RLG00000011354

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015564
Physical Location & Seq
Reverse (-)
8819848 .. 8821155
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011354

Sequence Viewer

Length: 876 bp
ATGGCAACCACTAGAATATTGCGCACGTTTAAGCCTATGACTATTCATTCCTCCTCTGCTTCTTCTTCACCACCAACAACTGTTAGGTATCTGAGCAAGGATGCCGGGTTGATGAGTGGAGAGAAAAAACTTGGAACTGCGAATGAGAGAAAACAATTGGTGGCTGTTAAGGCTTCAGTGGCCGGTTCCCAGACACTTACCACATCGAAGCCACATGTGAATCGGGGAGTTATAGATTTGGCTTCCTTGTTTACAAAGACCAATCGTTCTTTGCTCATTCTACTAAGAACGGCTCTCAAGAGAAAATCTATACAGCAGCAGGTCCAGATGTTCATTGAAAGGGGCATAATTGACTGTCGATTCTTTACATTACTTGCTGTTGCAGGATCTTTACTTGGTTCAGTATTGTGCTTTGTCGAGGGTTGTTTTATTGTTCTAGAGTCATATTTCCAGTATTTTCATGCCTTGTCCCAGAAGACAGATCAAGGACATATGGTGCACCTACTTATTGAAGCAATAGACATGTTCCTAGTAGGAACAGCCATGCTTATATTCGGAGTTGGGTTGTATGCCATGTTCATGGGGTCAAAGGCCGTGAAAGATAAAGGACCGCGGTTCACTGAGTCAAACTTGTTTGGGCTGTTCTACATGAAGGCAGCTCCAGCATGGGTTGACATGAAATCAGTTTCGCAAGCAAAATCTAAAATTGGGCATGCAGTGGTGATGATACTTCAAGTGGGACTGTTAGAGAAGTTCAAAAGTATACCTCTTGTCACACCACTCGATCTTGCTTGCTTTGCCGGAGCTGTGCTTGTCTCCTCAGCTTGTATCTTCCTTCTTTCCAGACTTGATTATTCTGCTACCACTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

292

Amino Acids

31.69

Weight (kDa)

9.77

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 116 - 252 3.1e-33 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 763
AccII CGCG 1 cut(s) 613
AciI CCGC 2 cut(s) 611, 613
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 159
AflIII ACRYGT 2 cut(s) 214, 522
AgsI TTSAA 4 cut(s) 338, 512, 734, 757
AluBI AGCT 3 cut(s) 659, 806, 824
AluI AGCT 3 cut(s) 659, 806, 824
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 820
Alw44I GTGCAC 1 cut(s) 497
AlwI GGATC 1 cut(s) 394
AoxI GGCC 2 cut(s) 180, 591
ApaLI GTGCAC 1 cut(s) 497
ApeKI GCWGC 2 cut(s) 316, 656
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 322, 608
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 60, 733
AvaII GGWCC 2 cut(s) 322, 608
BaeGI GKGCMC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 820
BbvI GCAGC 2 cut(s) 328, 668
BceAI ACGGC 2 cut(s) 306, 578
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 820
BfaI CTAG 3 cut(s) 12, 437, 530
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 317, 657
BlsI GCNGC 2 cut(s) 318, 658
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 322, 608
BmgT120I GGNCC 2 cut(s) 322, 608
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 820
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 611
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 1 cut(s) 106
BseMII CTCAG 3 cut(s) 83, 612, 834
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 43, 808
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 2 cut(s) 328, 668
Bsh1236I CGCG 1 cut(s) 613
BshFI GGCC 2 cut(s) 182, 593
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 105, 183, 801
BslFI GGGAC 2 cut(s) 454, 753
BsmAI GTCTC 1 cut(s) 820
BsmFI GGGAC 2 cut(s) 454, 753
BsnI GGCC 2 cut(s) 182, 593
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 3 cut(s) 386, 481, 784
BspACI CCGC 2 cut(s) 611, 613
BspANI GGCC 2 cut(s) 182, 593
BspCNI CTCAG 3 cut(s) 84, 613, 833
BspFNI CGCG 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 3 cut(s) 386, 481, 784
BssNAI GTATAC 1 cut(s) 764
Bst1107I GTATAC 1 cut(s) 764
Bst4CI ACNGT 3 cut(s) 82, 356, 744
BstC8I GCNNGC 4 cut(s) 693, 714, 793, 871
BstDEI CTNAG 4 cut(s) 92, 284, 621, 820
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 613
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 389, 484, 787
BstMAI GTCTC 1 cut(s) 820
BstMBI GATC 3 cut(s) 386, 481, 784
BstMWI GCNNNNNNNGC 5 cut(s) 170, 179, 662, 797, 866
BstNSI RCATGY 3 cut(s) 218, 526, 716
BstSCI CCNGG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 501
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 2 cut(s) 328, 668
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 1 cut(s) 386
BstZ17I GTATAC 1 cut(s) 764
BsuRI GGCC 2 cut(s) 182, 593
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 2 cut(s) 723, 864
BtsIMutI CAGTG 4 cut(s) 183, 618, 723, 864
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 693, 714, 793, 871
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 322, 608
Cfr42I CCGCGG 1 cut(s) 614
DdeI CTNAG 4 cut(s) 92, 284, 621, 820
DpnI GATC 3 cut(s) 388, 483, 786
DpnII GATC 3 cut(s) 386, 481, 784
EaeI YGGCCR 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 322, 608
Eco57I CTGAAG 1 cut(s) 159
FaqI GGGAC 2 cut(s) 454, 753
FauNDI CATATG 1 cut(s) 492
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 2 cut(s) 317, 657
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 317, 657
FspBI CTAG 3 cut(s) 12, 437, 530
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 317, 657
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 2 cut(s) 182, 593
HapII CCGG 3 cut(s) 105, 183, 801
HhaI GCGC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 4 cut(s) 220, 360, 440, 623
HpaII CCGG 3 cut(s) 105, 183, 801
HphI GGTGA 2 cut(s) 60, 733
Hpy166II GTNNAC 5 cut(s) 252, 499, 618, 673, 764
Hpy188I TCNGA 2 cut(s) 93, 557
Hpy188III TCNNGA 4 cut(s) 298, 325, 437, 843
Hpy8I GTNNAC 5 cut(s) 252, 499, 618, 673, 764
HpyAV CCTTC 2 cut(s) 646, 845
HpyCH4III ACNGT 3 cut(s) 82, 356, 744
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 383, 499, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 179, 662, 797, 866
HpyF3I CTNAG 4 cut(s) 92, 284, 621, 820
HpySE526I ACGT 1 cut(s) 26
HspAI GCGC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 614
Kzo9I GATC 3 cut(s) 386, 481, 784
LmnI GCTCC 2 cut(s) 664, 803
Lsp1109I GCAGC 2 cut(s) 328, 668
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 12, 437, 530
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 772
MalI GATC 3 cut(s) 388, 483, 786
MboI GATC 3 cut(s) 386, 481, 784
MboII GAAGA 4 cut(s) 54, 57, 487, 823
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 3 cut(s) 155, 348, 705
MlyI GAGTC 2 cut(s) 449, 632
MnlI CCTC 5 cut(s) 61, 64, 412, 777, 829
MseI TTAA 2 cut(s) 30, 168
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 3 cut(s) 105, 183, 801
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 155
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 5 cut(s) 170, 179, 662, 797, 866
NciI CCSGG 1 cut(s) 106
NdeI CATATG 1 cut(s) 492
NdeII GATC 3 cut(s) 386, 481, 784
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 772
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 3 cut(s) 218, 526, 716
PaeI GCATGC 1 cut(s) 716
PciI ACATGT 2 cut(s) 214, 522
PfeI GAWTC 2 cut(s) 220, 360
PkrI GCNGC 2 cut(s) 318, 658
PleI GAGTC 2 cut(s) 448, 631
PpsI GAGTC 2 cut(s) 448, 631
PscI ACATGT 2 cut(s) 214, 522
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 322, 608
PsrI GAACNNNNNNTAC 2 cut(s) 560, 592
PsuI RGATCY 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 578
SacII CCGCGG 1 cut(s) 614
SaqAI TTAA 2 cut(s) 30, 168
SatI GCNGC 2 cut(s) 317, 657
Sau3AI GATC 3 cut(s) 386, 481, 784
Sau96I GGNCC 2 cut(s) 322, 608
SchI GAGTC 2 cut(s) 449, 632
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 501
SetI ASST 8 cut(s) 29, 89, 324, 504, 661, 769, 808, 826
SfaNI GCATC 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 614
SgrBI CCGCGG 1 cut(s) 614
SinI GGWCC 2 cut(s) 322, 608
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SphI GCATGC 1 cut(s) 716
Sse9I AATT 3 cut(s) 155, 348, 705
SsiI CCGC 2 cut(s) 611, 613
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 12, 437, 530
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 82, 356, 744
TaiI ACGT 1 cut(s) 29
TaqI TCGA 4 cut(s) 206, 358, 417, 783
TasI AATT 3 cut(s) 155, 348, 705
TfiI GAWTC 2 cut(s) 220, 360
Tru1I TTAA 2 cut(s) 30, 168
Tru9I TTAA 2 cut(s) 30, 168
TscAI CASTG 4 cut(s) 183, 625, 723, 871
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 2 cut(s) 316, 656
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 6 cut(s) 35, 322, 449, 568, 665, 692
TspRI CASTG 4 cut(s) 183, 625, 723, 871
VneI GTGCAC 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 322, 608
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 3 cut(s) 218, 526, 716
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 3 cut(s) 12, 437, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.