Rw6G035590

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015564
Physical Location & Seq
Forward (+)
60202017 .. 60203830
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035590.1

Sequence Viewer

Length: 687 bp
ATGGCAACCACTAGAATATTGCGCACGTTTAAGCCTATGACTATTCATTCCTCCTCTGCTTCTTCTTCTTCACCACCAATAACTGTTAGGTATCTGAGCAAGGATGCCGGGTTGATGAGTGGCGAGAAAAAACTTGGTACTGCGAATGAGAGAAAACAAATGGCGGTTGTTAAGGCTTCAGTGGCCGGTTCCCAGACACTTACCACATCGAAGCCACAAGTGAATCGAGGAGTTATAGATTTGGCTTCCTTGGTTACAAAGACCAATCGTTCTCTGCTCATTCTACTAAGAACGGCTCTCAAGAGAAAATCTATACAGCAGCAGGTCCAGATGTTCATTGAAAGGGGCATAATTGACTGTCGTTTCTTTACATTACTTGCTGTTGCAGGATCTTTACTTGGTTCAGTATTGTGCTTTGTCGAGGGTTGTTTTATTGTTCTAGAGTCATATTTCCAGTATTTTCATGCCTTGTCTCAGAAGACAGATCAAGGACATATGGTGCACCTACTTATTGAAGCAATAGACATGTTCCTAGTAGGAACAGCCATGCTTATATTCGGAGTTGGGTTGTATGCCATGTTCATGGGGTCAAAGGCTGCGAAAGATAGAGGACCGCAGTTCAGTGAGTCAAACTTGTTTGGGCTGTTCTACATGAAGGTACCACTCGATCACTTTCTGACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

228

Amino Acids

25.19

Weight (kDa)

9.77

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 117 - 201 2.2e-22 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 658
AciI CCGC 2 cut(s) 164, 614
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 139, 660
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 2 cut(s) 341, 515
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 477
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 1 cut(s) 397
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 319, 596
Asp718I GGTACC 1 cut(s) 658
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 325, 611
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 63
AvaII GGWCC 2 cut(s) 325, 611
BaeGI GKGCMC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 331, 583
BceAI ACGGC 1 cut(s) 309
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 477
BfaI CTAG 3 cut(s) 12, 440, 533
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 320, 597
BlsI GCNGC 2 cut(s) 321, 598
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 325, 611
BmgT120I GGNCC 2 cut(s) 325, 611
BmiI GGNNCC 2 cut(s) 190, 660
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 86, 488
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 2 cut(s) 43, 243
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 2 cut(s) 331, 583
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 108, 186
BsmAI GTCTC 1 cut(s) 477
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 3 cut(s) 389, 484, 667
BspACI CCGC 2 cut(s) 164, 614
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 87, 487
BspLI GGNNCC 2 cut(s) 190, 660
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 389, 484, 667
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 85, 359
BstDEI CTNAG 3 cut(s) 95, 287, 474
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 392, 487, 670
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 3 cut(s) 389, 484, 667
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 331, 583
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 186, 628
BveI ACCTGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 325, 611
Csp6I GTAC 2 cut(s) 138, 659
CviAII CATG 6 cut(s) 464, 526, 547, 577, 583, 652
CviJI RGCY 9 cut(s) 34, 176, 185, 214, 245, 296, 545, 596, 643
CviKI_1 RGCY 9 cut(s) 34, 176, 185, 214, 245, 296, 545, 596, 643
CviQI GTAC 2 cut(s) 138, 659
DdeI CTNAG 3 cut(s) 95, 287, 474
DpnI GATC 3 cut(s) 391, 486, 669
DpnII GATC 3 cut(s) 389, 484, 667
EaeI YGGCCR 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 325, 611
Eco57I CTGAAG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 6 cut(s) 467, 529, 550, 580, 586, 655
FatI CATG 6 cut(s) 463, 525, 546, 576, 582, 651
FauNDI CATATG 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 320, 597
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 320, 597
FspBI CTAG 3 cut(s) 12, 440, 533
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 320, 597
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 108, 186
HhaI GCGC 1 cut(s) 24
Hin1II CATG 6 cut(s) 467, 529, 550, 580, 586, 655
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 3 cut(s) 223, 443, 626
HpaII CCGG 2 cut(s) 108, 186
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 4 cut(s) 96, 477, 560, 678
Hpy188III TCNNGA 3 cut(s) 301, 328, 440
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 2 cut(s) 85, 359
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 386, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 95, 287, 474
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 6 cut(s) 467, 529, 550, 580, 586, 655
HspAI GCGC 1 cut(s) 22
KpnI GGTACC 1 cut(s) 662
Kzo9I GATC 3 cut(s) 389, 484, 667
LpnPI CCDG 7 cut(s) 121, 199, 206, 308, 341, 372, 467
Lsp1109I GCAGC 2 cut(s) 331, 583
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 12, 440, 533
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 391, 486, 669
MboI GATC 3 cut(s) 389, 484, 667
MboII GAAGA 4 cut(s) 54, 57, 60, 490
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 1 cut(s) 351
MlyI GAGTC 2 cut(s) 452, 635
MnlI CCTC 5 cut(s) 61, 64, 221, 415, 602
MseI TTAA 2 cut(s) 30, 171
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 2 cut(s) 108, 186
MspR9I CCNGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 495
NdeII GATC 3 cut(s) 389, 484, 667
NlaIII CATG 6 cut(s) 467, 529, 550, 580, 586, 655
NlaIV GGNNCC 2 cut(s) 190, 660
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 1 cut(s) 529
PciI ACATGT 1 cut(s) 525
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 321, 598
PleI GAGTC 2 cut(s) 451, 634
PpsI GAGTC 2 cut(s) 451, 634
PscI ACATGT 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 190, 660
PspPI GGNCC 2 cut(s) 325, 611
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 2 cut(s) 139, 660
RsaNI GTAC 2 cut(s) 138, 659
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 2 cut(s) 30, 171
SatI GCNGC 2 cut(s) 320, 597
Sau3AI GATC 3 cut(s) 389, 484, 667
Sau96I GGNCC 2 cut(s) 325, 611
SchI GAGTC 2 cut(s) 452, 635
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 504
SetI ASST 5 cut(s) 29, 92, 327, 507, 660
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 2 cut(s) 325, 611
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 351
SsiI CCGC 2 cut(s) 164, 614
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 12, 440, 533
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 85, 359
TaiI ACGT 1 cut(s) 29
TaqI TCGA 4 cut(s) 209, 226, 420, 666
TasI AATT 1 cut(s) 351
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 30, 171
Tru9I TTAA 2 cut(s) 30, 171
TscAI CASTG 2 cut(s) 186, 628
TseI GCWGC 2 cut(s) 319, 596
TspDTI ATGAA 5 cut(s) 35, 325, 452, 571, 668
TspRI CASTG 2 cut(s) 186, 628
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 325, 611
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 529
XspI CTAG 3 cut(s) 12, 440, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.