Rh6DG407300

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015564
Physical Location & Seq
Forward (+)
59481386 .. 59486912
5527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG407300.1

Sequence Viewer

Length: 879 bp
ATGGCAACCACTAGAATATTGCGCACGTTTAAGCCTATGACTATTCATTCCTCCTCTGCTTCTTCTTCTTCACCACCAACAACTGTTAGGTATCTGAGCAAGGATGCCGGGTTGATGAGTGGAGAGAAAAAACTTGGTACTGCGAATGAGAGAAAACAAATGGCGGTTGTTAAGGCTTCAGTGGCCGGTTCCCAGACACTTACCACATCGAAGCCACAAGTGAATCGAGGAGTTATAGATTTGGCTTCCTTGGTTACAAAGACCAATCGTTCTTTGCTCATTCTACTAAGAACGGCTCTCAAGAGAAAATCTATACAGCAGCAGGTCCAGATGTTCATTGAAAGGGGCATAATTGACTGTCGGTTCTTTACATTACTTGCTGTTGCAGGATCTTTACTTGGTTCAGTATTGTGCTTTGTCGAGGGTTGTTTTATTGTTCTAGAGTCATATTTCCAGTATTTTCATGCCTTGTCCCAGAAGACAGATCAAGGACATATGGTGCACCTACTTATTGAAGCAATAGACATGTTCCTAGTAGGAACAGCCATGCTTATATTCGGAGTTGGGTTGTATGCCATGTTCATGGGGTCAAAGGCCGTGAAAGATAAAGGACTGCGGTTCACTGAGTCAAACTTGTTTGGGCTGTTCTACATGAAGGCAGCTCCAGCATGGGTTGACATGAAATCAGTTTCGCAAGCAAAATCTAAAATTGGGCATGCAGTGGTGATGATACTTCAAGTGGGACTGTTAGAGAAGTTCAAAAGTATACCTCTTGTTACACCACTCGATCTTGCTTGCTTTGCCGGAGCTGTGCTTGTCTCCTCAGCTTGTTTCTTCCTTCTTTCCAGACTTGATTATTCTGCTACCACTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

292

Amino Acids

31.79

Weight (kDa)

9.77

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 117 - 253 8.3e-33 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 766
AciI CCGC 2 cut(s) 164, 616
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 4 cut(s) 341, 515, 737, 760
AluBI AGCT 3 cut(s) 662, 809, 827
AluI AGCT 3 cut(s) 662, 809, 827
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 823
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 1 cut(s) 397
AoxI GGCC 2 cut(s) 183, 594
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 319, 659
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 63, 736
AvaII GGWCC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 2 cut(s) 331, 671
BceAI ACGGC 2 cut(s) 309, 581
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 823
BfaI CTAG 3 cut(s) 12, 440, 533
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 320, 660
BlsI GCNGC 2 cut(s) 321, 661
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 823
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 86, 615, 837
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 3 cut(s) 43, 243, 811
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 2 cut(s) 331, 671
BshFI GGCC 2 cut(s) 185, 596
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 3 cut(s) 108, 186, 804
BslFI GGGAC 2 cut(s) 457, 756
BsmAI GTCTC 1 cut(s) 823
BsmFI GGGAC 2 cut(s) 457, 756
BsnI GGCC 2 cut(s) 185, 596
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 3 cut(s) 389, 484, 787
BspACI CCGC 2 cut(s) 164, 616
BspANI GGCC 2 cut(s) 185, 596
BspCNI CTCAG 3 cut(s) 87, 616, 836
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 389, 484, 787
BssNAI GTATAC 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 767
Bst4CI ACNGT 3 cut(s) 85, 359, 747
BstC8I GCNNGC 4 cut(s) 696, 717, 796, 874
BstDEI CTNAG 4 cut(s) 95, 287, 624, 823
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 392, 487, 790
BstMAI GTCTC 1 cut(s) 823
BstMBI GATC 3 cut(s) 389, 484, 787
BstMWI GCNNNNNNNGC 4 cut(s) 182, 665, 800, 869
BstNSI RCATGY 2 cut(s) 529, 719
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 331, 671
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 389
BstZ17I GTATAC 1 cut(s) 767
BsuRI GGCC 2 cut(s) 185, 596
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 726, 867
BtsIMutI CAGTG 4 cut(s) 186, 621, 726, 867
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 696, 717, 796, 874
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 138
CviAII CATG 9 cut(s) 464, 526, 547, 577, 583, 652, 669, 679, 716
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 4 cut(s) 95, 287, 624, 823
DpnI GATC 3 cut(s) 391, 486, 789
DpnII GATC 3 cut(s) 389, 484, 787
EaeI YGGCCR 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 9 cut(s) 467, 529, 550, 580, 586, 655, 672, 682, 719
FaqI GGGAC 2 cut(s) 457, 756
FatI CATG 9 cut(s) 463, 525, 546, 576, 582, 651, 668, 678, 715
FauNDI CATATG 1 cut(s) 495
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 2 cut(s) 320, 660
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 320, 660
FspBI CTAG 3 cut(s) 12, 440, 533
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 320, 660
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 2 cut(s) 185, 596
HapII CCGG 3 cut(s) 108, 186, 804
HhaI GCGC 1 cut(s) 24
Hin1II CATG 9 cut(s) 467, 529, 550, 580, 586, 655, 672, 682, 719
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 3 cut(s) 223, 443, 626
HpaII CCGG 3 cut(s) 108, 186, 804
HphI GGTGA 2 cut(s) 63, 736
Hpy166II GTNNAC 4 cut(s) 502, 621, 676, 767
Hpy188I TCNGA 2 cut(s) 96, 560
Hpy188III TCNNGA 4 cut(s) 301, 328, 440, 846
Hpy8I GTNNAC 4 cut(s) 502, 621, 676, 767
HpyAV CCTTC 2 cut(s) 649, 848
HpyCH4III ACNGT 3 cut(s) 85, 359, 747
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 386, 502, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 665, 800, 869
HpyF3I CTNAG 4 cut(s) 95, 287, 624, 823
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 9 cut(s) 467, 529, 550, 580, 586, 655, 672, 682, 719
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 389, 484, 787
LmnI GCTCC 2 cut(s) 667, 806
Lsp1109I GCAGC 2 cut(s) 331, 671
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 12, 440, 533
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 253, 775
MalI GATC 3 cut(s) 391, 486, 789
MboI GATC 3 cut(s) 389, 484, 787
MboII GAAGA 5 cut(s) 54, 57, 60, 490, 826
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 2 cut(s) 351, 708
MlyI GAGTC 2 cut(s) 452, 635
MnlI CCTC 6 cut(s) 61, 64, 221, 415, 780, 832
MseI TTAA 2 cut(s) 30, 171
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 3 cut(s) 108, 186, 804
MspR9I CCNGG 1 cut(s) 109
MwoI GCNNNNNNNGC 4 cut(s) 182, 665, 800, 869
NciI CCSGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 495
NdeII GATC 3 cut(s) 389, 484, 787
NlaIII CATG 9 cut(s) 467, 529, 550, 580, 586, 655, 672, 682, 719
NlaIV GGNNCC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 2 cut(s) 529, 719
PaeI GCATGC 1 cut(s) 719
PciI ACATGT 1 cut(s) 525
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 321, 661
PleI GAGTC 2 cut(s) 451, 634
PpsI GAGTC 2 cut(s) 451, 634
PscI ACATGT 1 cut(s) 525
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 325
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 2 cut(s) 30, 171
SatI GCNGC 2 cut(s) 320, 660
Sau3AI GATC 3 cut(s) 389, 484, 787
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 2 cut(s) 452, 635
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 504
SetI ASST 8 cut(s) 29, 92, 327, 507, 664, 772, 811, 829
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 719
Sse9I AATT 2 cut(s) 351, 708
SsiI CCGC 2 cut(s) 164, 616
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 12, 440, 533
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 3 cut(s) 85, 359, 747
TaiI ACGT 1 cut(s) 29
TaqI TCGA 4 cut(s) 209, 226, 420, 786
TasI AATT 2 cut(s) 351, 708
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 30, 171
Tru9I TTAA 2 cut(s) 30, 171
TscAI CASTG 4 cut(s) 186, 628, 726, 874
TseI GCWGC 2 cut(s) 319, 659
TspDTI ATGAA 6 cut(s) 35, 325, 452, 571, 668, 695
TspRI CASTG 4 cut(s) 186, 628, 726, 874
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 325
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 2 cut(s) 529, 719
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 3 cut(s) 12, 440, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.