Prupe.1G385900_v2.0.a1

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015564
Physical Location & Seq
Reverse (-)
34594927 .. 34597370
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G385900.1

Sequence Viewer

Length: 909 bp
ATGGCAGCCACTAGACTATTGCGCACCTTTAAGCCTATGACTTTTCATTCTTCTTCTTCTTCTTCTTCTTTGCCGCCGAAGACGCTGCGGTGTTCGAGCAAGGCCGGAAGTTTAAGCGGAGAGAAGAGACTTGGTGGGAAGAATGATAATCATGAGAGAAAGCAAATGGTGGTTGTCAAGGCCTCAATGGCCACTTCAGACACAATGAGCATAACTTTGAAGCCACAAGTGAATCGGGGAAGGCTAGCAGAATTGGTTTCTCTGCTTACAAAGACTAACCGTGCTTTGCTCATTCTTTTGAGAACGGCCCTCAAGCCAAAACCTTCGAGACAGCAGGTCCAGATGTTCATTGAAAGGGGGATAATAGACTGTCGATTCTTTACATTACTTGCAGTTGCGGGATCCTTACTTGGCTCAGTTTTGTGCTTTGTAGAGGGTTGCTTTATTGTTCTAGAGTCATATTTCCAGTATTTCCATGCCTTGTCACACAAGACGGATCAAGGACATATGGTGCATCTACTTATTGAAGCCATTGACATGTTCCTGGTAGGAACCGCCATGCTTATTTTCGGGGTTGGGTTGTACGCCATGTTCGTGGGATCAAAGGCCGTGAAAGAAAAAGGACCGCGGTTTTCAGAGTCAAACTTGTTTGGTCTCTTCTATATGAAGGCACCTCCAGCATGGGTTGACATGAAATCGGTTTCGCAAGCAAAGTCGAAAATAGGGCATGCAGTGGTGATGATACTTCAAGTGGGTTTGTTGGACAAGTTCAAGAGTATACCTCTGGTTACTCCACTGGATCTCGCTTGCTTTGCTGGAGCTGTGCTTCTTTCCTCTGCTGGTATCTTCATCCTGGCCAGACTCTCCACCACCGCCGGCGCTGTTGCTGGTGTACAACATGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

303

Amino Acids

32.76

Weight (kDa)

9.99

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 778
AccII CGCG 1 cut(s) 628
AciI CCGC 8 cut(s) 74, 88, 117, 398, 555, 626, 628, 873
AclWI GGATC 5 cut(s) 396, 409, 504, 607, 807
AcoI YGGCCR 2 cut(s) 189, 855
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 2 cut(s) 584, 894
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 5 cut(s) 220, 353, 527, 749, 772
AhdI GACNNNNNGTC 1 cut(s) 335
AjnI CCWGG 2 cut(s) 543, 852
AluBI AGCT 1 cut(s) 821
AluI AGCT 1 cut(s) 821
Alw26I GTCTC 3 cut(s) 121, 322, 659
AlwI GGATC 5 cut(s) 396, 409, 504, 607, 807
AoxI GGCC 6 cut(s) 102, 180, 189, 306, 606, 855
ApeKI GCWGC 2 cut(s) 5, 85
AspLEI GCGC 2 cut(s) 24, 881
AspS9I GGNCC 3 cut(s) 307, 337, 623
AsuHPI GGTGA 1 cut(s) 748
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 2 cut(s) 337, 623
BalI TGGCCA 2 cut(s) 191, 857
BamHI GGATCC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 17, 72
BceAI ACGGC 2 cut(s) 321, 593
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 2 cut(s) 545, 854
BcoDI GTCTC 3 cut(s) 121, 322, 659
BfaI CTAG 3 cut(s) 12, 245, 452
BfoI RGCGCY 1 cut(s) 882
BfuAI ACCTGC 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 3 cut(s) 6, 74, 86
BlsI GCNGC 3 cut(s) 7, 75, 87
Bme1390I CCNGG 2 cut(s) 545, 854
Bme18I GGWCC 2 cut(s) 337, 623
BmeRI GACNNNNNGTC 1 cut(s) 335
BmgT120I GGNCC 3 cut(s) 307, 337, 623
BmiI GGNNCC 3 cut(s) 403, 553, 672
BmrFI CCNGG 2 cut(s) 545, 854
BmsI GCATC 1 cut(s) 523
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 766, 798
BpmI CTGGAG 2 cut(s) 660, 837
BpuEI CTTGAG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 1 cut(s) 626
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 2 cut(s) 466, 801
BseBI CCWGG 2 cut(s) 545, 854
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 1 cut(s) 849
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 466, 801
BseXI GCAGC 2 cut(s) 17, 72
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 6 cut(s) 104, 182, 191, 308, 608, 857
BshNI GGYRCC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 105, 876
BsmAI GTCTC 3 cut(s) 121, 322, 659
BsnI GGCC 6 cut(s) 104, 182, 191, 308, 608, 857
Bso31I GGTCTC 1 cut(s) 659
Bsp1407I TGTACA 1 cut(s) 892
Bsp143I GATC 4 cut(s) 401, 496, 599, 799
BspACI CCGC 8 cut(s) 74, 88, 117, 398, 555, 626, 628, 873
BspANI GGCC 6 cut(s) 104, 182, 191, 308, 608, 857
BspCNI CTCAG 1 cut(s) 428
BspFNI CGCG 1 cut(s) 628
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 403, 553, 672
BspMI ACCTGC 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 5 cut(s) 396, 409, 504, 607, 807
BspT107I GGYRCC 1 cut(s) 670
BspTNI GGTCTC 1 cut(s) 659
BsrFI RCCGGY 1 cut(s) 875
BsrGI TGTACA 1 cut(s) 892
BsrI ACTGG 2 cut(s) 466, 801
BssAI RCCGGY 1 cut(s) 875
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 4 cut(s) 401, 496, 599, 799
BssNAI GTATAC 1 cut(s) 779
Bst1107I GTATAC 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 545, 854
Bst4CI ACNGT 2 cut(s) 281, 371
Bst6I CTCTTC 2 cut(s) 119, 662
BstAUI TGTACA 1 cut(s) 892
BstC8I GCNNGC 5 cut(s) 246, 708, 729, 808, 877
BstDEI CTNAG 1 cut(s) 415
BstDSI CCRYGG 1 cut(s) 626
BstF5I GGATG 1 cut(s) 849
BstFNI CGCG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 882
BstHHI GCGC 2 cut(s) 24, 881
BstKTI GATC 4 cut(s) 404, 499, 602, 802
BstMAI GTCTC 3 cut(s) 121, 322, 659
BstMBI GATC 4 cut(s) 401, 496, 599, 799
BstMWI GCNNNNNNNGC 4 cut(s) 82, 188, 677, 812
BstNI CCWGG 2 cut(s) 545, 854
BstNSI RCATGY 2 cut(s) 541, 731
BstSCI CCNGG 2 cut(s) 543, 852
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 2 cut(s) 17, 72
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 401, 799
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 401, 799
BstZ17I GTATAC 1 cut(s) 779
BsuRI GGCC 6 cut(s) 104, 182, 191, 308, 608, 857
BtgI CCRYGG 1 cut(s) 626
BtsCI GGATG 1 cut(s) 849
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 2 cut(s) 738, 794
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 5 cut(s) 246, 708, 729, 808, 877
CciI TCATGA 1 cut(s) 151
CfoI GCGC 2 cut(s) 24, 881
Cfr10I RCCGGY 1 cut(s) 875
Cfr13I GGNCC 3 cut(s) 307, 337, 623
Cfr42I CCGCGG 1 cut(s) 629
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 583, 893
CviAII CATG 9 cut(s) 152, 476, 538, 559, 589, 681, 691, 728, 899
CviQI GTAC 2 cut(s) 583, 893
DdeI CTNAG 1 cut(s) 415
DpnI GATC 4 cut(s) 403, 498, 601, 801
DpnII GATC 4 cut(s) 401, 496, 599, 799
DriI GACNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 189, 855
Eam1104I CTCTTC 2 cut(s) 119, 662
Eam1105I GACNNNNNGTC 1 cut(s) 335
EarI CTCTTC 2 cut(s) 119, 662
Eco147I AGGCCT 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 337, 623
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 543, 852
FaeI CATG 9 cut(s) 155, 479, 541, 562, 592, 684, 694, 731, 902
FatI CATG 9 cut(s) 151, 475, 537, 558, 588, 680, 690, 727, 898
FauI CCCGC 1 cut(s) 391
FauNDI CATATG 1 cut(s) 507
FblI GTMKAC 1 cut(s) 778
Fnu4HI GCNGC 3 cut(s) 6, 74, 86
FokI GGATG 1 cut(s) 836
Fsp4HI GCNGC 3 cut(s) 6, 74, 86
FspBI CTAG 3 cut(s) 12, 245, 452
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 2 cut(s) 23, 880
GluI GCNGC 3 cut(s) 6, 74, 86
GsuI CTGGAG 2 cut(s) 660, 837
HaeII RGCGCY 1 cut(s) 882
HaeIII GGCC 6 cut(s) 104, 182, 191, 308, 608, 857
HapII CCGG 2 cut(s) 105, 876
HgaI GACGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 24, 881
Hin1II CATG 9 cut(s) 155, 479, 541, 562, 592, 684, 694, 731, 902
Hin6I GCGC 2 cut(s) 22, 879
HinP1I GCGC 2 cut(s) 22, 879
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 5 cut(s) 232, 375, 455, 638, 861
HpaII CCGG 2 cut(s) 105, 876
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 3 cut(s) 688, 779, 893
Hpy188I TCNGA 2 cut(s) 199, 637
Hpy188III TCNNGA 5 cut(s) 152, 327, 340, 452, 772
Hpy8I GTNNAC 3 cut(s) 688, 779, 893
HpyAV CCTTC 3 cut(s) 234, 333, 661
HpyCH4III ACNGT 2 cut(s) 281, 371
HpyCH4V TGCA 3 cut(s) 392, 514, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 188, 677, 812
HpyF3I CTNAG 1 cut(s) 415
Hsp92II CATG 9 cut(s) 155, 479, 541, 562, 592, 684, 694, 731, 902
HspAI GCGC 2 cut(s) 22, 879
KroI GCCGGC 1 cut(s) 875
KroNI GCCGGC 1 cut(s) 877
KspI CCGCGG 1 cut(s) 629
Kzo9I GATC 4 cut(s) 401, 496, 599, 799
LmnI GCTCC 1 cut(s) 818
Lsp1109I GCAGC 2 cut(s) 17, 72
LweI GCATC 1 cut(s) 523
MaeI CTAG 3 cut(s) 12, 245, 452
MaeIII GTNAC 2 cut(s) 483, 787
MalI GATC 4 cut(s) 403, 498, 601, 801
MboI GATC 4 cut(s) 401, 496, 599, 799
MflI RGATCY 2 cut(s) 401, 799
MlsI TGGCCA 2 cut(s) 191, 857
MluCI AATT 1 cut(s) 251
MluNI TGGCCA 2 cut(s) 191, 857
MlyI GAGTC 3 cut(s) 464, 647, 855
MmeI TCCRAC 1 cut(s) 741
MnlI CCTC 6 cut(s) 193, 320, 427, 684, 792, 844
Mox20I TGGCCA 2 cut(s) 191, 857
MreI CGCCGGCG 1 cut(s) 875
MroNI GCCGGC 1 cut(s) 875
MscI TGGCCA 2 cut(s) 191, 857
MseI TTAA 2 cut(s) 30, 113
MslI CAYNNNNRTG 2 cut(s) 536, 593
Msp20I TGGCCA 2 cut(s) 191, 857
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 2 cut(s) 105, 876
MspR9I CCNGG 2 cut(s) 545, 854
MvaI CCWGG 2 cut(s) 545, 854
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 4 cut(s) 82, 188, 677, 812
NaeI GCCGGC 1 cut(s) 877
NdeI CATATG 1 cut(s) 507
NdeII GATC 4 cut(s) 401, 496, 599, 799
NgoMIV GCCGGC 1 cut(s) 875
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 9 cut(s) 155, 479, 541, 562, 592, 684, 694, 731, 902
NlaIV GGNNCC 3 cut(s) 403, 553, 672
NmuCI GTSAC 1 cut(s) 483
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 2 cut(s) 541, 731
PaeI GCATGC 1 cut(s) 731
PagI TCATGA 1 cut(s) 151
PceI AGGCCT 1 cut(s) 182
PciI ACATGT 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PdiI GCCGGC 1 cut(s) 877
PfeI GAWTC 2 cut(s) 232, 375
PkrI GCNGC 3 cut(s) 7, 75, 87
PleI GAGTC 3 cut(s) 463, 646, 855
PpsI GAGTC 3 cut(s) 463, 646, 855
PscI ACATGT 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 543, 852
PspGI CCWGG 2 cut(s) 543, 852
PspN4I GGNNCC 3 cut(s) 403, 553, 672
PspPI GGNCC 3 cut(s) 307, 337, 623
PsrI GAACNNNNNNTAC 2 cut(s) 575, 607
PsuI RGATCY 2 cut(s) 401, 799
RsaI GTAC 2 cut(s) 584, 894
RsaNI GTAC 2 cut(s) 583, 893
RseI CAYNNNNRTG 2 cut(s) 536, 593
SacII CCGCGG 1 cut(s) 629
SaqAI TTAA 2 cut(s) 30, 113
SatI GCNGC 3 cut(s) 6, 74, 86
Sau3AI GATC 4 cut(s) 401, 496, 599, 799
Sau96I GGNCC 3 cut(s) 307, 337, 623
SchI GAGTC 3 cut(s) 464, 647, 855
ScrFI CCNGG 2 cut(s) 545, 854
SetI ASST 6 cut(s) 29, 325, 339, 676, 784, 823
SfaNI GCATC 1 cut(s) 523
SfiI GGCCNNNNNGGCC 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 629
SgrAI CRCCGGYG 1 cut(s) 875
SgrBI CCGCGG 1 cut(s) 629
SinI GGWCC 2 cut(s) 337, 623
SmiMI CAYNNNNRTG 2 cut(s) 536, 593
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SphI GCATGC 1 cut(s) 731
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 8 cut(s) 74, 88, 117, 398, 555, 626, 628, 873
SspMI CTAG 3 cut(s) 12, 245, 452
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 543, 852
TaaI ACNGT 2 cut(s) 281, 371
TaqI TCGA 4 cut(s) 95, 326, 373, 716
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 892
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 2 cut(s) 232, 375
Tru1I TTAA 2 cut(s) 30, 113
Tru9I TTAA 2 cut(s) 30, 113
TscAI CASTG 2 cut(s) 738, 801
TseFI GTSAC 1 cut(s) 483
TseI GCWGC 2 cut(s) 5, 85
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 5 cut(s) 35, 337, 680, 707, 838
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 2 cut(s) 738, 801
VpaK11BI GGWCC 2 cut(s) 337, 623
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 2 cut(s) 541, 731
XmiI GTMKAC 1 cut(s) 778
XspI CTAG 3 cut(s) 12, 245, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.