Rh6CG438000

TPR repeat-containing protein At1g05150-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013419
Physical Location & Seq
Reverse (-)
61705767 .. 61709219
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG438000.1

Sequence Viewer

Length: 2412 bp
ATGGCGACGAGAGGGAGCAGATCAGAGAAGGTCAAGAGGATTTTCTACCAATTTGACGCCAACCATGACGGAGGGCTTAACCGGGAGGAAATGGCGGCGCTCGTGGTGGCCGTAAACCCTAGGGTCAAGTTCAGCGACGAGCAGATCAATGCCATTTTGGACGAGGTGTTTCGGACCTACGGCGACTTCATCGACGGGGACAAGGGGCTGACGTATGAGGGCCTGTTGCGGACGTATGACGACGGAGCCGGCGACGTGGACCGTGACTTCGACGCGCTTGGGTTGGAGCTGAGCCTGGATGAGGCCAAAGGGGCTTCCATGGCGTCCGAGGCGTCGTCGTCGTCGATAGTGGACGAGCGCATCGCGGAGTCGCAGAAGAAGCAGCGGACGGCGGCGTGGGCGGTGTCGCCGAACCACGGGATCGTGTTCGACGACACGTGGAAGATTGTGGACGATTTGGAGATTCTGGTCAAGAGGTTGAAGGTGAAGCAGGCGGGGAATAATAATGGCAAGGTCAAGGGTGAGAATCTGGACTCGTATTCGGAGGCTGGGTGGTCTAGAGAATTGGGGCCTTCTTCGGAGATTTCGGACAAGAGGGTGTTTTGGGAAGAGTCTGGGCATGATTATGCTCTGTTTGTGAAGGAATTGGGGGTGCTCAGGAGCCGTGCCGACGGAGCAAGGTCGAGGGAGCAAGCTTTCGATGGACACATGGCAATTGGGAGGGTTTTGTATGAGCACCAGCTGTTTAAGGAAGCTTTGGTTAGTTTCAAGCGAGCCTGTGAGTTGCAACCGGTGGATGTTAGGCCGCATTTCAGGGCTGGGAATTGCTTGTATGTTCTTGGCAGGTACAAAGAGTCTAAAGAGGAGTTTCTGCTGGCTCTTGAGGCCGCCGAGGCCGGTGGGAATCAGTGGGCCTATTTGCTTCCACAGATTTATGTGAATCTCGGGATTGCTGTTGAAGGTGAAGGTATGGTTTTAAGTGCTTGCGAGTATTATAGGGAAGCTGCTATACTTTGTCCCACTCATTTTAGAGCCTTGAAACTTTTGGGGAGTGCCTTGTTTGGGGTTGGGGAATATAGGGCAGCTGTTAAGGCCTTGGAAGAGTCCATTTTCATGAAACCAGACTATGCCGATGCACATTGTGATTTGGCTTCGGCTTTGCATGCTCTGGGTGAGGATGAGAGGGCAATCGAGGTTTTTCAGAAAGCCATTGATTTGAAACCCGGCCATGTTGATGCCTTGTACAATTTGGGTGGCCTTTATATGGACTTGGGAAGGTTCCAGAGAGCTTCTGAGATGTATACTAGGGTTTTAGCTGTGTGGCCAAACCATTGGCGTGCTCAGCTTAACAGGGCTGTGTCCTTGTTGGGAGCTAGGGAAACTGAGGATGCTAAGAAAGCTTTGAAGGAAGCATTGAAAATGACCAACAGGGTTGAATTGCATGATGCCATTGCACATTTGAAGCAGCTGCAGAAGAAGAAGAAGGTGAAGGCAAATGGGGGGGGTGCCAATGGGGAAGGTTCCTTTGTCACTGTCGACGCTACAAAATTTAAGGCCGTTGGGGAGAAAACAACATTGAGGCAAGACTTAGCCACTGCACTTGAGATTAGGGCTTTTCAGAGGATTACCAGGTTGAGTCGTTGTGATGTGGATCTCCTTAAAAGGGAGATGAGTGATGGTGATGTACCAGTGTCGTATTCAGGTACTGGTGTCCCGCAGAGGTCCATACGCAAGCCTAACTTGGAAGAAATTCTCCGCAGGTTGCTTAATTTCCTAAAGCCTGAGACTTTTCAAGGAGCTGTGAAAGCCATAAACGAGAGAATACTCTCTGTTTTTGATGATACAGGTGCAGGTAGGGTGGACTTGGGCATGTTTTTAGCTGTTCTAGCCCCTATTTGCAGTGGCCCGCCAGAAAAGCGCAAGCGAATTGCTTTTGATGCGCTCTTGTGGCGCCCTCTGAATGAAGGTGGTGGTTCTCAGATAAGAAAAGATGACGCCACTAAATATATCAAACTGTTGAGAGCTATATATGTCCCTTCCCATGGGGTTAGTGAGATGCTGGAACTCCATGGAGAAACAGATCCTTCAACAATGTCTTACACAGAGTTTCTTGTCATGTTTAACGACCCTGATTGGGGTTTTGGTATCATGTCCACGCTGTTGAAGCTTGAAACTGGGGACAGGAATCGCCATGGTAATCATGTCTGTTCAGTTTGCCGCTATCCAATTATTGGGTCTCGCTTTAAGGAGATAAAATCTCATTTCAGTTTGTGCAATCAATGCTACAGCGAGGGAAAAGTTCCTCCTGCCTATAAGCAGGAAGAGTACAAGTTCAGAGAATATGGAACTGAGGGCGAAGCCATGAAAGACAAGTGCAAGTGCTTTACATTGCAAGCCCATAATGACCCGTAG

Protein Analysis

803

Amino Acids

89.78

Weight (kDa)

6.31

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 349 - 409 3e-10 Tetratricopeptide repeat
TPR_11 PF13414 386 - 425 5.3e-08 TPR repeat
TPR_19 PF14559 395 - 438 4.6e-07 Tetratricopeptide repeat
TPR_1 PF00515 412 - 444 3.2e-06 Tetratricopeptide repeat
TPR_12 PF13424 413 - 475 4.4e-06 Tetratricopeptide repeat
TPR_16 PF13432 415 - 473 1.1e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05150 AT2G32450
fragaria_vesca FvH4_2g39050
malus_domestica MD08G1018000.v1.1 MD15G1017300.v1.1
prunus_persica Prupe.1G370600_v2.0.a1
pyrus_communis pycom08g01560 pycom15g01520
rosa_chinensis RchiOBHm_Chr6g0302151
rosa_laevigata RLG00000011191
rosa_multiflora Rmu_ssc0000160.1_g000016
rosa_roxburghii Rroxscaffold_7G00166040
rosa_rugosa Rorug06G0312600
rosa_samantha Rh6AG425100 Rh6BG477300 Rh6CG438000 Rh6DG425000
rosa_wichuraiana Rw6G036820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 834, 1749, 1841
AccB1I GGYRCC 2 cut(s) 1505, 1950
AccB7I CCANNNNNTGG 1 cut(s) 2231
AccI GTMKAC 2 cut(s) 1301, 1536
AccII CGCG 2 cut(s) 275, 365
AclWI GGATC 3 cut(s) 428, 1659, 2075
AcoI YGGCCR 3 cut(s) 108, 1225, 1322
AcsI RAATTY 2 cut(s) 1547, 1749
AcvI CACGTG 1 cut(s) 438
AcyI GRCGYC 5 cut(s) 57, 323, 332, 1951, 1995
AdeI CACNNNGTG 1 cut(s) 1142
AfaI GTAC 5 cut(s) 848, 1244, 1686, 1705, 2327
AfiI CCNNNNNNNGG 9 cut(s) 301, 416, 1062, 1264, 1663, 2042, 2134, 2135, 2231
AflIII ACRYGT 1 cut(s) 435
AgeI ACCGGT 1 cut(s) 790
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 294, 1628
Alw21I GWGCWC 3 cut(s) 657, 738, 1342
Alw26I GTCTC 2 cut(s) 1778, 2241
AlwI GGATC 3 cut(s) 428, 1659, 2075
AlwNI CAGNNNCTG 1 cut(s) 1706
Ama87I CYCGRG 1 cut(s) 944
ApeKI GCWGC 5 cut(s) 382, 1004, 1082, 1465, 1468
ApoI RAATTY 2 cut(s) 1547, 1749
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsiGI ACCGGT 1 cut(s) 790
Asp700I GAANNNNTTC 1 cut(s) 1749
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 6 cut(s) 100, 277, 360, 1920, 1942, 1953
AspS9I GGNCC 7 cut(s) 174, 220, 259, 569, 912, 1722, 1904
AsuC2I CCSGG 2 cut(s) 83, 1224
AsuHPI GGTGA 6 cut(s) 496, 533, 974, 1184, 1498, 1691
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 3 cut(s) 174, 259, 1722
AvrII CCTAGG 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 1695, 1728
BalI TGGCCA 1 cut(s) 1324
BanI GGYRCC 2 cut(s) 1505, 1950
BarI GAAGNNNNNNTAC 2 cut(s) 993, 1025
BauI CACGAG 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 438
Bbv12I GWGCWC 3 cut(s) 657, 738, 1342
BbvI GCAGC 5 cut(s) 394, 991, 1094, 1455, 1477
BccI CCATC 2 cut(s) 695, 1670
BceAI ACGGC 5 cut(s) 95, 196, 405, 648, 1541
BciT130I CCWGG 2 cut(s) 296, 1630
BcnI CCSGG 2 cut(s) 83, 1224
BcoDI GTCTC 2 cut(s) 1778, 2241
BfaI CTAG 5 cut(s) 120, 558, 1305, 1374, 1886
BfmI CTRYAG 2 cut(s) 1469, 2284
BfoI RGCGCY 2 cut(s) 101, 1954
BfuAI ACCTGC 3 cut(s) 834, 1749, 1841
BglI GCCNNNNNGGC 2 cut(s) 311, 893
BlnI CCTAGG 1 cut(s) 119
BlpI GCTNAGC 2 cut(s) 290, 1341
Bme1390I CCNGG 4 cut(s) 83, 296, 1224, 1630
Bme18I GGWCC 3 cut(s) 174, 259, 1722
BmeT110I CYCGRG 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 7 cut(s) 174, 220, 259, 569, 912, 1722, 1904
BmiI GGNNCC 7 cut(s) 247, 570, 662, 1280, 1507, 1522, 1952
BmrFI CCNGG 4 cut(s) 83, 296, 1224, 1630
BmrI ACTGGG 1 cut(s) 2184
BmsI GCATC 7 cut(s) 369, 1123, 1225, 1378, 1435, 1927, 2046
BmuI ACTGGG 1 cut(s) 2184
Bpu10I CCTNAGC 1 cut(s) 656
Bpu1102I GCTNAGC 2 cut(s) 290, 1341
BpuEI CTTGAG 2 cut(s) 902, 1622
BpuMI CCSGG 2 cut(s) 83, 1224
BsaAI YACGTR 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 1650
BsaHI GRCGYC 5 cut(s) 57, 323, 332, 1951, 1995
BsaI GGTCTC 1 cut(s) 2241
BsaJI CCNNGG 9 cut(s) 119, 318, 327, 415, 891, 1095, 2041, 2068, 2191
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 9 cut(s) 301, 416, 1062, 1264, 1663, 2042, 2134, 2135, 2231
Bse118I RCCGGY 3 cut(s) 248, 790, 896
Bse1I ACTGG 3 cut(s) 1688, 1711, 2179
Bse3DI GCAATG 2 cut(s) 1449, 2387
Bse8I GATNNNNATC 1 cut(s) 1650
BseBI CCWGG 2 cut(s) 296, 1630
BseDI CCNNGG 9 cut(s) 119, 318, 327, 415, 891, 1095, 2041, 2068, 2191
BseGI GGATG 4 cut(s) 304, 802, 1183, 1393
BseJI GATNNNNATC 1 cut(s) 1650
BseLI CCNNNNNNNGG 9 cut(s) 301, 416, 1062, 1264, 1663, 2042, 2134, 2135, 2231
BseMI GCAATG 2 cut(s) 1449, 2387
BseMII CTCAG 8 cut(s) 281, 670, 1284, 1355, 1374, 1773, 1991, 2340
BseNI ACTGG 3 cut(s) 1688, 1711, 2179
BseRI GAGGAG 1 cut(s) 878
BseXI GCAGC 5 cut(s) 394, 991, 1094, 1455, 1477
BseYI CCCAGC 2 cut(s) 548, 818
BsgI GTGCAG 2 cut(s) 1581, 1869
Bsh1236I CGCG 2 cut(s) 275, 365
BshNI GGYRCC 2 cut(s) 1505, 1950
BshTI ACCGGT 1 cut(s) 790
BsiHKAI GWGCWC 3 cut(s) 657, 738, 1342
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 5 cut(s) 82, 249, 791, 897, 1224
BslFI GGGAC 5 cut(s) 212, 1002, 1697, 2018, 2192
BslI CCNNNNNNNGG 9 cut(s) 301, 416, 1062, 1264, 1663, 2042, 2134, 2135, 2231
BsmAI GTCTC 2 cut(s) 1778, 2241
BsmFI GGGAC 5 cut(s) 212, 1002, 1697, 2018, 2192
Bso31I GGTCTC 1 cut(s) 2241
BsoBI CYCGRG 1 cut(s) 944
Bsp1286I GDGCHC 3 cut(s) 657, 738, 1342
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 5 cut(s) 20, 144, 420, 1651, 2080
Bsp1720I GCTNAGC 2 cut(s) 290, 1341
Bsp19I CCATGG 4 cut(s) 318, 2041, 2068, 2191
BspCNI CTCAG 8 cut(s) 282, 669, 1285, 1354, 1375, 1774, 1990, 2341
BspFNI CGCG 2 cut(s) 275, 365
BspHI TCATGA 1 cut(s) 1113
BspLI GGNNCC 7 cut(s) 247, 570, 662, 1280, 1507, 1522, 1952
BspMAI CTGCAG 1 cut(s) 1473
BspMI ACCTGC 3 cut(s) 834, 1749, 1841
BspPI GGATC 3 cut(s) 428, 1659, 2075
BspT107I GGYRCC 2 cut(s) 1505, 1950
BspTNI GGTCTC 1 cut(s) 2241
BsrDI GCAATG 2 cut(s) 1449, 2387
BsrFI RCCGGY 3 cut(s) 248, 790, 896
BsrGI TGTACA 1 cut(s) 1242
BsrI ACTGG 3 cut(s) 1688, 1711, 2179
BssAI RCCGGY 3 cut(s) 248, 790, 896
BssECI CCNNGG 9 cut(s) 119, 318, 327, 415, 891, 1095, 2041, 2068, 2191
BssMI GATC 5 cut(s) 20, 144, 420, 1651, 2080
BssNAI GTATAC 1 cut(s) 1302
BssNI GRCGYC 5 cut(s) 57, 323, 332, 1951, 1995
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 6 cut(s) 119, 318, 1095, 2041, 2068, 2191
Bst1107I GTATAC 1 cut(s) 1302
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 296, 1630
Bst4CI ACNGT 3 cut(s) 263, 1534, 2016
Bst6I CTCTTC 3 cut(s) 603, 1095, 2316
BstACI GRCGYC 5 cut(s) 57, 323, 332, 1951, 1995
BstAPI GCANNNNNTGC 1 cut(s) 2280
BstAUI TGTACA 1 cut(s) 1242
BstBAI YACGTR 1 cut(s) 438
BstDSI CCRYGG 5 cut(s) 318, 415, 2041, 2068, 2191
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 4 cut(s) 304, 802, 1183, 1393
BstFNI CGCG 2 cut(s) 275, 365
BstH2I RGCGCY 2 cut(s) 101, 1954
BstHHI GCGC 6 cut(s) 100, 277, 360, 1920, 1942, 1953
BstKTI GATC 5 cut(s) 23, 147, 423, 1654, 2083
BstMAI GTCTC 2 cut(s) 1778, 2241
BstMBI GATC 5 cut(s) 20, 144, 420, 1651, 2080
BstNI CCWGG 2 cut(s) 296, 1630
BstNSI RCATGY 2 cut(s) 1166, 1873
BstSCI CCNGG 4 cut(s) 81, 294, 1222, 1628
BstSFI CTRYAG 2 cut(s) 1469, 2284
BstUI CGCG 2 cut(s) 275, 365
BstV1I GCAGC 5 cut(s) 394, 991, 1094, 1455, 1477
BstX2I RGATCY 2 cut(s) 1651, 2080
BstXI CCANNNNNNTGG 1 cut(s) 1332
BstYI RGATCY 2 cut(s) 1651, 2080
BstZ17I GTATAC 1 cut(s) 1302
BtgI CCRYGG 5 cut(s) 318, 415, 2041, 2068, 2191
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 4 cut(s) 304, 802, 1183, 1393
BtsI GCAGTG 2 cut(s) 1593, 1906
BtsIMutI CAGTG 5 cut(s) 914, 1530, 1593, 1695, 1906
BveI ACCTGC 3 cut(s) 834, 1749, 1841
CaiI CAGNNNCTG 1 cut(s) 1706
CciI TCATGA 1 cut(s) 1113
CfoI GCGC 6 cut(s) 100, 277, 360, 1920, 1942, 1953
Cfr10I RCCGGY 3 cut(s) 248, 790, 896
Cfr13I GGNCC 7 cut(s) 174, 220, 259, 569, 912, 1722, 1904
CseI GACGC 6 cut(s) 65, 281, 312, 321, 1547, 2003
CsiI ACCWGGT 1 cut(s) 1628
Csp6I GTAC 5 cut(s) 847, 1243, 1685, 1704, 2326
CspAI ACCGGT 1 cut(s) 790
CspCI CAANNNNNGTGG 4 cut(s) 1234, 1269, 1582, 1617
CviQI GTAC 5 cut(s) 847, 1243, 1685, 1704, 2326
DinI GGCGCC 1 cut(s) 1952
DpnI GATC 5 cut(s) 22, 146, 422, 1653, 2082
DpnII GATC 5 cut(s) 20, 144, 420, 1651, 2080
DraIII CACNNNGTG 1 cut(s) 1142
EaeI YGGCCR 3 cut(s) 108, 1225, 1322
Eam1104I CTCTTC 3 cut(s) 603, 1095, 2316
EarI CTCTTC 3 cut(s) 603, 1095, 2316
Eco130I CCWWGG 6 cut(s) 119, 318, 1095, 2041, 2068, 2191
Eco147I AGGCCT 1 cut(s) 1094
Eco31I GGTCTC 1 cut(s) 2241
Eco47I GGWCC 3 cut(s) 174, 259, 1722
Eco72I CACGTG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 944
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 220, 569
EcoRII CCWGG 2 cut(s) 294, 1628
EcoT14I CCWWGG 6 cut(s) 119, 318, 1095, 2041, 2068, 2191
EgeI GGCGCC 1 cut(s) 1952
EheI GGCGCC 1 cut(s) 1952
ErhI CCWWGG 6 cut(s) 119, 318, 1095, 2041, 2068, 2191
FalI AAGNNNNNCTT 2 cut(s) 1724, 1756
FaqI GGGAC 5 cut(s) 212, 1002, 1697, 2018, 2192
FauI CCCGC 3 cut(s) 487, 1722, 1914
FblI GTMKAC 2 cut(s) 1301, 1536
FokI GGATG 4 cut(s) 311, 809, 1190, 1400
FspBI CTAG 5 cut(s) 120, 558, 1305, 1374, 1886
GlaI GCGC 6 cut(s) 99, 276, 359, 1919, 1941, 1952
GsaI CCCAGC 2 cut(s) 552, 822
HaeII RGCGCY 2 cut(s) 101, 1954
HapII CCGG 5 cut(s) 82, 249, 791, 897, 1224
HgaI GACGC 6 cut(s) 65, 281, 312, 321, 1547, 2003
HhaI GCGC 6 cut(s) 100, 277, 360, 1920, 1942, 1953
Hin1I GRCGYC 5 cut(s) 57, 323, 332, 1951, 1995
Hin6I GCGC 6 cut(s) 98, 275, 358, 1918, 1940, 1951
HinP1I GCGC 6 cut(s) 98, 275, 358, 1918, 1940, 1951
HincII GTYRAC 1 cut(s) 1537
HindII GTYRAC 1 cut(s) 1537
HindIII AAGCTT 4 cut(s) 693, 753, 1398, 2165
HpaII CCGG 5 cut(s) 82, 249, 791, 897, 1224
HphI GGTGA 6 cut(s) 496, 533, 974, 1184, 1498, 1691
Hpy166II GTNNAC 8 cut(s) 115, 259, 352, 451, 1302, 1537, 1861, 2154
Hpy188III TCNNGA 9 cut(s) 34, 472, 530, 558, 658, 881, 946, 1114, 1282
Hpy8I GTNNAC 8 cut(s) 115, 259, 352, 451, 1302, 1537, 1861, 2154
HpyCH4III ACNGT 3 cut(s) 263, 1534, 2016
HpyCH4IV ACGT 4 cut(s) 212, 233, 255, 437
HpySE526I ACGT 4 cut(s) 212, 233, 255, 437
Hsp92I GRCGYC 5 cut(s) 57, 323, 332, 1951, 1995
HspAI GCGC 6 cut(s) 98, 275, 358, 1918, 1940, 1951
KasI GGCGCC 1 cut(s) 1950
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 5 cut(s) 20, 144, 420, 1651, 2080
LmnI GCTCC 8 cut(s) 15, 245, 286, 660, 674, 688, 1370, 1796
Lsp1109I GCAGC 5 cut(s) 394, 991, 1094, 1455, 1477
LweI GCATC 7 cut(s) 369, 1123, 1225, 1378, 1435, 1927, 2046
MabI ACCWGGT 1 cut(s) 1628
MaeI CTAG 5 cut(s) 120, 558, 1305, 1374, 1886
MaeII ACGT 4 cut(s) 212, 233, 255, 437
MaeIII GTNAC 2 cut(s) 263, 1528
MalI GATC 5 cut(s) 22, 146, 422, 1653, 2082
MboI GATC 5 cut(s) 20, 144, 420, 1651, 2080
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 2 cut(s) 1651, 2080
MhlI GDGCHC 3 cut(s) 657, 738, 1342
MlsI TGGCCA 1 cut(s) 1324
MluNI TGGCCA 1 cut(s) 1324
Mly113I GGCGCC 1 cut(s) 1951
MlyI GAGTC 6 cut(s) 377, 527, 620, 863, 1112, 1645
MmeI TCCRAC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 1324
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 1749
MscI TGGCCA 1 cut(s) 1324
MslI CAYNNNNRTG 4 cut(s) 624, 1112, 1233, 1335
Msp20I TGGCCA 1 cut(s) 1324
MspA1I CMGCKG 4 cut(s) 385, 742, 1085, 1468
MspI CCGG 5 cut(s) 82, 249, 791, 897, 1224
MspR9I CCNGG 4 cut(s) 83, 296, 1224, 1630
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 2 cut(s) 296, 1630
MvnI CGCG 2 cut(s) 275, 365
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 1951
NciI CCSGG 2 cut(s) 83, 1224
NcoI CCATGG 4 cut(s) 318, 2041, 2068, 2191
NdeII GATC 5 cut(s) 20, 144, 420, 1651, 2080
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 7 cut(s) 247, 570, 662, 1280, 1507, 1522, 1952
NmeAIII GCCGAG 1 cut(s) 916
NmuCI GTSAC 2 cut(s) 263, 1528
NspI RCATGY 2 cut(s) 1166, 1873
PaeI GCATGC 1 cut(s) 1166
PagI TCATGA 1 cut(s) 1113
PceI AGGCCT 1 cut(s) 1094
PcsI WCGNNNNNNNCGW 4 cut(s) 108, 249, 341, 429
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 1749
PfeI GAWTC 5 cut(s) 463, 526, 904, 940, 2185
PflMI CCANNNNNTGG 1 cut(s) 2231
PinAI ACCGGT 1 cut(s) 790
PleI GAGTC 6 cut(s) 376, 527, 619, 862, 1111, 1644
PluTI GGCGCC 1 cut(s) 1954
PmaCI CACGTG 1 cut(s) 438
PmlI CACGTG 1 cut(s) 438
PpsI GAGTC 6 cut(s) 376, 527, 619, 862, 1111, 1644
Ppu21I YACGTR 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 294, 1628
PspCI CACGTG 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 548, 818
PspGI CCWGG 2 cut(s) 294, 1628
PspN4I GGNNCC 7 cut(s) 247, 570, 662, 1280, 1507, 1522, 1952
PspPI GGNCC 7 cut(s) 174, 220, 259, 569, 912, 1722, 1904
PstI CTGCAG 1 cut(s) 1473
PstNI CAGNNNCTG 1 cut(s) 1706
PsuI RGATCY 2 cut(s) 1651, 2080
PvuII CAGCTG 3 cut(s) 742, 1085, 1468
RsaI GTAC 5 cut(s) 848, 1244, 1686, 1705, 2327
RsaNI GTAC 5 cut(s) 847, 1243, 1685, 1704, 2326
RseI CAYNNNNRTG 4 cut(s) 624, 1112, 1233, 1335
SalI GTCGAC 1 cut(s) 1535
Sau3AI GATC 5 cut(s) 20, 144, 420, 1651, 2080
Sau96I GGNCC 7 cut(s) 174, 220, 259, 569, 912, 1722, 1904
SchI GAGTC 6 cut(s) 377, 527, 620, 863, 1112, 1645
ScrFI CCNGG 4 cut(s) 83, 296, 1224, 1630
SduI GDGCHC 3 cut(s) 657, 738, 1342
SexAI ACCWGGT 1 cut(s) 1628
SfaNI GCATC 7 cut(s) 369, 1123, 1225, 1378, 1435, 1927, 2046
SfcI CTRYAG 2 cut(s) 1469, 2284
SfiI GGCCNNNNNGGCC 1 cut(s) 893
SfoI GGCGCC 1 cut(s) 1952
SinI GGWCC 3 cut(s) 174, 259, 1722
SmiMI CAYNNNNRTG 4 cut(s) 624, 1112, 1233, 1335
SmlI CTYRAG 2 cut(s) 881, 1601
SmoI CTYRAG 2 cut(s) 881, 1601
SphI GCATGC 1 cut(s) 1166
SseBI AGGCCT 1 cut(s) 1094
SspDI GGCGCC 1 cut(s) 1950
SspMI CTAG 5 cut(s) 120, 558, 1305, 1374, 1886
StuI AGGCCT 1 cut(s) 1094
StyD4I CCNGG 4 cut(s) 81, 294, 1222, 1628
StyI CCWWGG 6 cut(s) 119, 318, 1095, 2041, 2068, 2191
TaaI ACNGT 3 cut(s) 263, 1534, 2016
TaiI ACGT 4 cut(s) 215, 236, 258, 440
TaqI TCGA 8 cut(s) 192, 270, 344, 429, 683, 699, 1191, 1536
TatI WGTACW 2 cut(s) 1242, 2325
TauI GCSGC 5 cut(s) 98, 395, 808, 890, 2220
TfiI GAWTC 5 cut(s) 463, 526, 904, 940, 2185
TscAI CASTG 5 cut(s) 914, 1537, 1600, 1695, 1906
TseFI GTSAC 2 cut(s) 263, 1528
TseI GCWGC 5 cut(s) 382, 1004, 1082, 1465, 1468
Tsp45I GTSAC 2 cut(s) 263, 1528
TspDTI ATGAA 5 cut(s) 178, 1102, 1130, 1977, 2378
TspGWI ACGGA 3 cut(s) 84, 258, 687
TspRI CASTG 5 cut(s) 914, 1537, 1600, 1695, 1906
Van91I CCANNNNNTGG 1 cut(s) 2231
VpaK11BI GGWCC 3 cut(s) 174, 259, 1722
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 1547, 1749
XbaI TCTAGA 1 cut(s) 557
XceI RCATGY 2 cut(s) 1166, 1873
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 1301, 1536
XmnI GAANNNNTTC 1 cut(s) 1749
XspI CTAG 5 cut(s) 120, 558, 1305, 1374, 1886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.