Rroxscaffold_7G00166040

TPR repeat-containing protein At1g05150-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013419
Physical Location & Seq
Forward (+)
7634479 .. 7636881
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166040.1

Sequence Viewer

Length: 2403 bp
ATGGCGACGAGAGGGAGTAGATCAGAGAAGGTCAAGAGGATATTCTACCAATTTGACACCAACCATGACGGAGGGCTTAACCGGGAAGAAATGGCGGCGCTCGTGGTGGCCGTAAACCCTAGGGTCAAGTTCAGCGACGAGCAGATCAATGCCATTCTGGACGAGGTGTTTCGGACCTACGGCGACTTCATCGACGGCGACAAGGGGCTGACATATGAGGGCCTGTTGCGGACGTATGACGACGGAGCCGGCGACGTGGACCGTGACTTCGACGCGCTTGGGTTGGAGCTGAGCCTGGATGAGGCCAAAGGGGCCTCCATGGCCTCCGAGGCGTCGTCGTCGTCGATAGTCGACGAGCGCATCGCGGAGTCGCAGAAGAAGCAGCGGACGGCGGCCTGGGCGGTGTCGCCGAACCACGGGATCGTGTTCGACGACACGTGGAAGATTGTGGACGACTTGGAGATTCTGGTCAAGAGGTTGAAGGTGAAGCAGGCCGGGAATAATGGCAAGGTGAAGGGTGAGAATCTGGACTCGTATTCGGAGGCTGGGTGGTCTAGAGAATTGGGGCCTTCTTCGGAGATTTCGGAGAAGAGGGTGTTTTGGGAAGAGTCTGGGCATGATTATGCTCTGTTTGTGAAGGAGTTGGGGGTGCTCAGGAGCCGTGCCGACGGAGCAAGGTCGAGGGAGCAAGCTTTCGATGGACACATGGCAATTGGGAGGGTTTTGTATGAGCACCAGCTGTTTAAGGAAGCTTTGGTTAGTTTCAAGAGAGCCTGTGAGTTGCAACCGGTGGATGTTAGGCCACATTTCAGGGCTGGGAATTGCTTGTATGTTCTTGGCAGGTACAAAGAGTCTAAAGAGGAGTTTCTGCTGGCTCTTGAGGCCGCCGAGGCCGGTGGGAATCAGTGGGCCTATTTGCTTCCACAGATTTATGTGAATCTTGGGATTGCTCTTGAAGGTGAAGGTATGGTTTTAAGCGCTTGTGAGTATTATAGGGAAGCTGCTATACTTTGTCCAACTCATTTTAGAGCCTTGAAACTTTTGGGGAGTGCCTTGTTTGGGGTTGGGGAATATAGGGCAGCTGTTAAGGCCTTGGAAGAGGCCATTTTCATGAAACCAGACTATGCCGATGCACATTGTGATTTGGCTTCGGCTTTGCATGCTTTGGGTGAGGACGAGAGGGCAATTGAGGTTTTTCAGAAAGCCATTGATTTGAAACCCGGCCATGTTGATGCCTTGTACAATTTGGGTGGCCTTTATATGGACTTGGGAAGGTTCCAGAGAGCTTCTGAGATGTATACTAGGGTTTTAGCTGTGTGGCCAAACCATTGGCGTGCTCAGCTTAACAGGGCTGTGTCCTTGTTGGGAGCTAGGGAAACTGAGGATGCTAAGAAAGCTTTGAAGGAAGCATTGAAAATGACCAACAGGGTTGAATTGCATGATGCCATTGCACATTTGAAGCAGCTGCAGAAGAAGAAGGTGAAGGCAAATGGGGGTGCCAATGGGGAAGGTTCCTTTGTCACTGTGGAAGCTACAAAATTTAAGGCCGTTGGGGAGAAAACAACATTGAGGCAAGACTTGGCCACCGCACTTGAGATTAGGGCTTTTCAGAGGATTACCAGGTTGAGTCGTTGTGATGTGGATCTCCTTCAAAGGGAGATGAGTGATGGTGATGTACCAGTGTCGTATTCAGGTACTGGTGTCCCGCAGAGGTCCATACGCAAGCCTAACTTGGAAGAAATTCTCCGCAGGTTGCTTAATTTCCTAAAGCCTGAGACTTTTCAAGGAGCTGTGAAAGCCATAAACGAGAGAATACTCTCTGTTTTTGATGATACAGGTGCAGGTAGGGTGGACTTGGGCATGTTTTTTGCTGTTCTAGCCCCTATTTGCAGTGGCCCGCCAGAAAAGCGCAAGCGAATTGCTTTTGATGCGCTCTTGTGGCGCCCTGTGAATGAAGGTGGTGGTTCTCAGATAAGAAAAAATGACGCCACTAAATATATCAAACTGTTGAGAGCTATATATGTCCCTTCCCATGGGGTTAGTGAGATGCTGGAACTCCATGGAGAAACAGATCCTTCAACAATGTCTTACACAGAGTTTCTTGTCATGTTTAACGACCCTGATTGGGGTTTTGGTATCATGTCCACGCTGTTGAAGCTTGAAACTGGGGACAGGAATCGCCATGGTAATCATGTCTGTTCAGTTTGCCGCTATCCAATTATTGGGTCTCGCTTTAAGGAGATAAAATCTCATTTCAGTTTGTGCAATCAATGCTACAGCGAGGGAAAAGTTCCTCCTGCCTATAAGCAGGAAGAGTACAAGTTCAGAGAATATGGAACTGAGGGCGAAGCCATGAAGGACAAGTGCAAGTGCTTTACATTGCAAGCCCATAATGACTCGTAG

Protein Analysis

800

Amino Acids

89.55

Weight (kDa)

6.24

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_CcmH_CycH PF23914 347 - 441 7.8e-06 Cytochrome c-type biogenesis protein H TPR domain
TPR_16 PF13432 348 - 408 2.1e-11 Tetratricopeptide repeat
TPR_11 PF13414 349 - 390 1.7e-06 TPR repeat
TPR_11 PF13414 385 - 424 5.2e-08 TPR repeat
TPR_19 PF14559 394 - 437 4.6e-07 Tetratricopeptide repeat
TPR_1 PF00515 411 - 443 3.2e-06 Tetratricopeptide repeat
TPR_12 PF13424 412 - 474 4.3e-06 Tetratricopeptide repeat
TPR_16 PF13432 414 - 472 1.1e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05150 AT2G32450
fragaria_vesca FvH4_2g39050
malus_domestica MD08G1018000.v1.1 MD15G1017300.v1.1
prunus_persica Prupe.1G370600_v2.0.a1
pyrus_communis pycom08g01560 pycom15g01520
rosa_chinensis RchiOBHm_Chr6g0302151
rosa_laevigata RLG00000011191
rosa_multiflora Rmu_ssc0000160.1_g000016
rosa_roxburghii Rroxscaffold_7G00166040
rosa_rugosa Rorug06G0312600
rosa_samantha Rh6AG425100 Rh6BG477300 Rh6CG438000 Rh6DG425000
rosa_wichuraiana Rw6G036820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 831, 1740, 1832
AccB1I GGYRCC 2 cut(s) 1496, 1941
AccB7I CCANNNNNTGG 1 cut(s) 2222
AccI GTMKAC 2 cut(s) 351, 1298
AccII CGCG 2 cut(s) 275, 365
AclWI GGATC 3 cut(s) 428, 1650, 2066
AcoI YGGCCR 4 cut(s) 108, 1222, 1319, 1581
AcsI RAATTY 2 cut(s) 1538, 1740
AcvI CACGTG 1 cut(s) 438
AcyI GRCGYC 3 cut(s) 332, 1942, 1986
AdeI CACNNNGTG 1 cut(s) 1139
AfaI GTAC 5 cut(s) 845, 1241, 1677, 1696, 2318
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 9 cut(s) 301, 416, 1059, 1261, 1654, 2033, 2125, 2126, 2222
AflIII ACRYGT 1 cut(s) 435
AgeI ACCGGT 1 cut(s) 787
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 3 cut(s) 294, 395, 1619
Alw21I GWGCWC 3 cut(s) 654, 735, 1339
Alw26I GTCTC 2 cut(s) 1769, 2232
AlwI GGATC 3 cut(s) 428, 1650, 2066
AlwNI CAGNNNCTG 1 cut(s) 1697
Aor51HI AGCGCT 1 cut(s) 979
ApeKI GCWGC 5 cut(s) 382, 1001, 1079, 1462, 1465
ApoI RAATTY 2 cut(s) 1538, 1740
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsiGI ACCGGT 1 cut(s) 787
Asp700I GAANNNNTTC 1 cut(s) 1740
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 7 cut(s) 100, 277, 360, 980, 1911, 1933, 1944
AspS9I GGNCC 8 cut(s) 174, 220, 259, 312, 566, 909, 1713, 1895
AsuC2I CCSGG 3 cut(s) 83, 496, 1221
AsuHPI GGTGA 7 cut(s) 496, 523, 530, 971, 1181, 1492, 1682
AvaII GGWCC 3 cut(s) 174, 259, 1713
AvrII CCTAGG 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 1686, 1719
BalI TGGCCA 2 cut(s) 1321, 1583
BanI GGYRCC 2 cut(s) 1496, 1941
BarI GAAGNNNNNNTAC 2 cut(s) 990, 1022
BauI CACGAG 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 438
Bbv12I GWGCWC 3 cut(s) 654, 735, 1339
BbvI GCAGC 5 cut(s) 394, 988, 1091, 1452, 1474
BccI CCATC 2 cut(s) 692, 1661
BceAI ACGGC 6 cut(s) 95, 196, 211, 405, 645, 1532
BciT130I CCWGG 3 cut(s) 296, 397, 1621
BcnI CCSGG 3 cut(s) 83, 496, 1221
BcoDI GTCTC 2 cut(s) 1769, 2232
BfaI CTAG 5 cut(s) 120, 555, 1302, 1371, 1877
BfmI CTRYAG 2 cut(s) 1466, 2275
BfoI RGCGCY 3 cut(s) 101, 981, 1945
BfuAI ACCTGC 3 cut(s) 831, 1740, 1832
BglI GCCNNNNNGGC 4 cut(s) 311, 320, 329, 890
BisI GCNGC 9 cut(s) 96, 383, 393, 885, 1002, 1080, 1463, 1466, 2209
BlnI CCTAGG 1 cut(s) 119
BlpI GCTNAGC 2 cut(s) 290, 1338
BlsI GCNGC 9 cut(s) 97, 384, 394, 886, 1003, 1081, 1464, 1467, 2210
Bme1390I CCNGG 6 cut(s) 83, 296, 397, 496, 1221, 1621
Bme18I GGWCC 3 cut(s) 174, 259, 1713
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 8 cut(s) 174, 220, 259, 312, 566, 909, 1713, 1895
BmiI GGNNCC 8 cut(s) 247, 313, 567, 659, 1277, 1498, 1513, 1943
BmrFI CCNGG 6 cut(s) 83, 296, 397, 496, 1221, 1621
BmrI ACTGGG 1 cut(s) 2175
BmsI GCATC 7 cut(s) 369, 1120, 1222, 1375, 1432, 1918, 2037
BmuI ACTGGG 1 cut(s) 2175
Bpu10I CCTNAGC 1 cut(s) 653
Bpu1102I GCTNAGC 2 cut(s) 290, 1338
BpuEI CTTGAG 2 cut(s) 899, 1613
BpuMI CCSGG 3 cut(s) 83, 496, 1221
BsaAI YACGTR 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 1641
BsaHI GRCGYC 3 cut(s) 332, 1942, 1986
BsaI GGTCTC 1 cut(s) 2232
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 9 cut(s) 301, 416, 1059, 1261, 1654, 2033, 2125, 2126, 2222
Bse118I RCCGGY 3 cut(s) 248, 787, 893
Bse1I ACTGG 3 cut(s) 1679, 1702, 2170
Bse3DI GCAATG 2 cut(s) 1446, 2378
Bse8I GATNNNNATC 1 cut(s) 1641
BseBI CCWGG 3 cut(s) 296, 397, 1621
BseGI GGATG 3 cut(s) 304, 799, 1390
BseJI GATNNNNATC 1 cut(s) 1641
BseLI CCNNNNNNNGG 9 cut(s) 301, 416, 1059, 1261, 1654, 2033, 2125, 2126, 2222
BseMI GCAATG 2 cut(s) 1446, 2378
BseMII CTCAG 8 cut(s) 281, 667, 1281, 1352, 1371, 1764, 1982, 2331
BseNI ACTGG 3 cut(s) 1679, 1702, 2170
BseRI GAGGAG 1 cut(s) 875
BseXI GCAGC 5 cut(s) 394, 988, 1091, 1452, 1474
BseYI CCCAGC 2 cut(s) 545, 815
BsgI GTGCAG 1 cut(s) 1860
Bsh1236I CGCG 2 cut(s) 275, 365
BshNI GGYRCC 2 cut(s) 1496, 1941
BshTI ACCGGT 1 cut(s) 787
BsiHKAI GWGCWC 3 cut(s) 654, 735, 1339
BsiSI CCGG 6 cut(s) 82, 249, 495, 788, 894, 1221
BslFI GGGAC 3 cut(s) 1688, 2009, 2183
BslI CCNNNNNNNGG 9 cut(s) 301, 416, 1059, 1261, 1654, 2033, 2125, 2126, 2222
BsmAI GTCTC 2 cut(s) 1769, 2232
BsmFI GGGAC 3 cut(s) 1688, 2009, 2183
Bso31I GGTCTC 1 cut(s) 2232
Bsp1286I GDGCHC 3 cut(s) 654, 735, 1339
Bsp1407I TGTACA 1 cut(s) 1239
Bsp143I GATC 5 cut(s) 20, 144, 420, 1642, 2071
Bsp1720I GCTNAGC 2 cut(s) 290, 1338
Bsp19I CCATGG 4 cut(s) 318, 2032, 2059, 2182
BspCNI CTCAG 8 cut(s) 282, 666, 1282, 1351, 1372, 1765, 1981, 2332
BspFNI CGCG 2 cut(s) 275, 365
BspHI TCATGA 1 cut(s) 1110
BspLI GGNNCC 8 cut(s) 247, 313, 567, 659, 1277, 1498, 1513, 1943
BspMAI CTGCAG 1 cut(s) 1470
BspMI ACCTGC 3 cut(s) 831, 1740, 1832
BspPI GGATC 3 cut(s) 428, 1650, 2066
BspT107I GGYRCC 2 cut(s) 1496, 1941
BspTNI GGTCTC 1 cut(s) 2232
BsrDI GCAATG 2 cut(s) 1446, 2378
BsrFI RCCGGY 3 cut(s) 248, 787, 893
BsrGI TGTACA 1 cut(s) 1239
BsrI ACTGG 3 cut(s) 1679, 1702, 2170
BssAI RCCGGY 3 cut(s) 248, 787, 893
BssMI GATC 5 cut(s) 20, 144, 420, 1642, 2071
BssNAI GTATAC 1 cut(s) 1299
BssNI GRCGYC 3 cut(s) 332, 1942, 1986
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
Bst1107I GTATAC 1 cut(s) 1299
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 3 cut(s) 296, 397, 1621
Bst4CI ACNGT 3 cut(s) 263, 1525, 2007
Bst6I CTCTTC 4 cut(s) 584, 600, 1092, 2307
BstACI GRCGYC 3 cut(s) 332, 1942, 1986
BstAPI GCANNNNNTGC 1 cut(s) 2271
BstAUI TGTACA 1 cut(s) 1239
BstBAI YACGTR 1 cut(s) 438
BstDEI CTNAG 9 cut(s) 290, 653, 1290, 1338, 1380, 1389, 1773, 1968, 2340
BstDSI CCRYGG 5 cut(s) 318, 415, 2032, 2059, 2182
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 3 cut(s) 304, 799, 1390
BstFNI CGCG 2 cut(s) 275, 365
BstH2I RGCGCY 3 cut(s) 101, 981, 1945
BstHHI GCGC 7 cut(s) 100, 277, 360, 980, 1911, 1933, 1944
BstKTI GATC 5 cut(s) 23, 147, 423, 1645, 2074
BstMAI GTCTC 2 cut(s) 1769, 2232
BstMBI GATC 5 cut(s) 20, 144, 420, 1642, 2071
BstNI CCWGG 3 cut(s) 296, 397, 1621
BstNSI RCATGY 2 cut(s) 1163, 1864
BstSCI CCNGG 6 cut(s) 81, 294, 395, 494, 1219, 1619
BstSFI CTRYAG 2 cut(s) 1466, 2275
BstUI CGCG 2 cut(s) 275, 365
BstV1I GCAGC 5 cut(s) 394, 988, 1091, 1452, 1474
BstX2I RGATCY 2 cut(s) 1642, 2071
BstXI CCANNNNNNTGG 1 cut(s) 1329
BstYI RGATCY 2 cut(s) 1642, 2071
BstZ17I GTATAC 1 cut(s) 1299
BtgI CCRYGG 5 cut(s) 318, 415, 2032, 2059, 2182
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 3 cut(s) 304, 799, 1390
BtsI GCAGTG 1 cut(s) 1897
BtsIMutI CAGTG 4 cut(s) 911, 1521, 1686, 1897
BveI ACCTGC 3 cut(s) 831, 1740, 1832
CaiI CAGNNNCTG 1 cut(s) 1697
CciI TCATGA 1 cut(s) 1110
CfoI GCGC 7 cut(s) 100, 277, 360, 980, 1911, 1933, 1944
Cfr10I RCCGGY 3 cut(s) 248, 787, 893
Cfr13I GGNCC 8 cut(s) 174, 220, 259, 312, 566, 909, 1713, 1895
CseI GACGC 3 cut(s) 281, 321, 1994
CsiI ACCWGGT 1 cut(s) 1619
Csp6I GTAC 5 cut(s) 844, 1240, 1676, 1695, 2317
CspAI ACCGGT 1 cut(s) 787
CspCI CAANNNNNGTGG 4 cut(s) 1231, 1266, 1573, 1608
CviQI GTAC 5 cut(s) 844, 1240, 1676, 1695, 2317
DdeI CTNAG 9 cut(s) 290, 653, 1290, 1338, 1380, 1389, 1773, 1968, 2340
DinI GGCGCC 1 cut(s) 1943
DpnI GATC 5 cut(s) 22, 146, 422, 1644, 2073
DpnII GATC 5 cut(s) 20, 144, 420, 1642, 2071
DraIII CACNNNGTG 1 cut(s) 1139
EaeI YGGCCR 4 cut(s) 108, 1222, 1319, 1581
Eam1104I CTCTTC 4 cut(s) 584, 600, 1092, 2307
EarI CTCTTC 4 cut(s) 584, 600, 1092, 2307
Eco130I CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
Eco147I AGGCCT 1 cut(s) 1091
Eco31I GGTCTC 1 cut(s) 2232
Eco47I GGWCC 3 cut(s) 174, 259, 1713
Eco47III AGCGCT 1 cut(s) 979
Eco72I CACGTG 1 cut(s) 438
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 3 cut(s) 220, 312, 566
EcoRII CCWGG 3 cut(s) 294, 395, 1619
EcoT14I CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
EgeI GGCGCC 1 cut(s) 1943
EheI GGCGCC 1 cut(s) 1943
ErhI CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
FalI AAGNNNNNCTT 2 cut(s) 1715, 1747
FaqI GGGAC 3 cut(s) 1688, 2009, 2183
FauI CCCGC 2 cut(s) 1713, 1905
FauNDI CATATG 1 cut(s) 214
FblI GTMKAC 2 cut(s) 351, 1298
Fnu4HI GCNGC 9 cut(s) 96, 383, 393, 885, 1002, 1080, 1463, 1466, 2209
FokI GGATG 3 cut(s) 311, 806, 1397
Fsp4HI GCNGC 9 cut(s) 96, 383, 393, 885, 1002, 1080, 1463, 1466, 2209
FspBI CTAG 5 cut(s) 120, 555, 1302, 1371, 1877
GlaI GCGC 7 cut(s) 99, 276, 359, 979, 1910, 1932, 1943
GluI GCNGC 9 cut(s) 96, 383, 393, 885, 1002, 1080, 1463, 1466, 2209
GsaI CCCAGC 2 cut(s) 549, 819
HaeII RGCGCY 3 cut(s) 101, 981, 1945
HapII CCGG 6 cut(s) 82, 249, 495, 788, 894, 1221
HgaI GACGC 3 cut(s) 281, 321, 1994
HhaI GCGC 7 cut(s) 100, 277, 360, 980, 1911, 1933, 1944
Hin1I GRCGYC 3 cut(s) 332, 1942, 1986
Hin6I GCGC 7 cut(s) 98, 275, 358, 978, 1909, 1931, 1942
HinP1I GCGC 7 cut(s) 98, 275, 358, 978, 1909, 1931, 1942
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 4 cut(s) 690, 750, 1395, 2156
HpaII CCGG 6 cut(s) 82, 249, 495, 788, 894, 1221
HphI GGTGA 7 cut(s) 496, 523, 530, 971, 1181, 1492, 1682
Hpy166II GTNNAC 7 cut(s) 115, 259, 352, 451, 1299, 1852, 2145
Hpy8I GTNNAC 7 cut(s) 115, 259, 352, 451, 1299, 1852, 2145
HpyCH4III ACNGT 3 cut(s) 263, 1525, 2007
HpyCH4IV ACGT 3 cut(s) 233, 255, 437
HpyF3I CTNAG 9 cut(s) 290, 653, 1290, 1338, 1380, 1389, 1773, 1968, 2340
HpySE526I ACGT 3 cut(s) 233, 255, 437
Hsp92I GRCGYC 3 cut(s) 332, 1942, 1986
HspAI GCGC 7 cut(s) 98, 275, 358, 978, 1909, 1931, 1942
KasI GGCGCC 1 cut(s) 1941
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 5 cut(s) 20, 144, 420, 1642, 2071
LmnI GCTCC 7 cut(s) 245, 286, 657, 671, 685, 1367, 1787
Lsp1109I GCAGC 5 cut(s) 394, 988, 1091, 1452, 1474
LweI GCATC 7 cut(s) 369, 1120, 1222, 1375, 1432, 1918, 2037
MabI ACCWGGT 1 cut(s) 1619
MaeI CTAG 5 cut(s) 120, 555, 1302, 1371, 1877
MaeII ACGT 3 cut(s) 233, 255, 437
MaeIII GTNAC 2 cut(s) 263, 1519
MalI GATC 5 cut(s) 22, 146, 422, 1644, 2073
MboI GATC 5 cut(s) 20, 144, 420, 1642, 2071
MfeI CAATTG 2 cut(s) 711, 1185
MflI RGATCY 2 cut(s) 1642, 2071
MhlI GDGCHC 3 cut(s) 654, 735, 1339
MlsI TGGCCA 2 cut(s) 1321, 1583
MluNI TGGCCA 2 cut(s) 1321, 1583
Mly113I GGCGCC 1 cut(s) 1942
MlyI GAGTC 6 cut(s) 377, 524, 617, 860, 1636, 2390
MmeI TCCRAC 2 cut(s) 264, 1040
Mox20I TGGCCA 2 cut(s) 1321, 1583
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 1740
MscI TGGCCA 2 cut(s) 1321, 1583
MseI TTAA 9 cut(s) 78, 744, 974, 1086, 1344, 1542, 1758, 2112, 2235
MslI CAYNNNNRTG 4 cut(s) 621, 1109, 1230, 1332
Msp20I TGGCCA 2 cut(s) 1321, 1583
MspA1I CMGCKG 4 cut(s) 385, 739, 1082, 1465
MspI CCGG 6 cut(s) 82, 249, 495, 788, 894, 1221
MspR9I CCNGG 6 cut(s) 83, 296, 397, 496, 1221, 1621
MunI CAATTG 2 cut(s) 711, 1185
MvaI CCWGG 3 cut(s) 296, 397, 1621
MvnI CGCG 2 cut(s) 275, 365
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 1942
NciI CCSGG 3 cut(s) 83, 496, 1221
NcoI CCATGG 4 cut(s) 318, 2032, 2059, 2182
NdeI CATATG 1 cut(s) 214
NdeII GATC 5 cut(s) 20, 144, 420, 1642, 2071
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 8 cut(s) 247, 313, 567, 659, 1277, 1498, 1513, 1943
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 2 cut(s) 263, 1519
NspI RCATGY 2 cut(s) 1163, 1864
PaeI GCATGC 1 cut(s) 1163
PagI TCATGA 1 cut(s) 1110
PceI AGGCCT 1 cut(s) 1091
PcsI WCGNNNNNNNCGW 4 cut(s) 108, 249, 341, 429
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 1740
PfeI GAWTC 5 cut(s) 463, 523, 901, 937, 2176
PflMI CCANNNNNTGG 1 cut(s) 2222
PinAI ACCGGT 1 cut(s) 787
PkrI GCNGC 9 cut(s) 97, 384, 394, 886, 1003, 1081, 1464, 1467, 2210
PleI GAGTC 6 cut(s) 376, 524, 616, 859, 1635, 2390
PluTI GGCGCC 1 cut(s) 1945
PmaCI CACGTG 1 cut(s) 438
PmlI CACGTG 1 cut(s) 438
PpsI GAGTC 6 cut(s) 376, 524, 616, 859, 1635, 2390
Ppu21I YACGTR 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 294, 395, 1619
PspCI CACGTG 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 545, 815
PspGI CCWGG 3 cut(s) 294, 395, 1619
PspN4I GGNNCC 8 cut(s) 247, 313, 567, 659, 1277, 1498, 1513, 1943
PspPI GGNCC 8 cut(s) 174, 220, 259, 312, 566, 909, 1713, 1895
PstI CTGCAG 1 cut(s) 1470
PstNI CAGNNNCTG 1 cut(s) 1697
PsuI RGATCY 2 cut(s) 1642, 2071
PvuII CAGCTG 3 cut(s) 739, 1082, 1465
RsaI GTAC 5 cut(s) 845, 1241, 1677, 1696, 2318
RsaNI GTAC 5 cut(s) 844, 1240, 1676, 1695, 2317
RseI CAYNNNNRTG 4 cut(s) 621, 1109, 1230, 1332
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 9 cut(s) 78, 744, 974, 1086, 1344, 1542, 1758, 2112, 2235
SatI GCNGC 9 cut(s) 96, 383, 393, 885, 1002, 1080, 1463, 1466, 2209
Sau3AI GATC 5 cut(s) 20, 144, 420, 1642, 2071
Sau96I GGNCC 8 cut(s) 174, 220, 259, 312, 566, 909, 1713, 1895
SchI GAGTC 6 cut(s) 377, 524, 617, 860, 1636, 2390
ScrFI CCNGG 6 cut(s) 83, 296, 397, 496, 1221, 1621
SduI GDGCHC 3 cut(s) 654, 735, 1339
SexAI ACCWGGT 1 cut(s) 1619
SfaNI GCATC 7 cut(s) 369, 1120, 1222, 1375, 1432, 1918, 2037
SfcI CTRYAG 2 cut(s) 1466, 2275
SfiI GGCCNNNNNGGCC 3 cut(s) 311, 320, 890
SfoI GGCGCC 1 cut(s) 1943
SinI GGWCC 3 cut(s) 174, 259, 1713
SmiMI CAYNNNNRTG 4 cut(s) 621, 1109, 1230, 1332
SmlI CTYRAG 2 cut(s) 878, 1592
SmoI CTYRAG 2 cut(s) 878, 1592
SphI GCATGC 1 cut(s) 1163
SseBI AGGCCT 1 cut(s) 1091
SspDI GGCGCC 1 cut(s) 1941
SspMI CTAG 5 cut(s) 120, 555, 1302, 1371, 1877
StuI AGGCCT 1 cut(s) 1091
StyD4I CCNGG 6 cut(s) 81, 294, 395, 494, 1219, 1619
StyI CCWWGG 6 cut(s) 119, 318, 1092, 2032, 2059, 2182
TaaI ACNGT 3 cut(s) 263, 1525, 2007
TaiI ACGT 3 cut(s) 236, 258, 440
TaqI TCGA 7 cut(s) 192, 270, 344, 351, 429, 680, 696
TatI WGTACW 2 cut(s) 1239, 2316
TauI GCSGC 4 cut(s) 98, 395, 887, 2211
TfiI GAWTC 5 cut(s) 463, 523, 901, 937, 2176
Tru1I TTAA 9 cut(s) 78, 744, 974, 1086, 1344, 1542, 1758, 2112, 2235
Tru9I TTAA 9 cut(s) 78, 744, 974, 1086, 1344, 1542, 1758, 2112, 2235
TscAI CASTG 4 cut(s) 911, 1528, 1686, 1897
TseFI GTSAC 2 cut(s) 263, 1519
TseI GCWGC 5 cut(s) 382, 1001, 1079, 1462, 1465
Tsp45I GTSAC 2 cut(s) 263, 1519
TspDTI ATGAA 5 cut(s) 178, 1099, 1127, 1968, 2369
TspGWI ACGGA 3 cut(s) 84, 258, 684
TspRI CASTG 4 cut(s) 911, 1528, 1686, 1897
Van91I CCANNNNNTGG 1 cut(s) 2222
VpaK11BI GGWCC 3 cut(s) 174, 259, 1713
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 1538, 1740
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 2 cut(s) 1163, 1864
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 351, 1298
XmnI GAANNNNTTC 1 cut(s) 1740
XspI CTAG 5 cut(s) 120, 555, 1302, 1371, 1877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.