FvH4_2g39050

TPR repeat-containing protein At1g05150-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013419
Physical Location & Seq
Reverse (-)
28128465 .. 28130867
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39050.t1

Sequence Viewer

Length: 2403 bp
ATGGCGACGAGAGGGAGCAGATCAGAGAAGGTGAAGCGGATTTTCTACCAATTCGACGTCAACCACGACGGCGGTCTCAACCGTGAGGAAATGGCCGCCCTCGTCGTCGCCGTAAACCCTAGGGTCAAGTTCAGCGACGAGCAGATCAATGCCATTTTGGACGAGGTCTTCCGCACCTACGGCGACTTCATCGACGGCGAGAAGGGACTCACCTACGAGGGGCTGTTGCGGACCTACGACGACGGCGCCGGCGACGTCGACCGCGACTTCGACGCGCTTGGCCTGGAGCTAAGTCTGGATGAGGTTAAAGGAGCCTCCATGGCCTCCGAGGCGTCGTCGTCGTCGATAGTGGACGAGCGAGTCGGCGAGTCGCAGAAGAAGCAGCGGACGGCGGCGTGGGCGGTGTCGCCGAACCACGGGATCGTGTTTGATGACACGTGGAAGATTGTGGATGATTTGGAGATTTTGGTGAAGAGGTTGAAGGCGAAGCAGGCGGGGAGTAATGGCAAGGTGAAGGGTGAGAATTTGGACTCGTATTCGGAGGCCGGGTGGTCTAGAGAATTGGGGCCTTCTTCGGAGATTTCGGAGAAGAGAGTGTATTGGGAGGAGTCCGGGCATGATTATGCTCTGTTTGTGAAGGAATTGGGTGTGATGAGGAGCCGTGCCGACGGGGCTAGGTCGAGGGAGCAGGCTTTCGATGGGCATATGGCCATTGGGAGGGTTTTATATGAGCATCAGTTGTTTAAAGAGGCTTTGGTTAGTTTCAAGAGGGCTTGCGAGTTGCAGCCGGTGGATGTTAGGCCACATTTCAGAGCCGGAAATTGTTTGTATGTTCTTGGCAGGTATAAGGAGTCGAAAGAGGAGTTTTTGTTGGCGCTGGAAGCAGCGGAGGCCGGTGGGAATCAGTGGGCGTATTTGCTTCCGCAGATTTATGTGAATTTGGGGATTTCTCTTGAAGGTGAAGGTATGGTTTTAAGTGCTTGTGAGTATTATAGAGAGGCTGCTATACTTTGTCCGACTCATTTTAGAGCCTTGAAGCTTTTGGGAAGTGCTCTATTTGGGGTTGGGGAGTATAGGGCGGCTGTTAAAGCCTTGGAAGAGTCCATTTTCATGAAACCGGACTATGCTGATGCACATTGTGATTTGGCTTCGGCATTGCATGCTTTGGGCGAGGATGAGAGGGCGATTGAGGTTTTTCAGAAAGCCATTGATTTGAAACCTGGCCATGTTGATGCCTTGTACAATCTGGGTGGGCTTTATATGGACTTGGGAAGGTTCCAGAGAGCTTCGGAGATGTATACTAGGGTTTTAGCTGTGTGGCCCAACCATTGGCGTGCTCAGCTTAACAGGGCTGTGTCATTGTTGGGAGCTAAGGAAACTGAGGATGCTAAGAAAGCTTTGAAGGAAGCATTGAAAATGACCAACAGGGTTGAATTGCATGATGCCATTGCACATTTGAAGCAGCTGCAGAAGAAGAAGGTGAAGGCAAATGGGGGTAACAATGGGGAAACTTCCTTTGTCACTGTGGAAGCTACAAAATTTAAGGCAGTCGGGGAGAAGACAACATTGAGGCAAGACTTGGCCATTGCACTTGAGATTAGGGCATTTCAGAGGATTACCAGGTTGAGTCGTTGTGATGTGGATCTCCTTAAAAAGGAGATGAGTGATGGTGACGTACCAGTGTCGTATTCAGGTACTGGTGCTCCGCAGAGGTCCATACGGAAGCCTAATCTGGAAGAAATTCTTCGTAGGTTGCTTACTTTCCTAAAGCCTGAGACGTTTCAAGGAGCTGTGAAAGCCATAAACGAGAGGATACTCTCTGTTTTTGATGATACAGGTGCAGGTAGGGTGGACTTGGGCATGTTTTTTGCTGTTCTAGCCCCTATTTGCAGTGGCTCGCCAGAAAAGCGCAAGCGAGTTGCTTTTGATGCGCTTTTGTGGCGCCCTGTGAATGAAGGTGGTGGTGCTCAGATAAGAAAATCTGACGCAACTAAATATATTAAACTGTTGAGAGCTATATATGTCCCTTCCCATGGGGTTAGTGAGATGCTAGAACTCCATGGAGAAACAGATCCTTCAACAATGTCTTACACAGAGTTTCTAGTCATGTTCGATGACCCTGATTGGGGTTTTGGTATCATGTCCACACTGTTGAAGCTTGAAACTGGGGATAGGAATCGCCATGGTAATCATGTCTGTTCAGTTTGCCGCTATCCAATTATTGGGTCTCGCTTTAAGGAGATAAAATCTCATTTCAGTTTGTGCAATCAATGCTACAGCGAGGGAAAGGTTCCTCCTGCCAATAAGCAGGAAGAATACAGATTCAGAGAGTATGGAACTGAGAGTGAAGCCATGAAAGACAAGTGCAAGTGCTTTAATTTGCAATCCCATAATGACCTGTAG

Protein Analysis

801

Amino Acids

89.57

Weight (kDa)

6.24

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 348 - 408 3e-10 Tetratricopeptide repeat
TPR_11 PF13414 385 - 424 5.2e-08 TPR repeat
TPR_19 PF14559 394 - 437 4.6e-07 Tetratricopeptide repeat
TPR_1 PF00515 411 - 443 3.2e-06 Tetratricopeptide repeat
TPR_12 PF13424 412 - 474 1.4e-06 Tetratricopeptide repeat
TPR_16 PF13432 414 - 472 4.8e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05150 AT2G32450
fragaria_vesca FvH4_2g39050
malus_domestica MD08G1018000.v1.1 MD15G1017300.v1.1
prunus_persica Prupe.1G370600_v2.0.a1
pyrus_communis pycom08g01560 pycom15g01520
rosa_chinensis RchiOBHm_Chr6g0302151
rosa_laevigata RLG00000011191
rosa_multiflora Rmu_ssc0000160.1_g000016
rosa_roxburghii Rroxscaffold_7G00166040
rosa_rugosa Rorug06G0312600
rosa_samantha Rh6AG425100 Rh6BG477300 Rh6CG438000 Rh6DG425000
rosa_wichuraiana Rw6G036820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AatII GACGTC 2 cut(s) 60, 258
Acc36I ACCTGC 2 cut(s) 831, 1832
AccB1I GGYRCC 2 cut(s) 245, 1941
AccB7I CCANNNNNTGG 2 cut(s) 1329, 2222
AccI GTMKAC 2 cut(s) 258, 1298
AccII CGCG 2 cut(s) 264, 275
AclWI GGATC 3 cut(s) 428, 1650, 2066
AcoI YGGCCR 4 cut(s) 93, 708, 1222, 1581
AcsI RAATTY 4 cut(s) 523, 937, 1538, 1740
AcvI CACGTG 1 cut(s) 438
AcyI GRCGYC 5 cut(s) 57, 246, 255, 332, 1942
AdeI CACNNNGTG 1 cut(s) 1139
AfaI GTAC 3 cut(s) 1241, 1677, 1696
AfiI CCNNNNNNNGG 9 cut(s) 219, 416, 717, 1329, 1654, 2033, 2125, 2126, 2222
AflIII ACRYGT 1 cut(s) 435
AjnI CCWGG 3 cut(s) 282, 1219, 1619
Alw21I GWGCWC 4 cut(s) 1054, 1339, 1705, 1969
Alw26I GTCTC 3 cut(s) 80, 1769, 2232
AlwI GGATC 3 cut(s) 428, 1650, 2066
AlwNI CAGNNNCTG 1 cut(s) 1697
ApeKI GCWGC 6 cut(s) 382, 784, 884, 1001, 1462, 1465
ApoI RAATTY 4 cut(s) 523, 937, 1538, 1740
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 2 cut(s) 1740, 1743
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 6 cut(s) 248, 277, 877, 1911, 1933, 1944
AspS9I GGNCC 4 cut(s) 231, 566, 1320, 1713
AsuC2I CCSGG 2 cut(s) 547, 613
AsuHPI GGTGA 8 cut(s) 43, 202, 481, 523, 530, 971, 1492, 1682
AvaII GGWCC 2 cut(s) 231, 1713
AvrII CCTAGG 1 cut(s) 119
BalI TGGCCA 3 cut(s) 710, 1224, 1583
BanI GGYRCC 2 cut(s) 245, 1941
BbrPI CACGTG 1 cut(s) 438
BbsI GAAGAC 2 cut(s) 160, 1565
Bbv12I GWGCWC 4 cut(s) 1054, 1339, 1705, 1969
BbvI GCAGC 6 cut(s) 394, 796, 896, 988, 1452, 1474
BccI CCATC 2 cut(s) 692, 1661
BceAI ACGGC 7 cut(s) 85, 95, 196, 211, 259, 405, 645
BciT130I CCWGG 3 cut(s) 284, 1221, 1621
BciVI GTATCC 1 cut(s) 1806
BcnI CCSGG 2 cut(s) 547, 613
BcoDI GTCTC 3 cut(s) 80, 1769, 2232
BfaI CTAG 7 cut(s) 120, 555, 675, 1302, 1877, 2051, 2102
BfmI CTRYAG 3 cut(s) 1466, 2275, 2399
BfoI RGCGCY 3 cut(s) 249, 878, 1945
BfuAI ACCTGC 2 cut(s) 831, 1832
BfuI GTATCC 1 cut(s) 1806
BglI GCCNNNNNGGC 3 cut(s) 320, 329, 671
BlnI CCTAGG 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 1338
Bme1390I CCNGG 5 cut(s) 284, 547, 613, 1221, 1621
Bme18I GGWCC 2 cut(s) 231, 1713
BmgT120I GGNCC 4 cut(s) 231, 566, 1320, 1713
BmiI GGNNCC 7 cut(s) 247, 313, 567, 659, 1277, 1943, 2292
BmrFI CCNGG 5 cut(s) 284, 547, 613, 1221, 1621
BmrI ACTGGG 1 cut(s) 2175
BmsI GCATC 7 cut(s) 742, 1120, 1222, 1375, 1432, 1918, 2037
BmuI ACTGGG 1 cut(s) 2175
BoxI GACNNNNGTC 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 160, 1565
BpmI CTGGAG 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 1371
Bpu1102I GCTNAGC 1 cut(s) 1338
BpuEI CTTGAG 1 cut(s) 1613
BpuMI CCSGG 2 cut(s) 547, 613
BsaAI YACGTR 1 cut(s) 438
BsaBI GATNNNNATC 2 cut(s) 1641, 2175
BsaHI GRCGYC 5 cut(s) 57, 246, 255, 332, 1942
BsaI GGTCTC 2 cut(s) 80, 2232
BsaJI CCNNGG 8 cut(s) 119, 318, 327, 415, 1092, 2032, 2059, 2182
BsaWI WCCGGW 1 cut(s) 1117
BsaXI ACNNNNNCTCC 6 cut(s) 533, 563, 854, 884, 1687, 1717
Bsc4I CCNNNNNNNGG 9 cut(s) 219, 416, 717, 1329, 1654, 2033, 2125, 2126, 2222
Bse118I RCCGGY 3 cut(s) 248, 787, 893
Bse1I ACTGG 3 cut(s) 1679, 1702, 2170
Bse3DI GCAATG 3 cut(s) 1154, 1446, 1584
Bse8I GATNNNNATC 2 cut(s) 1641, 2175
BseBI CCWGG 3 cut(s) 284, 1221, 1621
BseDI CCNNGG 8 cut(s) 119, 318, 327, 415, 1092, 2032, 2059, 2182
BseGI GGATG 5 cut(s) 304, 457, 799, 1180, 1390
BseJI GATNNNNATC 2 cut(s) 1641, 2175
BseLI CCNNNNNNNGG 9 cut(s) 219, 416, 717, 1329, 1654, 2033, 2125, 2126, 2222
BseMI GCAATG 3 cut(s) 1154, 1446, 1584
BseMII CTCAG 5 cut(s) 1352, 1371, 1764, 1982, 2331
BseNI ACTGG 3 cut(s) 1679, 1702, 2170
BseRI GAGGAG 3 cut(s) 620, 670, 875
BseXI GCAGC 6 cut(s) 394, 796, 896, 988, 1452, 1474
BsgI GTGCAG 1 cut(s) 1860
Bsh1236I CGCG 2 cut(s) 264, 275
Bsh1285I CGRYCG 1 cut(s) 262
BshNI GGYRCC 2 cut(s) 245, 1941
BsiEI CGRYCG 1 cut(s) 262
BsiHKAI GWGCWC 4 cut(s) 1054, 1339, 1705, 1969
BsiSI CCGG 7 cut(s) 249, 546, 612, 788, 816, 894, 1118
BslFI GGGAC 2 cut(s) 219, 2009
BslI CCNNNNNNNGG 9 cut(s) 219, 416, 717, 1329, 1654, 2033, 2125, 2126, 2222
BsmAI GTCTC 3 cut(s) 80, 1769, 2232
BsmBI CGTCTC 1 cut(s) 1769
BsmFI GGGAC 2 cut(s) 219, 2009
Bso31I GGTCTC 2 cut(s) 80, 2232
Bsp1286I GDGCHC 4 cut(s) 1054, 1339, 1705, 1969
Bsp1407I TGTACA 1 cut(s) 1239
Bsp143I GATC 5 cut(s) 20, 144, 420, 1642, 2071
Bsp1720I GCTNAGC 1 cut(s) 1338
Bsp19I CCATGG 4 cut(s) 318, 2032, 2059, 2182
BspCNI CTCAG 5 cut(s) 1351, 1372, 1765, 1981, 2332
BspFNI CGCG 2 cut(s) 264, 275
BspHI TCATGA 1 cut(s) 1110
BspLI GGNNCC 7 cut(s) 247, 313, 567, 659, 1277, 1943, 2292
BspMAI CTGCAG 1 cut(s) 1470
BspMI ACCTGC 2 cut(s) 831, 1832
BspPI GGATC 3 cut(s) 428, 1650, 2066
BspT107I GGYRCC 2 cut(s) 245, 1941
BspTNI GGTCTC 2 cut(s) 80, 2232
BsrDI GCAATG 3 cut(s) 1154, 1446, 1584
BsrFI RCCGGY 3 cut(s) 248, 787, 893
BsrGI TGTACA 1 cut(s) 1239
BsrI ACTGG 3 cut(s) 1679, 1702, 2170
BssAI RCCGGY 3 cut(s) 248, 787, 893
BssECI CCNNGG 8 cut(s) 119, 318, 327, 415, 1092, 2032, 2059, 2182
BssMI GATC 5 cut(s) 20, 144, 420, 1642, 2071
BssNAI GTATAC 1 cut(s) 1299
BssNI GRCGYC 5 cut(s) 57, 246, 255, 332, 1942
BssT1I CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
Bst1107I GTATAC 1 cut(s) 1299
Bst2UI CCWGG 3 cut(s) 284, 1221, 1621
Bst4CI ACNGT 4 cut(s) 83, 1525, 2007, 2151
Bst6I CTCTTC 3 cut(s) 467, 584, 1092
BstACI GRCGYC 5 cut(s) 57, 246, 255, 332, 1942
BstAPI GCANNNNNTGC 2 cut(s) 1160, 2271
BstAUI TGTACA 1 cut(s) 1239
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 8 cut(s) 250, 492, 690, 775, 1161, 1335, 1898, 1913
BstDEI CTNAG 8 cut(s) 290, 1338, 1371, 1380, 1389, 1773, 1968, 2340
BstDSI CCRYGG 5 cut(s) 318, 415, 2032, 2059, 2182
BstENI CCTNNNNNAGG 1 cut(s) 1652
BstF5I GGATG 5 cut(s) 304, 457, 799, 1180, 1390
BstFNI CGCG 2 cut(s) 264, 275
BstH2I RGCGCY 3 cut(s) 249, 878, 1945
BstHHI GCGC 6 cut(s) 248, 277, 877, 1911, 1933, 1944
BstKTI GATC 5 cut(s) 23, 147, 423, 1645, 2074
BstMAI GTCTC 3 cut(s) 80, 1769, 2232
BstMBI GATC 5 cut(s) 20, 144, 420, 1642, 2071
BstMCI CGRYCG 1 cut(s) 262
BstNI CCWGG 3 cut(s) 284, 1221, 1621
BstNSI RCATGY 2 cut(s) 1163, 1864
BstPAI GACNNNNGTC 1 cut(s) 72
BstSCI CCNGG 5 cut(s) 282, 545, 611, 1219, 1619
BstSFI CTRYAG 3 cut(s) 1466, 2275, 2399
BstUI CGCG 2 cut(s) 264, 275
BstV1I GCAGC 6 cut(s) 394, 796, 896, 988, 1452, 1474
BstV2I GAAGAC 2 cut(s) 160, 1565
BstX2I RGATCY 2 cut(s) 1642, 2071
BstYI RGATCY 2 cut(s) 1642, 2071
BstZ17I GTATAC 1 cut(s) 1299
BsuI GTATCC 1 cut(s) 1806
BtgI CCRYGG 5 cut(s) 318, 415, 2032, 2059, 2182
BtsCI GGATG 5 cut(s) 304, 457, 799, 1180, 1390
BtsI GCAGTG 1 cut(s) 1897
BtsIMutI CAGTG 5 cut(s) 911, 1521, 1686, 1897, 2147
BveI ACCTGC 2 cut(s) 831, 1832
Cac8I GCNNGC 8 cut(s) 250, 492, 690, 775, 1161, 1335, 1898, 1913
CaiI CAGNNNCTG 1 cut(s) 1697
CciI TCATGA 1 cut(s) 1110
CfoI GCGC 6 cut(s) 248, 277, 877, 1911, 1933, 1944
Cfr10I RCCGGY 3 cut(s) 248, 787, 893
Cfr13I GGNCC 4 cut(s) 231, 566, 1320, 1713
CseI GACGC 3 cut(s) 281, 321, 1994
CsiI ACCWGGT 1 cut(s) 1619
Csp6I GTAC 3 cut(s) 1240, 1676, 1695
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviQI GTAC 3 cut(s) 1240, 1676, 1695
DdeI CTNAG 8 cut(s) 290, 1338, 1371, 1380, 1389, 1773, 1968, 2340
DinI GGCGCC 2 cut(s) 247, 1943
DpnI GATC 5 cut(s) 22, 146, 422, 1644, 2073
DpnII GATC 5 cut(s) 20, 144, 420, 1642, 2071
DraI TTTAAA 1 cut(s) 745
DraIII CACNNNGTG 1 cut(s) 1139
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 4 cut(s) 93, 708, 1222, 1581
Eam1104I CTCTTC 3 cut(s) 467, 584, 1092
EarI CTCTTC 3 cut(s) 467, 584, 1092
Eco130I CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
Eco31I GGTCTC 2 cut(s) 80, 2232
Eco47I GGWCC 2 cut(s) 231, 1713
Eco72I CACGTG 1 cut(s) 438
EcoNI CCTNNNNNAGG 1 cut(s) 1652
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 282, 1219, 1619
EcoT14I CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
EgeI GGCGCC 2 cut(s) 247, 1943
EheI GGCGCC 2 cut(s) 247, 1943
ErhI CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
Esp3I CGTCTC 1 cut(s) 1769
FalI AAGNNNNNCTT 2 cut(s) 1728, 1760
FaqI GGGAC 2 cut(s) 219, 2009
FauI CCCGC 1 cut(s) 487
FauNDI CATATG 1 cut(s) 705
FblI GTMKAC 2 cut(s) 258, 1298
FokI GGATG 5 cut(s) 311, 464, 806, 1187, 1397
FspBI CTAG 7 cut(s) 120, 555, 675, 1302, 1877, 2051, 2102
GlaI GCGC 6 cut(s) 247, 276, 876, 1910, 1932, 1943
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 3 cut(s) 249, 878, 1945
HapII CCGG 7 cut(s) 249, 546, 612, 788, 816, 894, 1118
HgaI GACGC 3 cut(s) 281, 321, 1994
HhaI GCGC 6 cut(s) 248, 277, 877, 1911, 1933, 1944
Hin1I GRCGYC 5 cut(s) 57, 246, 255, 332, 1942
Hin6I GCGC 6 cut(s) 246, 275, 875, 1909, 1931, 1942
HinP1I GCGC 6 cut(s) 246, 275, 875, 1909, 1931, 1942
HincII GTYRAC 2 cut(s) 61, 259
HindII GTYRAC 2 cut(s) 61, 259
HindIII AAGCTT 3 cut(s) 1037, 1395, 2156
HpaII CCGG 7 cut(s) 249, 546, 612, 788, 816, 894, 1118
HphI GGTGA 8 cut(s) 43, 202, 481, 523, 530, 971, 1492, 1682
Hpy166II GTNNAC 7 cut(s) 61, 115, 259, 352, 1299, 1852, 2145
Hpy188III TCNNGA 7 cut(s) 296, 555, 766, 953, 1111, 1279, 1733
Hpy8I GTNNAC 7 cut(s) 61, 115, 259, 352, 1299, 1852, 2145
HpyCH4III ACNGT 4 cut(s) 83, 1525, 2007, 2151
HpyCH4IV ACGT 5 cut(s) 57, 255, 437, 1674, 1778
HpyF3I CTNAG 8 cut(s) 290, 1338, 1371, 1380, 1389, 1773, 1968, 2340
HpySE526I ACGT 5 cut(s) 57, 255, 437, 1674, 1778
Hsp92I GRCGYC 5 cut(s) 57, 246, 255, 332, 1942
HspAI GCGC 6 cut(s) 246, 275, 875, 1909, 1931, 1942
KasI GGCGCC 2 cut(s) 245, 1941
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 5 cut(s) 20, 144, 420, 1642, 2071
LmnI GCTCC 8 cut(s) 15, 286, 311, 657, 685, 1367, 1708, 1787
Lsp1109I GCAGC 6 cut(s) 394, 796, 896, 988, 1452, 1474
LweI GCATC 7 cut(s) 742, 1120, 1222, 1375, 1432, 1918, 2037
MabI ACCWGGT 1 cut(s) 1619
MaeI CTAG 7 cut(s) 120, 555, 675, 1302, 1877, 2051, 2102
MaeII ACGT 5 cut(s) 57, 255, 437, 1674, 1778
MaeIII GTNAC 3 cut(s) 1496, 1519, 1670
MalI GATC 5 cut(s) 22, 146, 422, 1644, 2073
MboI GATC 5 cut(s) 20, 144, 420, 1642, 2071
MflI RGATCY 2 cut(s) 1642, 2071
MhlI GDGCHC 4 cut(s) 1054, 1339, 1705, 1969
MlsI TGGCCA 3 cut(s) 710, 1224, 1583
MluNI TGGCCA 3 cut(s) 710, 1224, 1583
Mly113I GGCGCC 2 cut(s) 246, 1942
MlyI GAGTC 9 cut(s) 201, 369, 377, 524, 617, 860, 1012, 1109, 1636
MmeI TCCRAC 1 cut(s) 1040
Mox20I TGGCCA 3 cut(s) 710, 1224, 1583
MreI CGCCGGCG 1 cut(s) 248
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 2 cut(s) 1740, 1743
MscI TGGCCA 3 cut(s) 710, 1224, 1583
MslI CAYNNNNRTG 4 cut(s) 621, 1109, 1230, 1332
Msp20I TGGCCA 3 cut(s) 710, 1224, 1583
MspA1I CMGCKG 3 cut(s) 385, 887, 1465
MspI CCGG 7 cut(s) 249, 546, 612, 788, 816, 894, 1118
MspR9I CCNGG 5 cut(s) 284, 547, 613, 1221, 1621
MvaI CCWGG 3 cut(s) 284, 1221, 1621
MvnI CGCG 2 cut(s) 264, 275
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 2 cut(s) 246, 1942
NciI CCSGG 2 cut(s) 547, 613
NcoI CCATGG 4 cut(s) 318, 2032, 2059, 2182
NdeI CATATG 1 cut(s) 705
NdeII GATC 5 cut(s) 20, 144, 420, 1642, 2071
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 7 cut(s) 247, 313, 567, 659, 1277, 1943, 2292
NmuCI GTSAC 2 cut(s) 1519, 1670
NspI RCATGY 2 cut(s) 1163, 1864
PaeI GCATGC 1 cut(s) 1163
PagI TCATGA 1 cut(s) 1110
PcsI WCGNNNNNNNCGW 5 cut(s) 63, 108, 249, 261, 341
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 2 cut(s) 1740, 1743
PfeI GAWTC 3 cut(s) 901, 2176, 2322
PflFI GACNNNGTC 1 cut(s) 164
PflMI CCANNNNNTGG 2 cut(s) 1329, 2222
PleI GAGTC 9 cut(s) 201, 368, 376, 524, 616, 859, 1012, 1108, 1635
PluTI GGCGCC 2 cut(s) 249, 1945
PmaCI CACGTG 1 cut(s) 438
PmlI CACGTG 1 cut(s) 438
PpsI GAGTC 9 cut(s) 201, 368, 376, 524, 616, 859, 1012, 1108, 1635
Ppu21I YACGTR 1 cut(s) 438
PshAI GACNNNNGTC 1 cut(s) 72
Psp6I CCWGG 3 cut(s) 282, 1219, 1619
PspCI CACGTG 1 cut(s) 438
PspGI CCWGG 3 cut(s) 282, 1219, 1619
PspN4I GGNNCC 7 cut(s) 247, 313, 567, 659, 1277, 1943, 2292
PspPI GGNCC 4 cut(s) 231, 566, 1320, 1713
PstI CTGCAG 1 cut(s) 1470
PstNI CAGNNNCTG 1 cut(s) 1697
PsuI RGATCY 2 cut(s) 1642, 2071
PsyI GACNNNGTC 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 1465
RsaI GTAC 3 cut(s) 1241, 1677, 1696
RsaNI GTAC 3 cut(s) 1240, 1676, 1695
RseI CAYNNNNRTG 4 cut(s) 621, 1109, 1230, 1332
SalI GTCGAC 1 cut(s) 257
Sau3AI GATC 5 cut(s) 20, 144, 420, 1642, 2071
Sau96I GGNCC 4 cut(s) 231, 566, 1320, 1713
SchI GAGTC 9 cut(s) 201, 369, 377, 524, 617, 860, 1012, 1109, 1636
ScrFI CCNGG 5 cut(s) 284, 547, 613, 1221, 1621
SduI GDGCHC 4 cut(s) 1054, 1339, 1705, 1969
SexAI ACCWGGT 1 cut(s) 1619
SfaNI GCATC 7 cut(s) 742, 1120, 1222, 1375, 1432, 1918, 2037
SfcI CTRYAG 3 cut(s) 1466, 2275, 2399
SfoI GGCGCC 2 cut(s) 247, 1943
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 2 cut(s) 231, 1713
SmiMI CAYNNNNRTG 4 cut(s) 621, 1109, 1230, 1332
SmlI CTYRAG 1 cut(s) 1592
SmoI CTYRAG 1 cut(s) 1592
SphI GCATGC 1 cut(s) 1163
SspDI GGCGCC 2 cut(s) 245, 1941
SspMI CTAG 7 cut(s) 120, 555, 675, 1302, 1877, 2051, 2102
StyD4I CCNGG 5 cut(s) 282, 545, 611, 1219, 1619
StyI CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
TaaI ACNGT 4 cut(s) 83, 1525, 2007, 2151
TaiI ACGT 5 cut(s) 60, 258, 440, 1677, 1781
TaqI TCGA 9 cut(s) 54, 192, 258, 270, 344, 680, 696, 854, 2112
TatI WGTACW 1 cut(s) 1239
TauI GCSGC 4 cut(s) 98, 395, 1082, 2211
TfiI GAWTC 3 cut(s) 901, 2176, 2322
TscAI CASTG 5 cut(s) 911, 1528, 1686, 1897, 2154
TseFI GTSAC 2 cut(s) 1519, 1670
TseI GCWGC 6 cut(s) 382, 784, 884, 1001, 1462, 1465
Tsp45I GTSAC 2 cut(s) 1519, 1670
TspDTI ATGAA 5 cut(s) 178, 1099, 1127, 1968, 2369
TspGWI ACGGA 1 cut(s) 1735
TspRI CASTG 5 cut(s) 911, 1528, 1686, 1897, 2154
Tth111I GACNNNGTC 1 cut(s) 164
Van91I CCANNNNNTGG 2 cut(s) 1329, 2222
VpaK11BI GGWCC 2 cut(s) 231, 1713
XagI CCTNNNNNAGG 1 cut(s) 1652
XapI RAATTY 4 cut(s) 523, 937, 1538, 1740
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 2 cut(s) 1163, 1864
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 258, 1298
XmnI GAANNNNTTC 2 cut(s) 1740, 1743
XspI CTAG 7 cut(s) 120, 555, 675, 1302, 1877, 2051, 2102
ZraI GACGTC 2 cut(s) 58, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.