FvH4_2g40480

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015564
Physical Location & Seq
Reverse (-)
28813455 .. 28814806
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40480.t1

Sequence Viewer

Length: 951 bp
ATGTTATATAAAGCCCTCCAAACCAGCTACAAAGTTTTAGTCTCAAAAGGGAAAGGGGAGCTAACAATGGCCACCACTAGATTATTGCGCACGTTTAAGCCTATGACTATTCATTCCTCCTCTGCCTCTTCTTCTTCTTCATCTTCTTCACCTCCAACAACTGTTAGGTATCTGAACAAGGGATCAGAGAAAATACTTGGTACTGAGAACGAGCGAAAACAAGTTGCGGTTGTTAAGGCTTCAGGGGCTGGTTCTCAGACACTTGCCTCATCAAAACCACAAGTGAATCAGGGAGTTGTAGATTTGTCCACCTTGGTTACGAAGACCAATCGTTCTTTGCGCATTCTACTAAGAACGGCTCTCAAGCGAAAATCTATGCAGCAACAGGTCCAGATGTTCATTGAAAGGGGCATTATTGATTGTCGGTTCTTTACATTACTTGCTGTTGCTGGATCTTTACTTGGTTCAATATTGTGCTTTGTCGAGGGAGGTTTTATTGTTTTAGAGTCATATTTCCAGTATTTTCAAGCCTTGTCTCAGAAGACAGATCAAGGACATATTATGCATCTACTTATTGAAGCAATAGACATGTTCCTAGTAGGAACAGCCATGCTTGTATTCGGGGTTGGGATGTATGCCATGTTCATGGGATCAAAGGCCGTGAAAGATAAAGGACCGCGGTTCACTGAATCAAACTTGTTTGGGCTCTTCTACATGAAGGCAGCTCCAGCATGGGTTGGTATGAAATCAGTTTCGCAAGCAAAATCGAAAATTGGGCATGCGGTGGTGATGATACTTCAAGTGGGACTGTTGGAGAAGTTCAAGAGTATACCTCTTGTCACACCACTGGATCTTGCTTGCTTCGCCGGAGCTGTGCTTGTTTCCTCTGCTTGTATCTTCCTTCTCTCCAGACTTAATTATTCTGCTACCACTGCTGACTCATGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

317

Amino Acids

34.31

Weight (kDa)

9.83

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 138 - 274 7.2e-32 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 89, 341
AccI GTMKAC 1 cut(s) 829
AccII CGCG 1 cut(s) 679
AciI CCGC 4 cut(s) 227, 677, 679, 782
AclWI GGATC 4 cut(s) 190, 460, 658, 858
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 6 cut(s) 404, 468, 527, 578, 800, 823
AluBI AGCT 4 cut(s) 27, 61, 725, 872
AluI AGCT 4 cut(s) 27, 61, 725, 872
Alw26I GTCTC 2 cut(s) 46, 540
AlwI GGATC 4 cut(s) 190, 460, 658, 858
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 2 cut(s) 69, 657
ApeKI GCWGC 2 cut(s) 379, 722
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 2 cut(s) 90, 342
AspS9I GGNCC 2 cut(s) 388, 674
AsuHPI GGTGA 2 cut(s) 141, 799
AvaII GGWCC 2 cut(s) 388, 674
BalI TGGCCA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 708
BbsI GAAGAC 2 cut(s) 329, 548
BbvI GCAGC 2 cut(s) 391, 734
BceAI ACGGC 2 cut(s) 372, 644
BcoDI GTCTC 2 cut(s) 46, 540
BfaI CTAG 2 cut(s) 78, 596
BisI GCNGC 2 cut(s) 380, 723
BlsI GCNGC 2 cut(s) 381, 724
Bme18I GGWCC 2 cut(s) 388, 674
BmgT120I GGNCC 2 cut(s) 388, 674
BmsI GCATC 1 cut(s) 574
BoxI GACNNNNGTC 1 cut(s) 942
BpiI GAAGAC 2 cut(s) 329, 548
BplI GAGNNNNNCTC 2 cut(s) 817, 849
BpmI CTGGAG 2 cut(s) 711, 892
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 312, 677
Bse1I ACTGG 2 cut(s) 517, 852
BseDI CCNNGG 2 cut(s) 312, 677
BseGI GGATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 195, 269, 551
BseNI ACTGG 2 cut(s) 517, 852
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 391, 734
Bsh1236I CGCG 1 cut(s) 679
BshFI GGCC 2 cut(s) 71, 659
BsiSI CCGG 1 cut(s) 867
BslFI GGGAC 1 cut(s) 819
BsmAI GTCTC 2 cut(s) 46, 540
BsmFI GGGAC 1 cut(s) 819
BsmI GAATGC 1 cut(s) 342
BsnI GGCC 2 cut(s) 71, 659
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 5 cut(s) 182, 452, 547, 650, 850
BspACI CCGC 4 cut(s) 227, 677, 679, 782
BspANI GGCC 2 cut(s) 71, 659
BspCNI CTCAG 3 cut(s) 196, 268, 550
BspFNI CGCG 1 cut(s) 679
BspPI GGATC 4 cut(s) 190, 460, 658, 858
BspQI GCTCTTC 1 cut(s) 713
BsrI ACTGG 2 cut(s) 517, 852
BssECI CCNNGG 2 cut(s) 312, 677
BssMI GATC 5 cut(s) 182, 452, 547, 650, 850
BssNAI GTATAC 1 cut(s) 830
BssT1I CCWWGG 1 cut(s) 312
Bst1107I GTATAC 1 cut(s) 830
Bst4CI ACNGT 2 cut(s) 163, 810
Bst6I CTCTTC 2 cut(s) 133, 713
BstC8I GCNNGC 3 cut(s) 759, 780, 859
BstDEI CTNAG 4 cut(s) 204, 255, 350, 537
BstDSI CCRYGG 1 cut(s) 677
BstF5I GGATG 1 cut(s) 636
BstFNI CGCG 1 cut(s) 679
BstHHI GCGC 2 cut(s) 90, 342
BstKTI GATC 5 cut(s) 185, 455, 550, 653, 853
BstMAI GTCTC 2 cut(s) 46, 540
BstMBI GATC 5 cut(s) 182, 452, 547, 650, 850
BstMWI GCNNNNNNNGC 4 cut(s) 245, 728, 863, 932
BstNSI RCATGY 2 cut(s) 592, 782
BstPAI GACNNNNGTC 1 cut(s) 942
BstUI CGCG 1 cut(s) 679
BstV1I GCAGC 2 cut(s) 391, 734
BstV2I GAAGAC 2 cut(s) 329, 548
BstX2I RGATCY 2 cut(s) 452, 850
BstXI CCANNNNNNTGG 1 cut(s) 646
BstYI RGATCY 2 cut(s) 452, 850
BstZ17I GTATAC 1 cut(s) 830
BsuRI GGCC 2 cut(s) 71, 659
BtgI CCRYGG 1 cut(s) 677
BtsCI GGATG 1 cut(s) 636
BtsI GCAGTG 1 cut(s) 930
BtsIMutI CAGTG 3 cut(s) 684, 845, 930
Cac8I GCNNGC 3 cut(s) 759, 780, 859
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 2 cut(s) 90, 342
Cfr13I GGNCC 2 cut(s) 388, 674
Cfr42I CCGCGG 1 cut(s) 680
Csp6I GTAC 1 cut(s) 201
CviAII CATG 9 cut(s) 589, 610, 640, 646, 715, 732, 779, 942, 948
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 4 cut(s) 204, 255, 350, 537
DpnI GATC 5 cut(s) 184, 454, 549, 652, 852
DpnII GATC 5 cut(s) 182, 452, 547, 650, 850
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 133, 713
EarI CTCTTC 2 cut(s) 133, 713
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 388, 674
Eco57I CTGAAG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 9 cut(s) 592, 613, 643, 649, 718, 735, 782, 945, 951
FaqI GGGAC 1 cut(s) 819
FatI CATG 9 cut(s) 588, 609, 639, 645, 714, 731, 778, 941, 947
FblI GTMKAC 1 cut(s) 829
Fnu4HI GCNGC 2 cut(s) 380, 723
FokI GGATG 1 cut(s) 643
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 2 cut(s) 380, 723
FspBI CTAG 2 cut(s) 78, 596
FspI TGCGCA 2 cut(s) 89, 341
GlaI GCGC 2 cut(s) 89, 341
GluI GCNGC 2 cut(s) 380, 723
GsuI CTGGAG 2 cut(s) 711, 892
HaeIII GGCC 2 cut(s) 71, 659
HapII CCGG 1 cut(s) 867
HhaI GCGC 2 cut(s) 90, 342
Hin1II CATG 9 cut(s) 592, 613, 643, 649, 718, 735, 782, 945, 951
Hin6I GCGC 2 cut(s) 88, 340
HinP1I GCGC 2 cut(s) 88, 340
HinfI GANTC 4 cut(s) 286, 506, 689, 938
HpaII CCGG 1 cut(s) 867
HphI GGTGA 2 cut(s) 141, 799
Hpy166II GTNNAC 3 cut(s) 309, 684, 830
Hpy188I TCNGA 4 cut(s) 174, 187, 258, 540
Hpy188III TCNNGA 3 cut(s) 391, 823, 909
Hpy8I GTNNAC 3 cut(s) 309, 684, 830
HpyAV CCTTC 2 cut(s) 712, 911
HpyCH4III ACNGT 2 cut(s) 163, 810
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 379, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 728, 863, 932
HpyF3I CTNAG 4 cut(s) 204, 255, 350, 537
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 9 cut(s) 592, 613, 643, 649, 718, 735, 782, 945, 951
HspAI GCGC 2 cut(s) 88, 340
KspI CCGCGG 1 cut(s) 680
Kzo9I GATC 5 cut(s) 182, 452, 547, 650, 850
LguI GCTCTTC 1 cut(s) 713
LmnI GCTCC 3 cut(s) 58, 730, 869
Lsp1109I GCAGC 2 cut(s) 391, 734
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 78, 596
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 316, 838
MalI GATC 5 cut(s) 184, 454, 549, 652, 852
MboI GATC 5 cut(s) 182, 452, 547, 650, 850
MflI RGATCY 2 cut(s) 452, 850
MhlI GDGCHC 1 cut(s) 708
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 2 cut(s) 771, 916
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 2 cut(s) 515, 932
MmeI TCCRAC 2 cut(s) 179, 792
Mox20I TGGCCA 1 cut(s) 71
Mph1103I ATGCAT 1 cut(s) 567
MscI TGGCCA 1 cut(s) 71
MseI TTAA 3 cut(s) 96, 234, 915
MslI CAYNNNNRTG 2 cut(s) 644, 946
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 679
MspI CCGG 1 cut(s) 867
Mva1269I GAATGC 1 cut(s) 342
MvnI CGCG 1 cut(s) 679
MwoI GCNNNNNNNGC 4 cut(s) 245, 728, 863, 932
NdeII GATC 5 cut(s) 182, 452, 547, 650, 850
NlaIII CATG 9 cut(s) 592, 613, 643, 649, 718, 735, 782, 945, 951
NmuCI GTSAC 1 cut(s) 838
NsbI TGCGCA 2 cut(s) 89, 341
NsiI ATGCAT 1 cut(s) 567
NspI RCATGY 2 cut(s) 592, 782
PaeI GCATGC 1 cut(s) 782
PciI ACATGT 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 713
PctI GAATGC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 286, 689
PkrI GCNGC 2 cut(s) 381, 724
PleI GAGTC 2 cut(s) 514, 932
PpsI GAGTC 2 cut(s) 514, 932
PscI ACATGT 1 cut(s) 588
PshAI GACNNNNGTC 1 cut(s) 942
PspPI GGNCC 2 cut(s) 388, 674
PsrI GAACNNNNNNTAC 2 cut(s) 626, 658
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 2 cut(s) 452, 850
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 2 cut(s) 644, 946
SacII CCGCGG 1 cut(s) 680
SapI GCTCTTC 1 cut(s) 713
SaqAI TTAA 3 cut(s) 96, 234, 915
SatI GCNGC 2 cut(s) 380, 723
Sau3AI GATC 5 cut(s) 182, 452, 547, 650, 850
Sau96I GGNCC 2 cut(s) 388, 674
SchI GAGTC 2 cut(s) 515, 932
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 1 cut(s) 574
Sfr303I CCGCGG 1 cut(s) 680
SgrBI CCGCGG 1 cut(s) 680
SinI GGWCC 2 cut(s) 388, 674
SmiMI CAYNNNNRTG 2 cut(s) 644, 946
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 782
Sse9I AATT 2 cut(s) 771, 916
SsiI CCGC 4 cut(s) 227, 677, 679, 782
SspI AATATT 1 cut(s) 471
SspMI CTAG 2 cut(s) 78, 596
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 163, 810
TaiI ACGT 1 cut(s) 95
TaqI TCGA 2 cut(s) 483, 767
TasI AATT 2 cut(s) 771, 916
TfiI GAWTC 2 cut(s) 286, 689
Tru1I TTAA 3 cut(s) 96, 234, 915
Tru9I TTAA 3 cut(s) 96, 234, 915
TscAI CASTG 3 cut(s) 691, 852, 937
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 2 cut(s) 379, 722
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 6 cut(s) 101, 129, 388, 634, 731, 758
TspRI CASTG 3 cut(s) 691, 852, 937
VpaK11BI GGWCC 2 cut(s) 388, 674
XceI RCATGY 2 cut(s) 592, 782
XmiI GTMKAC 1 cut(s) 829
XspI CTAG 2 cut(s) 78, 596
Zsp2I ATGCAT 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.