Rroxscaffold_7G00167960

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015564
Physical Location & Seq
Reverse (-)
8932351 .. 8939165
6815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167960.1

Sequence Viewer

Length: 897 bp
ATGGTAACCACTAGAATATTGCGCACGTTTAAGCCTATGACTATTCATTCCTCCTCTGCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCACCACCAACAACTGTTAGGTATCTGAGCAAGGATGCCGGGTTGATGAGTGGAGAGAAAAAACTTGGTACTGCGAATGAGAGAAAACAAATGGTGGTTGTTAAGGCTTCAGTGGCCGGTTCCCAGACACTTACCACATCGAAGCCACAAGTGAATCGAGGAGTTGTAGATTTGGCTTCCTTGGTTACAAAGACCAATCGTTCTTTGCTCATTCTACTAAGAACGGCTCTCAAGAGAAAATCTATACAGCAGCAGGTCCAGATGTTCATTGAAAGGGGCATAATTGACTGTCGGTTCTTTACATTACTTGCTGTTGCAGGATCTTTACTTGGTTCCGTATTGTGCTTTGTCGAGGGTTGTTTTATTGTTCTAGAGTCATATTTCCACTATTTTCATGCCTTGTCTCAGAAGACAGATCAAGGACATATGGTGCACCTACTTATTGAAGCAATAGACATGTTCCTAGTAGGAACAGCCATGCTTATATTCGGAGTTGGGTTGTATGCCATGTTCATGGGGTCAAAGGCTGCGAAAGATGGAGGACCGCGGTTCAGTGAGTCAAACTTGTTTGGGCTGTTCTACATGAAGGCAGCTCCAGCATGGGTTGACATGAAATCAGTTTCGCAAGCAAAATCTAAAATTGGGCATGCAGTGGTGATGATACTTCAAGTGGGACTGTTAGAGAAATTCAAAAGTATACCTCTTGTCACACCACTCGATCTTGCTTGCTTTGCCGGAGCTGTGCTTGTCTCCTCAGCTTGTATCTTCCTCCTTTCCAGACTTGATTATTCTGCTACCACTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

298

Amino Acids

32.2

Weight (kDa)

9.73

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 123 - 259 3.2e-33 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 784
AccII CGCG 1 cut(s) 634
AciI CCGC 2 cut(s) 632, 634
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 773
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 4 cut(s) 359, 533, 755, 778
AluBI AGCT 3 cut(s) 680, 827, 845
AluI AGCT 3 cut(s) 680, 827, 845
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 495, 841
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 1 cut(s) 415
AoxI GGCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 3 cut(s) 337, 614, 677
ApoI RAATTY 1 cut(s) 773
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 343, 629
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 81, 754
AvaII GGWCC 2 cut(s) 343, 629
BaeGI GKGCMC 1 cut(s) 522
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 841
BbvI GCAGC 3 cut(s) 349, 601, 689
BccI CCATC 1 cut(s) 617
BceAI ACGGC 1 cut(s) 327
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 495, 841
BfaI CTAG 3 cut(s) 12, 458, 551
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 3 cut(s) 338, 615, 678
BlsI GCNGC 3 cut(s) 339, 616, 679
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 343, 629
BmgT120I GGNCC 2 cut(s) 343, 629
BmiI GGNNCC 2 cut(s) 208, 421
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 841
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 267, 632
Bse118I RCCGGY 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 267, 632
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 3 cut(s) 104, 506, 855
BseRI GAGGAG 3 cut(s) 43, 261, 829
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 3 cut(s) 349, 601, 689
Bsh1236I CGCG 1 cut(s) 634
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 3 cut(s) 126, 204, 822
BslFI GGGAC 1 cut(s) 774
BsmAI GTCTC 2 cut(s) 495, 841
BsmFI GGGAC 1 cut(s) 774
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 3 cut(s) 407, 502, 805
BspACI CCGC 2 cut(s) 632, 634
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 3 cut(s) 105, 505, 854
BspFNI CGCG 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 208, 421
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 267, 632
BssMI GATC 3 cut(s) 407, 502, 805
BssNAI GTATAC 1 cut(s) 785
BssT1I CCWWGG 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 785
Bst4CI ACNGT 3 cut(s) 103, 377, 765
BstC8I GCNNGC 4 cut(s) 714, 735, 814, 892
BstDEI CTNAG 4 cut(s) 113, 305, 492, 841
BstDSI CCRYGG 1 cut(s) 632
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 634
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 410, 505, 808
BstMAI GTCTC 2 cut(s) 495, 841
BstMBI GATC 3 cut(s) 407, 502, 805
BstMWI GCNNNNNNNGC 4 cut(s) 200, 683, 818, 887
BstNSI RCATGY 2 cut(s) 547, 737
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 3 cut(s) 349, 601, 689
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 407
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 1 cut(s) 407
BstZ17I GTATAC 1 cut(s) 785
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 632
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 744, 885
BtsIMutI CAGTG 4 cut(s) 204, 646, 744, 885
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 4 cut(s) 714, 735, 814, 892
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 343, 629
Cfr42I CCGCGG 1 cut(s) 635
Csp6I GTAC 1 cut(s) 156
CviAII CATG 9 cut(s) 482, 544, 565, 595, 601, 670, 687, 697, 734
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 4 cut(s) 113, 305, 492, 841
DpnI GATC 3 cut(s) 409, 504, 807
DpnII GATC 3 cut(s) 407, 502, 805
EaeI YGGCCR 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 343, 629
Eco57I CTGAAG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 9 cut(s) 485, 547, 568, 598, 604, 673, 690, 700, 737
FaqI GGGAC 1 cut(s) 774
FatI CATG 9 cut(s) 481, 543, 564, 594, 600, 669, 686, 696, 733
FauNDI CATATG 1 cut(s) 513
FblI GTMKAC 1 cut(s) 784
Fnu4HI GCNGC 3 cut(s) 338, 615, 678
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 338, 615, 678
FspBI CTAG 3 cut(s) 12, 458, 551
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 3 cut(s) 338, 615, 678
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 1 cut(s) 203
HapII CCGG 3 cut(s) 126, 204, 822
HhaI GCGC 1 cut(s) 24
Hin1II CATG 9 cut(s) 485, 547, 568, 598, 604, 673, 690, 700, 737
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 3 cut(s) 241, 461, 644
HpaII CCGG 3 cut(s) 126, 204, 822
HphI GGTGA 2 cut(s) 81, 754
Hpy166II GTNNAC 3 cut(s) 520, 694, 785
Hpy188I TCNGA 3 cut(s) 114, 495, 578
Hpy188III TCNNGA 4 cut(s) 319, 346, 458, 864
Hpy8I GTNNAC 3 cut(s) 520, 694, 785
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 3 cut(s) 103, 377, 765
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 404, 520, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 683, 818, 887
HpyF3I CTNAG 4 cut(s) 113, 305, 492, 841
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 9 cut(s) 485, 547, 568, 598, 604, 673, 690, 700, 737
HspAI GCGC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 635
Kzo9I GATC 3 cut(s) 407, 502, 805
LmnI GCTCC 2 cut(s) 685, 824
Lsp1109I GCAGC 3 cut(s) 349, 601, 689
LweI GCATC 1 cut(s) 112
MaeI CTAG 3 cut(s) 12, 458, 551
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 4, 271, 793
MalI GATC 3 cut(s) 409, 504, 807
MboI GATC 3 cut(s) 407, 502, 805
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 3 cut(s) 369, 726, 773
MlyI GAGTC 2 cut(s) 470, 653
MnlI CCTC 8 cut(s) 61, 64, 239, 433, 620, 798, 850, 866
MseI TTAA 2 cut(s) 30, 189
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 3 cut(s) 126, 204, 822
MspR9I CCNGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 4 cut(s) 200, 683, 818, 887
NciI CCSGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 513
NdeII GATC 3 cut(s) 407, 502, 805
NlaIII CATG 9 cut(s) 485, 547, 568, 598, 604, 673, 690, 700, 737
NlaIV GGNNCC 2 cut(s) 208, 421
NmuCI GTSAC 1 cut(s) 793
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 2 cut(s) 547, 737
PaeI GCATGC 1 cut(s) 737
PciI ACATGT 1 cut(s) 543
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 3 cut(s) 339, 616, 679
PleI GAGTC 2 cut(s) 469, 652
PpsI GAGTC 2 cut(s) 469, 652
PscI ACATGT 1 cut(s) 543
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 208, 421
PspPI GGNCC 2 cut(s) 343, 629
PsrI GAACNNNNNNTAC 2 cut(s) 581, 613
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 599
SacII CCGCGG 1 cut(s) 635
SaqAI TTAA 2 cut(s) 30, 189
SatI GCNGC 3 cut(s) 338, 615, 678
Sau3AI GATC 3 cut(s) 407, 502, 805
Sau96I GGNCC 2 cut(s) 343, 629
SchI GAGTC 2 cut(s) 470, 653
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 522
SetI ASST 8 cut(s) 29, 110, 345, 525, 682, 790, 829, 847
SfaNI GCATC 1 cut(s) 112
Sfr303I CCGCGG 1 cut(s) 635
SgrBI CCGCGG 1 cut(s) 635
SinI GGWCC 2 cut(s) 343, 629
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 1 cut(s) 737
Sse9I AATT 3 cut(s) 369, 726, 773
SsiI CCGC 2 cut(s) 632, 634
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 12, 458, 551
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 103, 377, 765
TaiI ACGT 1 cut(s) 29
TaqI TCGA 4 cut(s) 227, 244, 438, 804
TasI AATT 3 cut(s) 369, 726, 773
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 30, 189
Tru9I TTAA 2 cut(s) 30, 189
TscAI CASTG 4 cut(s) 204, 646, 744, 892
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 3 cut(s) 337, 614, 677
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 7 cut(s) 35, 69, 343, 470, 589, 686, 713
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 4 cut(s) 204, 646, 744, 892
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 343, 629
XapI RAATTY 1 cut(s) 773
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 547, 737
XmiI GTMKAC 1 cut(s) 784
XspI CTAG 3 cut(s) 12, 458, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.