RchiOBHm_Chr6g0302151

TPR repeat-containing protein At1g05150-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013419
Physical Location & Seq
Reverse (-)
62318227 .. 62321378
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27142

Sequence Viewer

Length: 2415 bp
ATGGCGACGAGAGGGAGCAGATCAGAGAAGGTCAAGAGGATTTTCTACCAATTTGACGCCAACCATGACGGAGGGCTTAACCGGGAGGAAATGGCGGCGCTCGTGGTGGCGGTAAACCCTAGGGTCAAGTTCAGCGACGAGCAGATCAATGCCATTTTGGACGAGGTGTTTCGGACCTACGGCGACTTCATCGACGGGGACAAGGGGCTGACGTATGAGGGCCTGTTGCGGACGTATGACGACGGAGCCGGCGACGTGGACCGTGACTTCGACGCGCTTGGGTTGGAGCTGAGCCTGGATGAGGCCAAAGGGGCTTCCATGGCGGCCGAGGCGTCGTCGTCGTCGTCGATAGTGGACGAGCGCATCGCGGAGTCGCAGAAGAAGCAGCGGACGGCGGCCTGGGCGGTGTCGCCGAACCACGGGATCGTGTTCGACGACACGTGGAAGATTGTGGACGATTTGGAGATTCTGGTCAAGAGGTTGAAGGTGAAGCAGGCGGGGAATAATAATGGCAAGGTCAAGGGTGAGAATCTGGACTCGTATTCGGAGGCTGGGTGGTCTAGAGAATTGGGGCCTTCTTCGGAGATTTCGGACAAGAGGGTGTTTTGGGAAGAGTCTGGGCATGATTATGCTCTGTTTGTGAAGGACTTGGGGGTGCTCAGGAGCCGTGCCGACGGAGCAAGGTCGAGGGAGCAAGCTTTCGATGGACACATGGCGATCGGGAGGGTTTTGTATGAGCACCAGCTGTTTAAGGAAGCTTTGGTTAGTTTCAAGCGAGCCTGTGAGTTGCAACCGGTGGATGTTAGGCCTCATTTCAGGGCTGGGAATTGCTTGTATGTTCTTGGCAGGTACAAAGAGTCTAAAGAGGAGTTTCTGCTGGCTCTTGAGGCCGCCGAGGCCGGTGGGAATCAGTGGGCCTATTTGCTTCCACAGATTTATGTGAATCTCGGGATTGCTGTTGAAGGTGAAGGTATGGTTTTAAGTGCTTGCGAGTATTATAGGGAAGCTGCTATACTTTGTCCCACTCATTTTAGAGCCTTGAAACTTTTGGGGAGTGCCTTGTTTGGGGTTGGGGAATATAGGGCAGCTGTTAAGGCCTTGGAAGAGTCCATTTTCATGAAACCAGACTATGCCGATGCACATTGTGATTTGGCTTCGGCTTTGCATGCTCTGGGTGAGGATGAGAGGGCAATCGAGGTTTTTCAGAAAGCCATTGATTTGAAACCCGGCCATGTTGATGCCTTGTACAATTTGGGTGGCCTCTATATGGACTTGGGAAGGTTCCAGAGAGCTTCTGAGATGTATACTAGGGTTTTAGCTGTGTGGCCAAACCATTGGCGTGCTCAGCTTAACAGGGCTGTGTCCTTGTTGGGAGCTAGGGAAACTGAGGATGCTAAGAAAGCTTTGAAGGAAGCATTGAAAATGACCAACAGGGTTGAATTGCATGATGCCATTGCACATCTGAAGCAGCTGCAGAAGAAGAAGAAGGTGAAGGCAAATGGGGGGGGTGCCAATGGGGAAGGTTCCTTTGTCACTGTCGACGCTACAAAATTTAAGGCCGTTGGGGAGAAAACAACATTGAGGCAAGACTTAGCCACTGCACTTGAGATTAGGGCTTTTCAGAGGATTACCAGGTTGAGTCGTTGTGATGTGGATCTCCTTAAAAGGGAGATGAGTGATGGTGATGTACCAGTGTCGTATTCAGGTACTGGTGTCCCGCAGAGGTCCATACGCAAGCCTAACTTGGAAGAAATTCTCCGCAGGTTGCTTAATTTCCTAAAGCCTGAGACTTTTCAAGGAGCTGTGAAAGCCATAAACGAGAGAATACTCTCTGTTTTTGATGATACAGGTGCAGGTAGGGTGGACTTGGGCATGTTTTTAGCTGTTCTAGCCCCTATTTGCAGTGGCCCGCCAGAAAAGCGCAAGCGAATTGCTTTTGATGCGCTCTTGTGGCGCCCTCTGAATGAAGGTGGTGGTTCTCAGATAAGAAAAGATGACGCCACTAAATATATCAAACTGTTGAGAGCTATATATGTCCCTTCCCATGGGATTAGTGAGATGCTGGAAGTCCATGGAGAAACAGATCCTTCAACAATGTCTTACACAGAGTTTCTTGTCATGTTTAACGACCCTGATTGGGGTTTTGGTATCATGTCCACGCTGTTGAAGCTTGAAACTGGGGACAGGAATCGCCATGGTAATCATGTCTGTTCAGTTTGCCGCTATCCAATTATTGGGTCTCGCTTTAAGGAGATAAAATCTCATTTCAGTTTGTGCAATCAATGCTACAGCGAGGGAAAAGTTCCTCCTGCCTATAAGCAGGAAGAGTACAAGTTCAGAGAATATGGAACTGAGGGCGAAGCCATGAAAGACAAGTGCAAGTGCTTTACATTGCAAGCCCATAATGACCCGTAG

Protein Analysis

804

Amino Acids

89.84

Weight (kDa)

6.31

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 350 - 410 3e-10 Tetratricopeptide repeat
TPR_11 PF13414 387 - 426 5.3e-08 TPR repeat
TPR_19 PF14559 396 - 439 4.6e-07 Tetratricopeptide repeat
TPR_1 PF00515 413 - 445 3.2e-06 Tetratricopeptide repeat
TPR_12 PF13424 414 - 476 4.4e-06 Tetratricopeptide repeat
TPR_16 PF13432 416 - 474 1.1e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05150 AT2G32450
fragaria_vesca FvH4_2g39050
malus_domestica MD08G1018000.v1.1 MD15G1017300.v1.1
prunus_persica Prupe.1G370600_v2.0.a1
pyrus_communis pycom08g01560 pycom15g01520
rosa_chinensis RchiOBHm_Chr6g0302151
rosa_laevigata RLG00000011191
rosa_multiflora Rmu_ssc0000160.1_g000016
rosa_roxburghii Rroxscaffold_7G00166040
rosa_rugosa Rorug06G0312600
rosa_samantha Rh6AG425100 Rh6BG477300 Rh6CG438000 Rh6DG425000
rosa_wichuraiana Rw6G036820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 837, 1752, 1844
AccB1I GGYRCC 2 cut(s) 1508, 1953
AccB7I CCANNNNNTGG 1 cut(s) 2234
AccI GTMKAC 2 cut(s) 1304, 1539
AccII CGCG 2 cut(s) 275, 368
AclWI GGATC 3 cut(s) 431, 1662, 2078
AcoI YGGCCR 3 cut(s) 324, 1228, 1325
AcsI RAATTY 2 cut(s) 1550, 1752
AcuI CTGAAG 1 cut(s) 1484
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 4 cut(s) 57, 332, 1954, 1998
AdeI CACNNNGTG 1 cut(s) 1145
AfaI GTAC 5 cut(s) 851, 1247, 1689, 1708, 2330
AfiI CCNNNNNNNGG 9 cut(s) 301, 419, 1065, 1267, 1666, 2045, 2137, 2138, 2234
AflIII ACRYGT 1 cut(s) 438
AgeI ACCGGT 1 cut(s) 793
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 3 cut(s) 294, 398, 1631
Alw21I GWGCWC 3 cut(s) 660, 741, 1345
Alw26I GTCTC 2 cut(s) 1781, 2244
AlwI GGATC 3 cut(s) 431, 1662, 2078
AlwNI CAGNNNCTG 1 cut(s) 1709
Ama87I CYCGRG 1 cut(s) 947
ApeKI GCWGC 5 cut(s) 385, 1007, 1085, 1468, 1471
ApoI RAATTY 2 cut(s) 1550, 1752
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsiGI ACCGGT 1 cut(s) 793
Asp700I GAANNNNTTC 1 cut(s) 1752
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 6 cut(s) 100, 277, 363, 1923, 1945, 1956
AspS9I GGNCC 7 cut(s) 174, 220, 259, 572, 915, 1725, 1907
AsuC2I CCSGG 2 cut(s) 83, 1227
AsuHPI GGTGA 6 cut(s) 499, 536, 977, 1187, 1501, 1694
AvaI CYCGRG 1 cut(s) 947
AvaII GGWCC 3 cut(s) 174, 259, 1725
AvrII CCTAGG 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 1698, 1731
BalI TGGCCA 1 cut(s) 1327
BanI GGYRCC 2 cut(s) 1508, 1953
BarI GAAGNNNNNNTAC 2 cut(s) 996, 1028
BauI CACGAG 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 441
Bbv12I GWGCWC 3 cut(s) 660, 741, 1345
BbvI GCAGC 5 cut(s) 397, 994, 1097, 1458, 1480
BccI CCATC 2 cut(s) 698, 1673
BceAI ACGGC 4 cut(s) 196, 408, 651, 1544
BciT130I CCWGG 3 cut(s) 296, 400, 1633
BcnI CCSGG 2 cut(s) 83, 1227
BcoDI GTCTC 2 cut(s) 1781, 2244
BfaI CTAG 5 cut(s) 120, 561, 1308, 1377, 1889
BfmI CTRYAG 2 cut(s) 1472, 2287
BfoI RGCGCY 2 cut(s) 101, 1957
BfuAI ACCTGC 3 cut(s) 837, 1752, 1844
BglI GCCNNNNNGGC 2 cut(s) 311, 896
BlnI CCTAGG 1 cut(s) 119
BlpI GCTNAGC 2 cut(s) 290, 1344
Bme1390I CCNGG 5 cut(s) 83, 296, 400, 1227, 1633
Bme18I GGWCC 3 cut(s) 174, 259, 1725
BmeT110I CYCGRG 1 cut(s) 947
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 7 cut(s) 174, 220, 259, 572, 915, 1725, 1907
BmiI GGNNCC 7 cut(s) 247, 573, 665, 1283, 1510, 1525, 1955
BmrFI CCNGG 5 cut(s) 83, 296, 400, 1227, 1633
BmrI ACTGGG 1 cut(s) 2187
BmsI GCATC 7 cut(s) 372, 1126, 1228, 1381, 1438, 1930, 2049
BmuI ACTGGG 1 cut(s) 2187
Bpu10I CCTNAGC 1 cut(s) 659
Bpu1102I GCTNAGC 2 cut(s) 290, 1344
BpuEI CTTGAG 2 cut(s) 905, 1625
BpuMI CCSGG 2 cut(s) 83, 1227
BsaAI YACGTR 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 1653
BsaHI GRCGYC 4 cut(s) 57, 332, 1954, 1998
BsaI GGTCTC 1 cut(s) 2244
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 9 cut(s) 301, 419, 1065, 1267, 1666, 2045, 2137, 2138, 2234
Bse118I RCCGGY 3 cut(s) 248, 793, 899
Bse1I ACTGG 3 cut(s) 1691, 1714, 2182
Bse3DI GCAATG 2 cut(s) 1452, 2390
Bse8I GATNNNNATC 1 cut(s) 1653
BseBI CCWGG 3 cut(s) 296, 400, 1633
BseGI GGATG 4 cut(s) 304, 805, 1186, 1396
BseJI GATNNNNATC 1 cut(s) 1653
BseLI CCNNNNNNNGG 9 cut(s) 301, 419, 1065, 1267, 1666, 2045, 2137, 2138, 2234
BseMI GCAATG 2 cut(s) 1452, 2390
BseMII CTCAG 8 cut(s) 281, 673, 1287, 1358, 1377, 1776, 1994, 2343
BseNI ACTGG 3 cut(s) 1691, 1714, 2182
BseRI GAGGAG 1 cut(s) 881
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 5 cut(s) 397, 994, 1097, 1458, 1480
BseYI CCCAGC 2 cut(s) 551, 821
BsgI GTGCAG 2 cut(s) 1584, 1872
Bsh1236I CGCG 2 cut(s) 275, 368
Bsh1285I CGRYCG 2 cut(s) 327, 720
BshNI GGYRCC 2 cut(s) 1508, 1953
BshTI ACCGGT 1 cut(s) 793
BsiEI CGRYCG 2 cut(s) 327, 720
BsiHKAI GWGCWC 3 cut(s) 660, 741, 1345
BsiHKCI CYCGRG 1 cut(s) 947
BsiSI CCGG 5 cut(s) 82, 249, 794, 900, 1227
BslFI GGGAC 5 cut(s) 212, 1005, 1700, 2021, 2195
BslI CCNNNNNNNGG 9 cut(s) 301, 419, 1065, 1267, 1666, 2045, 2137, 2138, 2234
BsmAI GTCTC 2 cut(s) 1781, 2244
BsmFI GGGAC 5 cut(s) 212, 1005, 1700, 2021, 2195
Bso31I GGTCTC 1 cut(s) 2244
BsoBI CYCGRG 1 cut(s) 947
Bsp1286I GDGCHC 3 cut(s) 660, 741, 1345
Bsp1407I TGTACA 1 cut(s) 1245
Bsp143I GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
Bsp1720I GCTNAGC 2 cut(s) 290, 1344
Bsp19I CCATGG 4 cut(s) 318, 2044, 2071, 2194
BspCNI CTCAG 8 cut(s) 282, 672, 1288, 1357, 1378, 1777, 1993, 2344
BspFNI CGCG 2 cut(s) 275, 368
BspHI TCATGA 1 cut(s) 1116
BspLI GGNNCC 7 cut(s) 247, 573, 665, 1283, 1510, 1525, 1955
BspMAI CTGCAG 1 cut(s) 1476
BspMI ACCTGC 3 cut(s) 837, 1752, 1844
BspPI GGATC 3 cut(s) 431, 1662, 2078
BspT107I GGYRCC 2 cut(s) 1508, 1953
BspTNI GGTCTC 1 cut(s) 2244
BsrDI GCAATG 2 cut(s) 1452, 2390
BsrFI RCCGGY 3 cut(s) 248, 793, 899
BsrGI TGTACA 1 cut(s) 1245
BsrI ACTGG 3 cut(s) 1691, 1714, 2182
BssAI RCCGGY 3 cut(s) 248, 793, 899
BssMI GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
BssNAI GTATAC 1 cut(s) 1305
BssNI GRCGYC 4 cut(s) 57, 332, 1954, 1998
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 6 cut(s) 119, 318, 1098, 2044, 2071, 2194
Bst1107I GTATAC 1 cut(s) 1305
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 3 cut(s) 296, 400, 1633
Bst4CI ACNGT 3 cut(s) 263, 1537, 2019
Bst6I CTCTTC 3 cut(s) 606, 1098, 2319
BstACI GRCGYC 4 cut(s) 57, 332, 1954, 1998
BstAPI GCANNNNNTGC 1 cut(s) 2283
BstAUI TGTACA 1 cut(s) 1245
BstBAI YACGTR 1 cut(s) 441
BstDSI CCRYGG 5 cut(s) 318, 418, 2044, 2071, 2194
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 4 cut(s) 304, 805, 1186, 1396
BstFNI CGCG 2 cut(s) 275, 368
BstH2I RGCGCY 2 cut(s) 101, 1957
BstHHI GCGC 6 cut(s) 100, 277, 363, 1923, 1945, 1956
BstKTI GATC 6 cut(s) 23, 147, 426, 720, 1657, 2086
BstMAI GTCTC 2 cut(s) 1781, 2244
BstMBI GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
BstMCI CGRYCG 2 cut(s) 327, 720
BstNI CCWGG 3 cut(s) 296, 400, 1633
BstNSI RCATGY 2 cut(s) 1169, 1876
BstSCI CCNGG 5 cut(s) 81, 294, 398, 1225, 1631
BstSFI CTRYAG 2 cut(s) 1472, 2287
BstUI CGCG 2 cut(s) 275, 368
BstV1I GCAGC 5 cut(s) 397, 994, 1097, 1458, 1480
BstX2I RGATCY 2 cut(s) 1654, 2083
BstXI CCANNNNNNTGG 1 cut(s) 1335
BstYI RGATCY 2 cut(s) 1654, 2083
BstZ17I GTATAC 1 cut(s) 1305
BstZI CGGCCG 1 cut(s) 324
BtgI CCRYGG 5 cut(s) 318, 418, 2044, 2071, 2194
BtgZI GCGATG 1 cut(s) 349
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 4 cut(s) 304, 805, 1186, 1396
BtsI GCAGTG 2 cut(s) 1596, 1909
BtsIMutI CAGTG 5 cut(s) 917, 1533, 1596, 1698, 1909
BveI ACCTGC 3 cut(s) 837, 1752, 1844
CaiI CAGNNNCTG 1 cut(s) 1709
CciI TCATGA 1 cut(s) 1116
CfoI GCGC 6 cut(s) 100, 277, 363, 1923, 1945, 1956
Cfr10I RCCGGY 3 cut(s) 248, 793, 899
Cfr13I GGNCC 7 cut(s) 174, 220, 259, 572, 915, 1725, 1907
CseI GACGC 5 cut(s) 65, 281, 321, 1550, 2006
CsiI ACCWGGT 1 cut(s) 1631
Csp6I GTAC 5 cut(s) 850, 1246, 1688, 1707, 2329
CspAI ACCGGT 1 cut(s) 793
CspCI CAANNNNNGTGG 4 cut(s) 1237, 1272, 1585, 1620
CviQI GTAC 5 cut(s) 850, 1246, 1688, 1707, 2329
DinI GGCGCC 1 cut(s) 1955
DpnI GATC 6 cut(s) 22, 146, 425, 719, 1656, 2085
DpnII GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
DraIII CACNNNGTG 1 cut(s) 1145
EaeI YGGCCR 3 cut(s) 324, 1228, 1325
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 3 cut(s) 606, 1098, 2319
EarI CTCTTC 3 cut(s) 606, 1098, 2319
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 6 cut(s) 119, 318, 1098, 2044, 2071, 2194
Eco147I AGGCCT 2 cut(s) 808, 1097
Eco31I GGTCTC 1 cut(s) 2244
Eco47I GGWCC 3 cut(s) 174, 259, 1725
Eco52I CGGCCG 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 1484
Eco72I CACGTG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 947
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 220, 572
EcoRII CCWGG 3 cut(s) 294, 398, 1631
EcoT14I CCWWGG 6 cut(s) 119, 318, 1098, 2044, 2071, 2194
EgeI GGCGCC 1 cut(s) 1955
EheI GGCGCC 1 cut(s) 1955
ErhI CCWWGG 6 cut(s) 119, 318, 1098, 2044, 2071, 2194
FalI AAGNNNNNCTT 2 cut(s) 1727, 1759
FaqI GGGAC 5 cut(s) 212, 1005, 1700, 2021, 2195
FauI CCCGC 3 cut(s) 490, 1725, 1917
FblI GTMKAC 2 cut(s) 1304, 1539
FokI GGATG 4 cut(s) 311, 812, 1193, 1403
FspBI CTAG 5 cut(s) 120, 561, 1308, 1377, 1889
GlaI GCGC 6 cut(s) 99, 276, 362, 1922, 1944, 1955
GsaI CCCAGC 2 cut(s) 555, 825
HaeII RGCGCY 2 cut(s) 101, 1957
HapII CCGG 5 cut(s) 82, 249, 794, 900, 1227
HgaI GACGC 5 cut(s) 65, 281, 321, 1550, 2006
HhaI GCGC 6 cut(s) 100, 277, 363, 1923, 1945, 1956
Hin1I GRCGYC 4 cut(s) 57, 332, 1954, 1998
Hin6I GCGC 6 cut(s) 98, 275, 361, 1921, 1943, 1954
HinP1I GCGC 6 cut(s) 98, 275, 361, 1921, 1943, 1954
HincII GTYRAC 1 cut(s) 1540
HindII GTYRAC 1 cut(s) 1540
HindIII AAGCTT 4 cut(s) 696, 756, 1401, 2168
HpaII CCGG 5 cut(s) 82, 249, 794, 900, 1227
HphI GGTGA 6 cut(s) 499, 536, 977, 1187, 1501, 1694
Hpy166II GTNNAC 8 cut(s) 115, 259, 355, 454, 1305, 1540, 1864, 2157
Hpy8I GTNNAC 8 cut(s) 115, 259, 355, 454, 1305, 1540, 1864, 2157
HpyCH4III ACNGT 3 cut(s) 263, 1537, 2019
HpyCH4IV ACGT 4 cut(s) 212, 233, 255, 440
HpySE526I ACGT 4 cut(s) 212, 233, 255, 440
Hsp92I GRCGYC 4 cut(s) 57, 332, 1954, 1998
HspAI GCGC 6 cut(s) 98, 275, 361, 1921, 1943, 1954
KasI GGCGCC 1 cut(s) 1953
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
LmnI GCTCC 8 cut(s) 15, 245, 286, 663, 677, 691, 1373, 1799
Lsp1109I GCAGC 5 cut(s) 397, 994, 1097, 1458, 1480
LweI GCATC 7 cut(s) 372, 1126, 1228, 1381, 1438, 1930, 2049
MabI ACCWGGT 1 cut(s) 1631
MaeI CTAG 5 cut(s) 120, 561, 1308, 1377, 1889
MaeII ACGT 4 cut(s) 212, 233, 255, 440
MaeIII GTNAC 2 cut(s) 263, 1531
MalI GATC 6 cut(s) 22, 146, 425, 719, 1656, 2085
MboI GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
MflI RGATCY 2 cut(s) 1654, 2083
MhlI GDGCHC 3 cut(s) 660, 741, 1345
MlsI TGGCCA 1 cut(s) 1327
MluNI TGGCCA 1 cut(s) 1327
Mly113I GGCGCC 1 cut(s) 1954
MlyI GAGTC 6 cut(s) 380, 530, 623, 866, 1115, 1648
MmeI TCCRAC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 1327
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 1752
MscI TGGCCA 1 cut(s) 1327
MslI CAYNNNNRTG 4 cut(s) 627, 1115, 1236, 1338
Msp20I TGGCCA 1 cut(s) 1327
MspA1I CMGCKG 4 cut(s) 388, 745, 1088, 1471
MspI CCGG 5 cut(s) 82, 249, 794, 900, 1227
MspR9I CCNGG 5 cut(s) 83, 296, 400, 1227, 1633
MvaI CCWGG 3 cut(s) 296, 400, 1633
MvnI CGCG 2 cut(s) 275, 368
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 1954
NciI CCSGG 2 cut(s) 83, 1227
NcoI CCATGG 4 cut(s) 318, 2044, 2071, 2194
NdeII GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 7 cut(s) 247, 573, 665, 1283, 1510, 1525, 1955
NmeAIII GCCGAG 2 cut(s) 352, 919
NmuCI GTSAC 2 cut(s) 263, 1531
NspI RCATGY 2 cut(s) 1169, 1876
PaeI GCATGC 1 cut(s) 1169
PagI TCATGA 1 cut(s) 1116
PceI AGGCCT 2 cut(s) 808, 1097
PcsI WCGNNNNNNNCGW 4 cut(s) 249, 341, 344, 432
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 1752
PfeI GAWTC 5 cut(s) 466, 529, 907, 943, 2188
PflMI CCANNNNNTGG 1 cut(s) 2234
PinAI ACCGGT 1 cut(s) 793
Ple19I CGATCG 1 cut(s) 720
PleI GAGTC 6 cut(s) 379, 530, 622, 865, 1114, 1647
PluTI GGCGCC 1 cut(s) 1957
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 6 cut(s) 379, 530, 622, 865, 1114, 1647
Ppu21I YACGTR 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 294, 398, 1631
PspCI CACGTG 1 cut(s) 441
PspFI CCCAGC 2 cut(s) 551, 821
PspGI CCWGG 3 cut(s) 294, 398, 1631
PspN4I GGNNCC 7 cut(s) 247, 573, 665, 1283, 1510, 1525, 1955
PspPI GGNCC 7 cut(s) 174, 220, 259, 572, 915, 1725, 1907
PstI CTGCAG 1 cut(s) 1476
PstNI CAGNNNCTG 1 cut(s) 1709
PsuI RGATCY 2 cut(s) 1654, 2083
PvuI CGATCG 1 cut(s) 720
PvuII CAGCTG 3 cut(s) 745, 1088, 1471
RsaI GTAC 5 cut(s) 851, 1247, 1689, 1708, 2330
RsaNI GTAC 5 cut(s) 850, 1246, 1688, 1707, 2329
RseI CAYNNNNRTG 4 cut(s) 627, 1115, 1236, 1338
SalI GTCGAC 1 cut(s) 1538
Sau3AI GATC 6 cut(s) 20, 144, 423, 717, 1654, 2083
Sau96I GGNCC 7 cut(s) 174, 220, 259, 572, 915, 1725, 1907
SchI GAGTC 6 cut(s) 380, 530, 623, 866, 1115, 1648
ScrFI CCNGG 5 cut(s) 83, 296, 400, 1227, 1633
SduI GDGCHC 3 cut(s) 660, 741, 1345
SexAI ACCWGGT 1 cut(s) 1631
SfaNI GCATC 7 cut(s) 372, 1126, 1228, 1381, 1438, 1930, 2049
SfcI CTRYAG 2 cut(s) 1472, 2287
SfiI GGCCNNNNNGGCC 1 cut(s) 896
SfoI GGCGCC 1 cut(s) 1955
SinI GGWCC 3 cut(s) 174, 259, 1725
SmiMI CAYNNNNRTG 4 cut(s) 627, 1115, 1236, 1338
SmlI CTYRAG 2 cut(s) 884, 1604
SmoI CTYRAG 2 cut(s) 884, 1604
SphI GCATGC 1 cut(s) 1169
SseBI AGGCCT 2 cut(s) 808, 1097
SspDI GGCGCC 1 cut(s) 1953
SspMI CTAG 5 cut(s) 120, 561, 1308, 1377, 1889
StuI AGGCCT 2 cut(s) 808, 1097
StyD4I CCNGG 5 cut(s) 81, 294, 398, 1225, 1631
StyI CCWWGG 6 cut(s) 119, 318, 1098, 2044, 2071, 2194
TaaI ACNGT 3 cut(s) 263, 1537, 2019
TaiI ACGT 4 cut(s) 215, 236, 258, 443
TaqI TCGA 8 cut(s) 192, 270, 347, 432, 686, 702, 1194, 1539
TatI WGTACW 2 cut(s) 1245, 2328
TauI GCSGC 5 cut(s) 98, 326, 398, 893, 2223
TfiI GAWTC 5 cut(s) 466, 529, 907, 943, 2188
TscAI CASTG 5 cut(s) 917, 1540, 1603, 1698, 1909
TseFI GTSAC 2 cut(s) 263, 1531
TseI GCWGC 5 cut(s) 385, 1007, 1085, 1468, 1471
Tsp45I GTSAC 2 cut(s) 263, 1531
TspDTI ATGAA 5 cut(s) 178, 1105, 1133, 1980, 2381
TspGWI ACGGA 3 cut(s) 84, 258, 690
TspRI CASTG 5 cut(s) 917, 1540, 1603, 1698, 1909
Van91I CCANNNNNTGG 1 cut(s) 2234
VpaK11BI GGWCC 3 cut(s) 174, 259, 1725
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 1550, 1752
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 2 cut(s) 1169, 1876
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 1304, 1539
XmnI GAANNNNTTC 1 cut(s) 1752
XspI CTAG 5 cut(s) 120, 561, 1308, 1377, 1889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.