Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013419

Physical Location & Seq

Genomic Coordinates Forward (+)

46395534 .. 46399040

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0312600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGCATAAAAGGAAACGGACAAAGGTGGTTAAGGAAGGTAGGTTGGATAAACGTCCTTGCTCCAAGGGAGGTAATGAGTTTCCCAAGTTGGTTGAGAAAGTAGTTGTCACCCGTGAGGATGTCACTGAGGCTGTTGAAGAAAATGTCAATCTGACCAAGGAGCCGGAGAATGAGGAGGGGGTAGAATACGTGGATTTGACGATGTGTCCACCCACATCAAAGGTAGCTGAGGTTGAATGCAAGTTGGCAATAGGTTCTGTTGAACATATTGTTGCTTGTGCCACTGTTATGGAGTGCGAGGATCCTTCCCAACTCGTTCATGGCACTCCACTAGGGGATGGCAATGTGCGCGTTTCTATCTATGCCGCGCTTGAGGAGAAAGCAAAAGTGCCATTTCCTGTGAAAGATGAAATTGAAACAGTGAAGCAGGCTATGGGGAGTTGGGTAGCATGGCCTAAACACCTAGTCATAAAATCACATCTCAAGAAACCTCCCAAGGATAGTGCTGAAAAGAAGAAGAAAAGGAAAGAGATAGGGGAAGAGGACTCGGAGATTGAATTTGGCTTGGCTAAATTGGCACCATCATTACCAGCTTCATTGAAGATGTTATGTTTGTGGGGTGAAGATGCATTCAAAGATGGGCATACAATCAGCTTCTACATGGAGCCTGAAGTGTTTGGATTTTCTCGCAAGACTTATATATTGGGAAAAGATGTTCGGCGACTGGCAAGCATGAGGGAATTAACTGGAACTTGCATTGTACTGTACCAGAGGTACCTCTATGATCAGTTGAAGGCTTATAAAATGCTTGACATGGTTGCATTTGTTGACCCTTCACTTGTTGGTGCTGTGGGGTGTGGGAATGGAACTGTCAGGGCCCAACACATCAAAGATAGGCTTGCAACTGCTAAACCAGGACAGATGTTCATGTTGCCATTTAACTCGGGTGATCACTGGACTTTGACACTTGTTGATCCGGACAAACAAAGCGCCTATTTTATGGACCCGCTAAAAAGACGCTTACCCACAGGAGATTGGATGTCTATCGTGGAAACTGCTATGCGTATGTATAATGCTGAAAAGAAAAAGCAAGGCCGGAGTTCAGTCCAATGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGTGGATACTTTATCATGCGATACATGAGAGATATCATTGAGGATAAAGACATGTCATTGTTTCCTACGAAGCTGCGCATGGCATCTGCCGACCCATCTGTCGAGCCATCACACAACAGTTATACCACATACCCGTTGCCTGTTTGTTTATCAGACAAGTGTGTTCCACCGTTGTCTGAATTTTCAACAGACAACGGCTCGCTCTACAGCGGTGGCACTCCAAATCAGACAACAGTTTCAGTCTGTCGTCTGATACGTTTTTTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 TPR_1 TPR_11 TPR_16 TPR_2 TPR_8

Protein Analysis

474

Amino Acids

53.19

Weight (kDa)

8.29

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	78 - 157	1.9e-13	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	289 - 401	1.6e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05150 AT2G32450
fragaria_vesca	FvH4_2g39050
malus_domestica	MD08G1018000.v1.1 MD15G1017300.v1.1
prunus_persica	Prupe.1G370600_v2.0.a1
pyrus_communis	pycom08g01560 pycom15g01520
rosa_chinensis	RchiOBHm_Chr6g0302151
rosa_laevigata	RLG00000011191
rosa_multiflora	Rmu_ssc0000160.1_g000016
rosa_roxburghii	Rroxscaffold_7G00166040
rosa_rugosa	Rorug06G0312600
rosa_samantha	Rh6AG425100 Rh6BG477300 Rh6CG438000 Rh6DG425000
rosa_wichuraiana	Rw6G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	801
AasI	GACNNNNNNGTC	1 cut(s)	1253
Acc16I	TGCGCA	1 cut(s)	1232
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	2 cut(s)	577, 774
AccII	CGCG	2 cut(s)	351, 368
AccIII	TCCGGA	1 cut(s)	976
AciI	CCGC	3 cut(s)	366, 1007, 1365
AclWI	GGATC	3 cut(s)	296, 309, 968
AcsI	RAATTY	3 cut(s)	557, 1117, 1334
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	3 cut(s)	762, 767, 776
AflIII	ACRYGT	1 cut(s)	1206
AgsI	TTSAA	9 cut(s)	137, 236, 263, 416, 557, 601, 634, 793, 1341
AhdI	GACNNNNNGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	913
AloI	GAACNNNNNNTCC	2 cut(s)	699, 731
AluBI	AGCT	4 cut(s)	227, 593, 654, 1228
AluI	AGCT	4 cut(s)	227, 593, 654, 1228
AlwI	GGATC	3 cut(s)	296, 309, 968
Ama87I	CYCGRG	1 cut(s)	943
Aor13HI	TCCGGA	1 cut(s)	976
AoxI	GGCC	3 cut(s)	452, 876, 1093
ApaI	GGGCCC	1 cut(s)	880
ApeKI	GCWGC	1 cut(s)	1228
ApoI	RAATTY	3 cut(s)	557, 1117, 1334
Asp718I	GGTACC	1 cut(s)	774
AspLEI	GCGC	4 cut(s)	351, 370, 992, 1233
AspS9I	GGNCC	3 cut(s)	876, 877, 1003
AsuHPI	GGTGA	3 cut(s)	100, 632, 959
AvaI	CYCGRG	1 cut(s)	943
AvaII	GGWCC	1 cut(s)	1003
BaeGI	GKGCMC	1 cut(s)	880
BamHI	GGATCC	1 cut(s)	301
BanI	GGYRCC	2 cut(s)	577, 774
BanII	GRGCYC	1 cut(s)	880
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	1215
BccI	CCATC	5 cut(s)	332, 589, 632, 1258, 1270
BceAI	ACGGC	1 cut(s)	1366
BciT130I	CCWGG	1 cut(s)	915
BciVI	GTATCC	1 cut(s)	1154
BclI	TGATCA	2 cut(s)	784, 949
BfaI	CTAG	3 cut(s)	332, 464, 1143
BfmI	CTRYAG	1 cut(s)	1360
BfoI	RGCGCY	1 cut(s)	993
BfuI	GTATCC	1 cut(s)	1154
BisI	GCNGC	2 cut(s)	366, 1229
BlsI	GCNGC	2 cut(s)	367, 1230
Bme1390I	CCNGG	1 cut(s)	915
Bme18I	GGWCC	1 cut(s)	1003
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	943
BmgT120I	GGNCC	3 cut(s)	876, 877, 1003
BmiI	GGNNCC	7 cut(s)	162, 303, 579, 666, 776, 878, 1005
BmrFI	CCNGG	1 cut(s)	915
BmsI	GCATC	2 cut(s)	616, 1247
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	392, 467
BsaAI	YACGTR	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	1043
BsaJI	CCNNGG	3 cut(s)	63, 156, 495
BsaWI	WCCGGW	1 cut(s)	976
Bse1I	ACTGG	3 cut(s)	729, 751, 959
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	1043
BseAI	TCCGGA	1 cut(s)	976
BseBI	CCWGG	1 cut(s)	915
BseDI	CCNNGG	3 cut(s)	63, 156, 495
BseGI	GGATG	3 cut(s)	124, 343, 1044
BseJI	GATNNNNATC	1 cut(s)	1043
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	117, 219
BseNI	ACTGG	3 cut(s)	729, 751, 959
BseRI	GAGGAG	2 cut(s)	188, 389
BseSI	GKGCMC	1 cut(s)	880
BseXI	GCAGC	1 cut(s)	1215
Bsh1236I	CGCG	2 cut(s)	351, 368
BshFI	GGCC	3 cut(s)	454, 878, 1095
BshNI	GGYRCC	2 cut(s)	577, 774
BsiHKCI	CYCGRG	1 cut(s)	943
BsiSI	CCGG	3 cut(s)	164, 977, 1096
BsmI	GAATGC	3 cut(s)	242, 629, 1128
BsnI	GGCC	3 cut(s)	454, 878, 1095
BsoBI	CYCGRG	1 cut(s)	943
Bsp120I	GGGCCC	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp13I	TCCGGA	1 cut(s)	976
Bsp143I	GATC	4 cut(s)	301, 784, 949, 973
BspACI	CCGC	3 cut(s)	366, 1007, 1365
BspANI	GGCC	3 cut(s)	454, 878, 1095
BspCNI	CTCAG	2 cut(s)	118, 220
BspEI	TCCGGA	1 cut(s)	976
BspFNI	CGCG	2 cut(s)	351, 368
BspLI	GGNNCC	7 cut(s)	162, 303, 579, 666, 776, 878, 1005
BspPI	GGATC	3 cut(s)	296, 309, 968
BspT107I	GGYRCC	2 cut(s)	577, 774
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	729, 751, 959
BssECI	CCNNGG	3 cut(s)	63, 156, 495
BssMI	GATC	4 cut(s)	301, 784, 949, 973
BssT1I	CCWWGG	3 cut(s)	63, 156, 495
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	7 cut(s)	286, 421, 765, 871, 1274, 1326, 1390
Bst6I	CTCTTC	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	5 cut(s)	429, 730, 900, 1126, 1355
BstDEI	CTNAG	2 cut(s)	126, 228
BstF5I	GGATG	3 cut(s)	124, 343, 1044
BstFNI	CGCG	2 cut(s)	351, 368
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	4 cut(s)	351, 370, 992, 1233
BstKTI	GATC	4 cut(s)	304, 787, 952, 976
BstMBI	GATC	4 cut(s)	301, 784, 949, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 575
BstNI	CCWGG	1 cut(s)	915
BstNSI	RCATGY	1 cut(s)	1210
BstSCI	CCNGG	1 cut(s)	913
BstSFI	CTRYAG	1 cut(s)	1360
BstSLI	GKGCMC	1 cut(s)	880
BstUI	CGCG	2 cut(s)	351, 368
BstV1I	GCAGC	1 cut(s)	1215
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	1154
BsuRI	GGCC	3 cut(s)	454, 878, 1095
BtsCI	GGATG	3 cut(s)	124, 343, 1044
BtsIMutI	CAGTG	4 cut(s)	123, 282, 426, 952
Cac8I	GCNNGC	5 cut(s)	429, 730, 900, 1126, 1355
CfoI	GCGC	4 cut(s)	351, 370, 992, 1233
Cfr13I	GGNCC	3 cut(s)	876, 877, 1003
CseI	GACGC	1 cut(s)	1026
Csp6I	GTAC	3 cut(s)	761, 766, 775
CspCI	CAANNNNNGTGG	2 cut(s)	1138, 1173
CviQI	GTAC	3 cut(s)	761, 766, 775
DdeI	CTNAG	2 cut(s)	126, 228
DpnI	GATC	4 cut(s)	303, 786, 951, 975
DpnII	GATC	4 cut(s)	301, 784, 949, 973
DrdI	GACNNNNNNGTC	1 cut(s)	1253
DriI	GACNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	1253
Eam1104I	CTCTTC	1 cut(s)	534
Eam1105I	GACNNNNNGTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	3 cut(s)	63, 156, 495
Eco24I	GRGCYC	1 cut(s)	880
Eco32I	GATATC	1 cut(s)	1189
Eco47I	GGWCC	1 cut(s)	1003
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	943
EcoO109I	RGGNCCY	1 cut(s)	876
EcoRII	CCWGG	1 cut(s)	913
EcoRV	GATATC	1 cut(s)	1189
EcoT14I	CCWWGG	3 cut(s)	63, 156, 495
EcoT22I	ATGCAT	2 cut(s)	6, 631
EcoT38I	GRGCYC	1 cut(s)	880
ErhI	CCWWGG	3 cut(s)	63, 156, 495
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FauI	CCCGC	1 cut(s)	1014
FbaI	TGATCA	2 cut(s)	784, 949
Fnu4HI	GCNGC	2 cut(s)	366, 1229
FokI	GGATG	3 cut(s)	131, 350, 1051
FriOI	GRGCYC	1 cut(s)	880
Fsp4HI	GCNGC	2 cut(s)	366, 1229
FspBI	CTAG	3 cut(s)	332, 464, 1143
FspI	TGCGCA	1 cut(s)	1232
GlaI	GCGC	4 cut(s)	350, 369, 991, 1232
GluI	GCNGC	2 cut(s)	366, 1229
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	3 cut(s)	454, 878, 1095
HapII	CCGG	3 cut(s)	164, 977, 1096
HgaI	GACGC	1 cut(s)	1026
HhaI	GCGC	4 cut(s)	351, 370, 992, 1233
Hin6I	GCGC	4 cut(s)	349, 368, 990, 1231
HinP1I	GCGC	4 cut(s)	349, 368, 990, 1231
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	1 cut(s)	545
HpaII	CCGG	3 cut(s)	164, 977, 1096
HphI	GGTGA	3 cut(s)	100, 632, 959
Hpy166II	GTNNAC	2 cut(s)	209, 829
Hpy188I	TCNGA	6 cut(s)	153, 550, 1309, 1333, 1383, 1407
Hpy188III	TCNNGA	2 cut(s)	484, 977
Hpy8I	GTNNAC	2 cut(s)	209, 829
HpyAV	CCTTC	4 cut(s)	29, 315, 787, 843
HpyCH4III	ACNGT	7 cut(s)	286, 421, 765, 871, 1274, 1326, 1390
HpyCH4IV	ACGT	3 cut(s)	52, 189, 1411
HpyCH4V	TGCA	6 cut(s)	4, 240, 629, 756, 821, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 575
HpyF3I	CTNAG	2 cut(s)	126, 228
HpySE526I	ACGT	3 cut(s)	52, 189, 1411
HspAI	GCGC	4 cut(s)	349, 368, 990, 1231
Kpn2I	TCCGGA	1 cut(s)	976
KpnI	GGTACC	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	784, 949
Kzo9I	GATC	4 cut(s)	301, 784, 949, 973
LmnI	GCTCC	3 cut(s)	65, 160, 664
Lsp1109I	GCAGC	1 cut(s)	1215
LweI	GCATC	2 cut(s)	616, 1247
MaeI	CTAG	3 cut(s)	332, 464, 1143
MaeII	ACGT	3 cut(s)	52, 189, 1411
MaeIII	GTNAC	2 cut(s)	106, 121
MalI	GATC	4 cut(s)	303, 786, 951, 975
MboI	GATC	4 cut(s)	301, 784, 949, 973
MboII	GAAGA	6 cut(s)	149, 526, 529, 551, 613, 635
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	880
MluCI	AATT	6 cut(s)	411, 557, 572, 740, 1117, 1334
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	24
Mph1103I	ATGCAT	2 cut(s)	6, 631
MroI	TCCGGA	1 cut(s)	976
MseI	TTAA	3 cut(s)	30, 743, 939
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	1365
MspI	CCGG	3 cut(s)	164, 977, 1096
MspR9I	CCNGG	1 cut(s)	915
Mva1269I	GAATGC	3 cut(s)	242, 629, 1128
MvaI	CCWGG	1 cut(s)	915
MvnI	CGCG	2 cut(s)	351, 368
MwoI	GCNNNNNNNGC	2 cut(s)	348, 575
NdeII	GATC	4 cut(s)	301, 784, 949, 973
NlaIV	GGNNCC	7 cut(s)	162, 303, 579, 666, 776, 878, 1005
NmuCI	GTSAC	2 cut(s)	106, 121
NsbI	TGCGCA	1 cut(s)	1232
NsiI	ATGCAT	2 cut(s)	6, 631
NspI	RCATGY	1 cut(s)	1210
PciI	ACATGT	1 cut(s)	1206
PcsI	WCGNNNNNNNCGW	1 cut(s)	1408
PctI	GAATGC	3 cut(s)	242, 629, 1128
PkrI	GCNGC	2 cut(s)	367, 1230
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	190
PscI	ACATGT	1 cut(s)	1206
PsiI	TTATAA	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	7 cut(s)	162, 303, 579, 666, 776, 878, 1005
PspOMI	GGGCCC	1 cut(s)	876
PspPI	GGNCC	3 cut(s)	876, 877, 1003
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	762, 767, 776
RsaNI	GTAC	3 cut(s)	761, 766, 775
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	30, 743, 939
SatI	GCNGC	2 cut(s)	366, 1229
Sau3AI	GATC	4 cut(s)	301, 784, 949, 973
Sau96I	GGNCC	3 cut(s)	876, 877, 1003
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	915
SduI	GDGCHC	1 cut(s)	880
SfaNI	GCATC	2 cut(s)	616, 1247
SfcI	CTRYAG	1 cut(s)	1360
SinI	GGWCC	1 cut(s)	1003
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	371, 482
SmoI	CTYRAG	2 cut(s)	371, 482
Sse9I	AATT	6 cut(s)	411, 557, 572, 740, 1117, 1334
SsiI	CCGC	3 cut(s)	366, 1007, 1365
SspMI	CTAG	3 cut(s)	332, 464, 1143
StyD4I	CCNGG	1 cut(s)	913
StyI	CCWWGG	3 cut(s)	63, 156, 495
TaaI	ACNGT	7 cut(s)	286, 421, 765, 871, 1274, 1326, 1390
TaiI	ACGT	3 cut(s)	55, 192, 1414
TaqI	TCGA	1 cut(s)	1257
TasI	AATT	6 cut(s)	411, 557, 572, 740, 1117, 1334
TatI	WGTACW	1 cut(s)	760
TauI	GCSGC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	30, 743, 939
Tru9I	TTAA	3 cut(s)	30, 743, 939
TscAI	CASTG	4 cut(s)	130, 289, 426, 959
TseFI	GTSAC	2 cut(s)	106, 121
TseI	GCWGC	1 cut(s)	1228
Tsp45I	GTSAC	2 cut(s)	106, 121
TspDTI	ATGAA	4 cut(s)	308, 423, 585, 916
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	4 cut(s)	130, 289, 426, 959
VpaK11BI	GGWCC	1 cut(s)	1003
XapI	RAATTY	3 cut(s)	557, 1117, 1334
XceI	RCATGY	1 cut(s)	1210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	3 cut(s)	332, 464, 1143
Zsp2I	ATGCAT	2 cut(s)	6, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.