Rmu_sc0003633.1_g000040

Protein RCC2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003633.1
OG0012326
Physical Location & Seq
Forward (+)
135583 .. 139743
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003633.1_g000040.1.cds

Sequence Viewer

Length: 1605 bp
atgtctgcggtcgaggcggagaagaaggtggaggacgggactaacaaggctgagaaatcgggagagcttttgttctgcggcggcacttcttgggatatacttggccgccgcaaaggcgccgtggaagggaacctggtctctccgactcgcctccggcctctagtcggcattagtatccggtacatcgcctccggctgcgcttcgtgtcattgtgtggcattggatgtggaagggcggtgctatacttggggacgaaatgagaaggggcagctgggtcatggagataaacttcagcgtgataggccgactgtagtgtctgaactttcaaagtacaaaattgttggagctggatcagggaagagtcatactgtagtggttacggaggacggccattctctggcctttggctggaataagcacggacagctgggttcaggctcggtaaaaaatgaaattgaggcatcccctgttcgctgtcaagtttctgatgttaaaatggctacctgtggcggtgacttcactgtttggttatcttctgttgaaggagcttctatcctaactgcaggtcttccacagtatgggcaactcggccatggaacagataatgagtataacactaaagacagctcagtgaggcttgcttatgaagctcaaccacgccctaaagcaatagcttctctagctggggaaaccattgtgaaagttgcttgtggaacaaaccatacagtggcagtggatgaaaagggctatgtatatacgtggggctttggtggttatggaaggcttggacatagagagcagaaggatgagtgggctcctcgtcgtgttgatgttttccagaggcaaaatattctacctcctaatgcagttatatcagctggctcaatgaactcggcttgtactgcaggtggaggacagttgtatatgtggggtaaaattaaaagcacaggtgatgactggatgtatcctaaaccactcatggatttaagtggttggaatttgcgttgcatggattcaggcggcatgcaccattttgttggtgctgattcttcctgcataagttggggccacgctcagtatggagagcttggatatggccccaatggacagaagtcttctgcggtacccaaaaaagtagacattcttgagggtatgcatgttattagtgttgcatgtggtcagaaccattccatggttattgttgacaggactaatattggggaccaacttgatcagcttgatgtttatgatggcaaagcttcctctgaagggagtgaggagccagagaatgagactccagtaactaagcaagctcctaaaaagagtgctgctaaggcgtctagtaattccaagaggaagaagtcaaaagagtcttccgagtcagaagatgaagatgaagacgaagacgaagatgacaatgacagtgaggagagtgatgatgaacaggtcaacggcaagtattctaggcaacgaggtgggaaggcttctggtagggggcgaggtaatggtgctaaacgtggacgtggccgccctccttcagcaagtaaaagcccaaagcctgcagcagggaaggccggtaagagaggaaggcctcgcaagtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

534

Amino Acids

57.25

Weight (kDa)

7.89

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19880
fragaria_vesca FvH4_2g38830 FvH4_2g38830
malus_domestica MD08G1015900.v1.1 MD15G1014900.v1.1
prunus_persica Prupe.1G369200_v2.0.a1 Prupe.1G369200_v2.0.a1
pyrus_communis pycom08g01390 pycom15g01290
rosa_chinensis RchiOBHm_Chr6g0302441
rosa_laevigata RLG00000011171
rosa_multiflora Rmu_sc0003633.1_g000040
rosa_roxburghii Rroxscaffold_7G00165780
rosa_rugosa Rorug06G0314300
rosa_samantha Rh6AG427200 Rh6BG475500 Rh6CG439400 Rh6DG426400
rosa_wichuraiana Rw6G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 896
AasI GACNNNNNNGTC 1 cut(s) 313
Acc36I ACCTGC 2 cut(s) 554, 896
Acc65I GGTACC 1 cut(s) 1123
AccB1I GGYRCC 2 cut(s) 116, 1123
AccB7I CCANNNNNTGG 4 cut(s) 397, 578, 727, 1192
AccI GTMKAC 1 cut(s) 1137
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 4 cut(s) 103, 388, 589, 1525
AcsI RAATTY 1 cut(s) 997
AcuI CTGAAG 3 cut(s) 275, 1287, 1521
AcyI GRCGYC 2 cut(s) 117, 1337
AfaI GTAC 4 cut(s) 182, 332, 901, 1125
AfiI CCNNNNNNNGG 9 cut(s) 126, 164, 397, 408, 578, 727, 1192, 1269, 1565
AgsI TTSAA 2 cut(s) 327, 542
AjiI CACGTC 1 cut(s) 1523
AjnI CCWGG 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 142, 1286
AlwI GGATC 1 cut(s) 358
ApeKI GCWGC 4 cut(s) 195, 268, 1328, 1562
ApoI RAATTY 1 cut(s) 997
Asp718I GGTACC 1 cut(s) 1123
AspLEI GCGC 2 cut(s) 119, 200
AspS9I GGNCC 3 cut(s) 1066, 1097, 1222
AsuHPI GGTGA 2 cut(s) 524, 962
AvaII GGWCC 1 cut(s) 1222
BanI GGYRCC 2 cut(s) 116, 1123
BanII GRGCYC 1 cut(s) 817
BbsI GAAGAC 5 cut(s) 560, 1107, 1365, 1404, 1410
BbvI GCAGC 4 cut(s) 182, 280, 1315, 1574
BccI CCATC 1 cut(s) 1244
BceAI ACGGC 3 cut(s) 104, 403, 1468
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 2 cut(s) 185, 975
BclI TGATCA 1 cut(s) 1231
BcoDI GTCTC 2 cut(s) 142, 1286
BfaI CTAG 4 cut(s) 161, 680, 1341, 1464
BfmI CTRYAG 5 cut(s) 309, 369, 561, 903, 1560
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 2 cut(s) 554, 896
BfuI GTATCC 2 cut(s) 185, 975
BglI GCCNNNNNGGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 1222
BmgBI CACGTC 1 cut(s) 1523
BmgT120I GGNCC 3 cut(s) 1066, 1097, 1222
BmiI GGNNCC 8 cut(s) 118, 131, 816, 1067, 1099, 1125, 1223, 1281
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 470
BoxI GACNNNNGTC 1 cut(s) 1111
BpiI GAAGAC 5 cut(s) 560, 1107, 1365, 1404, 1410
BpmI CTGGAG 1 cut(s) 1281
Bpu10I CCTNAGC 1 cut(s) 1332
BpuEI CTTGAG 1 cut(s) 1166
BsaAI YACGTR 1 cut(s) 759
BsaHI GRCGYC 2 cut(s) 117, 1337
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 120, 592, 1191
BsaWI WCCGGW 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 9 cut(s) 126, 164, 397, 408, 578, 727, 1192, 1269, 1565
Bse118I RCCGGY 1 cut(s) 1574
Bse1I ACTGG 2 cut(s) 962, 1298
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 120, 592, 1191
BseGI GGATG 5 cut(s) 229, 461, 742, 811, 966
BseLI CCNNNNNNNGG 9 cut(s) 126, 164, 397, 408, 578, 727, 1192, 1269, 1565
BseMII CTCAG 3 cut(s) 42, 642, 1088
BseNI ACTGG 2 cut(s) 962, 1298
BseRI GAGGAG 3 cut(s) 807, 1292, 1442
BseXI GCAGC 4 cut(s) 182, 280, 1315, 1574
BseYI CCCAGC 3 cut(s) 271, 427, 683
Bsh1285I CGRYCG 1 cut(s) 12
BshNI GGYRCC 2 cut(s) 116, 1123
BsiEI CGRYCG 1 cut(s) 12
BsiSI CCGG 4 cut(s) 154, 178, 192, 1575
BslFI GGGAC 3 cut(s) 52, 264, 1235
BslI CCNNNNNNNGG 9 cut(s) 126, 164, 397, 408, 578, 727, 1192, 1269, 1565
BsmAI GTCTC 2 cut(s) 142, 1286
BsmFI GGGAC 3 cut(s) 52, 264, 1235
Bso31I GGTCTC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 2 cut(s) 350, 1231
Bsp19I CCATGG 2 cut(s) 592, 1191
BspCNI CTCAG 3 cut(s) 43, 641, 1087
BspLI GGNNCC 8 cut(s) 118, 131, 816, 1067, 1099, 1125, 1223, 1281
BspMAI CTGCAG 3 cut(s) 565, 907, 1564
BspMI ACCTGC 2 cut(s) 554, 896
BspPI GGATC 1 cut(s) 358
BspT107I GGYRCC 2 cut(s) 116, 1123
BspTNI GGTCTC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 1574
BsrI ACTGG 2 cut(s) 962, 1298
BssAI RCCGGY 1 cut(s) 1574
BssECI CCNNGG 3 cut(s) 120, 592, 1191
BssMI GATC 2 cut(s) 350, 1231
BssNI GRCGYC 2 cut(s) 117, 1337
BssT1I CCWWGG 2 cut(s) 592, 1191
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 7 cut(s) 310, 370, 523, 576, 727, 918, 1424
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 2 cut(s) 117, 1337
BstBAI YACGTR 1 cut(s) 759
BstC8I GCNNGC 5 cut(s) 639, 880, 1025, 1311, 1560
BstDEI CTNAG 5 cut(s) 51, 628, 1074, 1305, 1332
BstDSI CCRYGG 3 cut(s) 120, 592, 1191
BstENI CCTNNNNNAGG 1 cut(s) 1563
BstF5I GGATG 5 cut(s) 229, 461, 742, 811, 966
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 2 cut(s) 119, 200
BstKTI GATC 2 cut(s) 353, 1234
BstMAI GTCTC 2 cut(s) 142, 1286
BstMBI GATC 2 cut(s) 350, 1231
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 9 cut(s) 14, 114, 301, 424, 647, 680, 902, 1334, 1571
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 3 cut(s) 1027, 1160, 1176
BstPAI GACNNNNGTC 1 cut(s) 1111
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 5 cut(s) 309, 369, 561, 903, 1560
BstV1I GCAGC 4 cut(s) 182, 280, 1315, 1574
BstV2I GAAGAC 5 cut(s) 560, 1107, 1365, 1404, 1410
BstXI CCANNNNNNTGG 1 cut(s) 1037
BsuI GTATCC 2 cut(s) 185, 975
BtgI CCRYGG 3 cut(s) 120, 592, 1191
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 1523
BtsCI GGATG 5 cut(s) 229, 461, 742, 811, 966
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 5 cut(s) 519, 636, 732, 738, 1429
BveI ACCTGC 2 cut(s) 554, 896
Cac8I GCNNGC 5 cut(s) 639, 880, 1025, 1311, 1560
CfoI GCGC 2 cut(s) 119, 200
Cfr10I RCCGGY 1 cut(s) 1574
Cfr13I GGNCC 3 cut(s) 1066, 1097, 1222
CseI GACGC 1 cut(s) 1326
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 4 cut(s) 181, 331, 900, 1124
CviAII CATG 8 cut(s) 278, 593, 979, 1009, 1024, 1157, 1173, 1192
CviQI GTAC 4 cut(s) 181, 331, 900, 1124
DdeI CTNAG 5 cut(s) 51, 628, 1074, 1305, 1332
DinI GGCGCC 1 cut(s) 118
DpnI GATC 2 cut(s) 352, 1233
DpnII GATC 2 cut(s) 350, 1231
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 4 cut(s) 103, 388, 589, 1525
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 592, 1191
Eco147I AGGCCT 1 cut(s) 1591
Eco24I GRGCYC 1 cut(s) 817
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 1222
Eco57I CTGAAG 3 cut(s) 275, 1287, 1521
EcoNI CCTNNNNNAGG 1 cut(s) 1563
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 592, 1191
EcoT22I ATGCAT 1 cut(s) 1158
EcoT38I GRGCYC 1 cut(s) 817
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 2 cut(s) 592, 1191
FaeI CATG 8 cut(s) 281, 596, 982, 1012, 1027, 1160, 1176, 1195
FaqI GGGAC 3 cut(s) 52, 264, 1235
FatI CATG 8 cut(s) 277, 592, 978, 1008, 1023, 1156, 1172, 1191
FbaI TGATCA 1 cut(s) 1231
FblI GTMKAC 1 cut(s) 1137
FokI GGATG 5 cut(s) 236, 448, 749, 818, 973
FriOI GRGCYC 1 cut(s) 817
FspBI CTAG 4 cut(s) 161, 680, 1341, 1464
GlaI GCGC 2 cut(s) 118, 199
GsaI CCCAGC 3 cut(s) 275, 431, 687
GsuI CTGGAG 1 cut(s) 1281
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 4 cut(s) 154, 178, 192, 1575
HgaI GACGC 1 cut(s) 1326
HhaI GCGC 2 cut(s) 119, 200
Hin1I GRCGYC 2 cut(s) 117, 1337
Hin1II CATG 8 cut(s) 281, 596, 982, 1012, 1027, 1160, 1176, 1195
Hin6I GCGC 2 cut(s) 117, 198
HinP1I GCGC 2 cut(s) 117, 198
HincII GTYRAC 2 cut(s) 1204, 1450
HindII GTYRAC 2 cut(s) 1204, 1450
HindIII AAGCTT 1 cut(s) 1257
HinfI GANTC 7 cut(s) 145, 361, 1013, 1046, 1294, 1370, 1379
HpaII CCGG 4 cut(s) 154, 178, 192, 1575
HphI GGTGA 2 cut(s) 524, 962
Hpy166II GTNNAC 4 cut(s) 1138, 1204, 1450, 1520
Hpy188I TCNGA 7 cut(s) 144, 319, 487, 1182, 1267, 1378, 1384
Hpy188III TCNNGA 3 cut(s) 60, 838, 1145
Hpy8I GTNNAC 4 cut(s) 1138, 1204, 1450, 1520
Hpy99I CGWCG 1 cut(s) 825
HpyCH4III ACNGT 7 cut(s) 310, 370, 523, 576, 727, 918, 1424
HpyCH4IV ACGT 3 cut(s) 758, 1516, 1522
HpyCH4V TGCA 9 cut(s) 563, 866, 905, 1008, 1027, 1056, 1156, 1172, 1562
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 114, 301, 424, 647, 680, 902, 1334, 1571
HpyF3I CTNAG 5 cut(s) 51, 628, 1074, 1305, 1332
HpySE526I ACGT 3 cut(s) 758, 1516, 1522
Hsp92I GRCGYC 2 cut(s) 117, 1337
Hsp92II CATG 8 cut(s) 281, 596, 982, 1012, 1027, 1160, 1176, 1195
HspAI GCGC 2 cut(s) 117, 198
KasI GGCGCC 1 cut(s) 116
KpnI GGTACC 1 cut(s) 1127
Ksp22I TGATCA 1 cut(s) 1231
Kzo9I GATC 2 cut(s) 350, 1231
LmnI GCTCC 5 cut(s) 344, 545, 820, 1279, 1318
Lsp1109I GCAGC 4 cut(s) 182, 280, 1315, 1574
LweI GCATC 1 cut(s) 470
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 4 cut(s) 161, 680, 1341, 1464
MaeII ACGT 3 cut(s) 758, 1516, 1522
MaeIII GTNAC 3 cut(s) 376, 512, 1300
MalI GATC 2 cut(s) 352, 1233
MboI GATC 2 cut(s) 350, 1231
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 5 cut(s) 336, 453, 936, 997, 1345
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 5 cut(s) 139, 370, 1288, 1379, 1388
MmeI TCCRAC 3 cut(s) 167, 322, 974
Mph1103I ATGCAT 1 cut(s) 1158
MseI TTAA 3 cut(s) 492, 939, 986
MspA1I CMGCKG 3 cut(s) 271, 427, 878
MspI CCGG 4 cut(s) 154, 178, 192, 1575
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 9 cut(s) 14, 114, 301, 424, 647, 680, 902, 1334, 1571
NarI GGCGCC 1 cut(s) 117
NcoI CCATGG 2 cut(s) 592, 1191
NdeII GATC 2 cut(s) 350, 1231
NlaIII CATG 8 cut(s) 281, 596, 982, 1012, 1027, 1160, 1176, 1195
NlaIV GGNNCC 8 cut(s) 118, 131, 816, 1067, 1099, 1125, 1223, 1281
NmeAIII GCCGAG 2 cut(s) 567, 872
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 1 cut(s) 1158
NspI RCATGY 3 cut(s) 1027, 1160, 1176
PaeI GCATGC 1 cut(s) 1027
PaqCI CACCTGC 1 cut(s) 896
PceI AGGCCT 1 cut(s) 1591
PfeI GAWTC 2 cut(s) 1013, 1046
PflMI CCANNNNNTGG 4 cut(s) 397, 578, 727, 1192
PleI GAGTC 5 cut(s) 139, 369, 1288, 1378, 1387
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 5 cut(s) 139, 369, 1288, 1378, 1387
Ppu21I YACGTR 1 cut(s) 759
PshAI GACNNNNGTC 1 cut(s) 1111
Psp6I CCWGG 1 cut(s) 132
PspFI CCCAGC 3 cut(s) 271, 427, 683
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 8 cut(s) 118, 131, 816, 1067, 1099, 1125, 1223, 1281
PspPI GGNCC 3 cut(s) 1066, 1097, 1222
PsrI GAACNNNNNNTAC 2 cut(s) 706, 738
PstI CTGCAG 3 cut(s) 565, 907, 1564
PvuII CAGCTG 3 cut(s) 271, 427, 878
RsaI GTAC 4 cut(s) 182, 332, 901, 1125
RsaNI GTAC 4 cut(s) 181, 331, 900, 1124
SaqAI TTAA 3 cut(s) 492, 939, 986
Sau3AI GATC 2 cut(s) 350, 1231
Sau96I GGNCC 3 cut(s) 1066, 1097, 1222
SchI GAGTC 5 cut(s) 139, 370, 1288, 1379, 1388
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 817
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 5 cut(s) 309, 369, 561, 903, 1560
SfoI GGCGCC 1 cut(s) 118
SinI GGWCC 1 cut(s) 1222
SmlI CTYRAG 1 cut(s) 1145
SmoI CTYRAG 1 cut(s) 1145
SphI GCATGC 1 cut(s) 1027
Sse9I AATT 5 cut(s) 336, 453, 936, 997, 1345
SseBI AGGCCT 1 cut(s) 1591
SspDI GGCGCC 1 cut(s) 116
SspI AATATT 2 cut(s) 850, 1216
SspMI CTAG 4 cut(s) 161, 680, 1341, 1464
StuI AGGCCT 1 cut(s) 1591
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 592, 1191
TaaI ACNGT 7 cut(s) 310, 370, 523, 576, 727, 918, 1424
TaiI ACGT 3 cut(s) 761, 1519, 1525
TaqI TCGA 1 cut(s) 12
TasI AATT 5 cut(s) 336, 453, 936, 997, 1345
TatI WGTACW 2 cut(s) 330, 899
TauI GCSGC 6 cut(s) 81, 84, 108, 111, 1023, 1530
TfiI GAWTC 2 cut(s) 1013, 1046
Tru1I TTAA 3 cut(s) 492, 939, 986
Tru9I TTAA 3 cut(s) 492, 939, 986
TscAI CASTG 5 cut(s) 526, 636, 732, 738, 1429
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 4 cut(s) 195, 268, 1328, 1562
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 7 cut(s) 465, 660, 753, 902, 1404, 1410, 1455
TspGWI ACGGA 2 cut(s) 395, 435
TspRI CASTG 5 cut(s) 526, 636, 732, 738, 1429
Van91I CCANNNNNTGG 4 cut(s) 397, 578, 727, 1192
VpaK11BI GGWCC 1 cut(s) 1222
XagI CCTNNNNNAGG 1 cut(s) 1563
XapI RAATTY 1 cut(s) 997
XceI RCATGY 3 cut(s) 1027, 1160, 1176
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XmiI GTMKAC 1 cut(s) 1137
XspI CTAG 4 cut(s) 161, 680, 1341, 1464
Zsp2I ATGCAT 1 cut(s) 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.