 233, 575
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 4 cut(s) 76, 257, 406, 871
AccI GTMKAC 1 cut(s) 816
AciI CCGC 3 cut(s) 699, 800, 1210
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 3 cut(s) 67, 268, 1207
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 2 cut(s) 966, 1203
AcyI GRCGYC 1 cut(s) 1016
AfaI GTAC 3 cut(s) 11, 580, 804
AfiI CCNNNNNNNGG 7 cut(s) 76, 87, 257, 406, 871, 948, 1247
AgsI TTSAA 1 cut(s) 221
AjiI CACGTC 1 cut(s) 1205
Alw26I GTCTC 1 cut(s) 965
AlwI GGATC 1 cut(s) 37
AoxI GGCC 8 cut(s) 67, 78, 268, 745, 775, 1207, 1254, 1271
ApeKI GCWGC 2 cut(s) 1007, 1244
ApoI RAATTY 1 cut(s) 676
Asp718I GGTACC 1 cut(s) 802
AspS9I GGNCC 3 cut(s) 745, 776, 901
AsuHPI GGTGA 2 cut(s) 203, 641
AvaII GGWCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 1 cut(s) 496
BbsI GAAGAC 6 cut(s) 239, 786, 1044, 1077, 1083, 1089
BbvI GCAGC 2 cut(s) 994, 1256
BccI CCATC 1 cut(s) 923
BceAI ACGGC 3 cut(s) 82, 192, 1150
BciVI GTATCC 1 cut(s) 654
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 965
BfaI CTAG 3 cut(s) 359, 1020, 1146
BfmI CTRYAG 4 cut(s) 48, 240, 582, 1242
BfuAI ACCTGC 2 cut(s) 233, 575
BfuI GTATCC 1 cut(s) 654
BisI GCNGC 4 cut(s) 700, 1008, 1210, 1245
BlsI GCNGC 4 cut(s) 701, 1009, 1211, 1246
Bme18I GGWCC 1 cut(s) 901
BmgBI CACGTC 1 cut(s) 1205
BmgT120I GGNCC 3 cut(s) 745, 776, 901
BmiI GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
BmsI GCATC 2 cut(s) 149, 715
BoxI GACNNNNGTC 1 cut(s) 790
BpiI GAAGAC 6 cut(s) 239, 786, 1044, 1077, 1083, 1089
BpmI CTGGAG 1 cut(s) 960
Bpu10I CCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 271, 870
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 87, 257, 406, 871, 948, 1247
Bse118I RCCGGY 1 cut(s) 1256
Bse1I ACTGG 2 cut(s) 641, 977
BseDI CCNNGG 2 cut(s) 271, 870
BseGI GGATG 4 cut(s) 140, 421, 490, 645
BseLI CCNNNNNNNGG 7 cut(s) 76, 87, 257, 406, 871, 948, 1247
BseMII CTCAG 2 cut(s) 321, 767
BseNI ACTGG 2 cut(s) 641, 977
BseRI GAGGAG 3 cut(s) 486, 971, 1124
BseXI GCAGC 2 cut(s) 994, 1256
BseYI CCCAGC 3 cut(s) 106, 362, 766
BshFI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1209, 1256, 1273
BshNI GGYRCC 1 cut(s) 802
BsiSI CCGG 1 cut(s) 1257
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 7 cut(s) 76, 87, 257, 406, 871, 948, 1247
BsmAI GTCTC 1 cut(s) 965
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1209, 1256, 1273
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 2 cut(s) 29, 910
Bsp19I CCATGG 2 cut(s) 271, 870
BspACI CCGC 3 cut(s) 699, 800, 1210
BspANI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1209, 1256, 1273
BspCNI CTCAG 2 cut(s) 320, 766
BspLI GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
BspMAI CTGCAG 3 cut(s) 244, 586, 1246
BspMI ACCTGC 2 cut(s) 233, 575
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 1256
BsrI ACTGG 2 cut(s) 641, 977
BssAI RCCGGY 1 cut(s) 1256
BssECI CCNNGG 2 cut(s) 271, 870
BssMI GATC 2 cut(s) 29, 910
BssNI GRCGYC 1 cut(s) 1016
BssT1I CCWWGG 2 cut(s) 271, 870
Bst4CI ACNGT 6 cut(s) 49, 202, 255, 406, 597, 1106
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 5 cut(s) 318, 559, 704, 990, 1242
BstDEI CTNAG 4 cut(s) 307, 753, 984, 1011
BstDSI CCRYGG 2 cut(s) 271, 870
BstENI CCTNNNNNAGG 1 cut(s) 1245
BstF5I GGATG 4 cut(s) 140, 421, 490, 645
BstKTI GATC 2 cut(s) 32, 913
BstMAI GTCTC 1 cut(s) 965
BstMBI GATC 2 cut(s) 29, 910
BstMWI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1253
BstNSI RCATGY 3 cut(s) 579, 706, 855
BstPAI GACNNNNGTC 1 cut(s) 790
BstSFI CTRYAG 4 cut(s) 48, 240, 582, 1242
BstV1I GCAGC 2 cut(s) 994, 1256
BstV2I GAAGAC 6 cut(s) 239, 786, 1044, 1077, 1083, 1089
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 8 cut(s) 69, 80, 270, 747, 777, 1209, 1256, 1273
BtgI CCRYGG 2 cut(s) 271, 870
BtrI CACGTC 1 cut(s) 1205
BtsCI GGATG 4 cut(s) 140, 421, 490, 645
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 5 cut(s) 198, 315, 411, 417, 1111
BveI ACCTGC 2 cut(s) 233, 575
Cac8I GCNNGC 5 cut(s) 318, 559, 704, 990, 1242
Cfr10I RCCGGY 1 cut(s) 1256
Cfr13I GGNCC 3 cut(s) 745, 776, 901
CseI GACGC 1 cut(s) 1005
Csp6I GTAC 3 cut(s) 10, 579, 803
CviAII CATG 7 cut(s) 272, 576, 658, 688, 703, 852, 871
CviQI GTAC 3 cut(s) 10, 579, 803
DdeI CTNAG 4 cut(s) 307, 753, 984, 1011
DpnI GATC 2 cut(s) 31, 912
DpnII GATC 2 cut(s) 29, 910
EaeI YGGCCR 3 cut(s) 67, 268, 1207
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 271, 870
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 2 cut(s) 966, 1203
EcoNI CCTNNNNNAGG 1 cut(s) 1245
EcoT14I CCWWGG 2 cut(s) 271, 870
EcoT22I ATGCAT 2 cut(s) 708, 837
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 271, 870
FaeI CATG 7 cut(s) 275, 579, 661, 691, 706, 855, 874
FaqI GGGAC 1 cut(s) 914
FatI CATG 7 cut(s) 271, 575, 657, 687, 702, 851, 870
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 4 cut(s) 700, 1008, 1210, 1245
FokI GGATG 4 cut(s) 127, 428, 497, 652
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 4 cut(s) 700, 1008, 1210, 1245
FspBI CTAG 3 cut(s) 359, 1020, 1146
GluI GCNGC 4 cut(s) 700, 1008, 1210, 1245
GsaI CCCAGC 3 cut(s) 110, 366, 770
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 8 cut(s) 69, 80, 270, 747, 777, 1209, 1256, 1273
HapII CCGG 1 cut(s) 1257
HgaI GACGC 1 cut(s) 1005
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 7 cut(s) 275, 579, 661, 691, 706, 855, 874
HincII GTYRAC 2 cut(s) 883, 1132
HindII GTYRAC 2 cut(s) 883, 1132
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 6 cut(s) 40, 692, 725, 973, 1049, 1058
HpaII CCGG 1 cut(s) 1257
HphI GGTGA 2 cut(s) 203, 641
Hpy166II GTNNAC 4 cut(s) 817, 883, 1132, 1202
Hpy188I TCNGA 5 cut(s) 166, 861, 946, 1057, 1063
Hpy188III TCNNGA 2 cut(s) 517, 824
Hpy8I GTNNAC 4 cut(s) 817, 883, 1132, 1202
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 7 cut(s) 215, 453, 475, 941, 1156, 1227, 1246
HpyCH4III ACNGT 6 cut(s) 49, 202, 255, 406, 597, 1106
HpyCH4IV ACGT 3 cut(s) 437, 1198, 1204
HpyCH4V TGCA 9 cut(s) 242, 545, 584, 687, 706, 735, 835, 851, 1244
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1253
HpyF3I CTNAG 4 cut(s) 307, 753, 984, 1011
HpySE526I ACGT 3 cut(s) 437, 1198, 1204
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 7 cut(s) 275, 579, 661, 691, 706, 855, 874
KpnI GGTACC 1 cut(s) 806
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 29, 910
LmnI GCTCC 5 cut(s) 23, 224, 499, 958, 997
Lsp1109I GCAGC 2 cut(s) 994, 1256
LweI GCATC 2 cut(s) 149, 715
MaeI CTAG 3 cut(s) 359, 1020, 1146
MaeII ACGT 3 cut(s) 437, 1198, 1204
MaeIII GTNAC 3 cut(s) 55, 191, 979
MalI GATC 2 cut(s) 31, 912
MboI GATC 2 cut(s) 29, 910
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 5 cut(s) 15, 132, 615, 676, 1024
MlyI GAGTC 4 cut(s) 49, 967, 1058, 1067
MmeI TCCRAC 1 cut(s) 653
Mph1103I ATGCAT 2 cut(s) 708, 837
MseI TTAA 3 cut(s) 171, 618, 665
MspA1I CMGCKG 2 cut(s) 106, 557
MspI CCGG 1 cut(s) 1257
MwoI GCNNNNNNNGC 6 cut(s) 103, 326, 359, 581, 1013, 1253
NcoI CCATGG 2 cut(s) 271, 870
NdeII GATC 2 cut(s) 29, 910
NlaIII CATG 7 cut(s) 275, 579, 661, 691, 706, 855, 874
NlaIV GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
NmeAIII GCCGAG 2 cut(s) 246, 551
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 2 cut(s) 708, 837
NspI RCATGY 3 cut(s) 579, 706, 855
PaeI GCATGC 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 575
PfeI GAWTC 2 cut(s) 692, 725
PflMI CCANNNNNTGG 4 cut(s) 76, 257, 406, 871
PkrI GCNGC 4 cut(s) 701, 1009, 1211, 1246
PleI GAGTC 4 cut(s) 48, 967, 1057, 1066
PpsI GAGTC 4 cut(s) 48, 967, 1057, 1066
Ppu21I YACGTR 1 cut(s) 438
PshAI GACNNNNGTC 1 cut(s) 790
PspFI CCCAGC 3 cut(s) 106, 362, 766
PspN4I GGNNCC 6 cut(s) 495, 746, 778, 804, 902, 960
PspPI GGNCC 3 cut(s) 745, 776, 901
PsrI GAACNNNNNNTAC 2 cut(s) 385, 417
PstI CTGCAG 3 cut(s) 244, 586, 1246
PvuII CAGCTG 2 cut(s) 106, 557
RsaI GTAC 3 cut(s) 11, 580, 804
RsaNI GTAC 3 cut(s) 10, 579, 803
SaqAI TTAA 3 cut(s) 171, 618, 665
SatI GCNGC 4 cut(s) 700, 1008, 1210, 1245
Sau3AI GATC 2 cut(s) 29, 910
Sau96I GGNCC 3 cut(s) 745, 776, 901
SchI GAGTC 4 cut(s) 49, 967, 1058, 1067
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 2 cut(s) 149, 715
SfcI CTRYAG 4 cut(s) 48, 240, 582, 1242
SinI GGWCC 1 cut(s) 901
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SphI GCATGC 1 cut(s) 706
Sse9I AATT 5 cut(s) 15, 132, 615, 676, 1024
SsiI CCGC 3 cut(s) 699, 800, 1210
SspI AATATT 1 cut(s) 895
SspMI CTAG 3 cut(s) 359, 1020, 1146
StyI CCWWGG 2 cut(s) 271, 870
TaaI ACNGT 6 cut(s) 49, 202, 255, 406, 597, 1106
TaiI ACGT 3 cut(s) 440, 1201, 1207
TasI AATT 5 cut(s) 15, 132, 615, 676, 1024
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 702, 1212
TfiI GAWTC 2 cut(s) 692, 725
Tru1I TTAA 3 cut(s) 171, 618, 665
Tru9I TTAA 3 cut(s) 171, 618, 665
TscAI CASTG 5 cut(s) 205, 315, 411, 417, 1111
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 1007, 1244
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 6 cut(s) 144, 339, 432, 581, 1083, 1137
TspGWI ACGGA 2 cut(s) 74, 114
TspRI CASTG 5 cut(s) 205, 315, 411, 417, 1111
Van91I CCANNNNNTGG 4 cut(s) 76, 257, 406, 871
VpaK11BI GGWCC 1 cut(s) 901
XagI CCTNNNNNAGG 1 cut(s) 1245
XapI RAATTY 1 cut(s) 676
XceI RCATGY 3 cut(s) 579, 706, 855
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 3 cut(s) 359, 1020, 1146
Zsp2I ATGCAT 2 cut(s) 708, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.