Rorug06G0294500

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000864
Physical Location & Seq
Forward (+)
44673867 .. 44680818
6952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0294500.1

Sequence Viewer

Length: 2730 bp
ATGGATGAGAGCGGCATGCGATTCAGTGAACCGAATTACCATGGTTGGTCTGTAGATGAGGATGACTTTTCAGATGAGTACGAAGAGTTATTCTCGGATGAGGAAGCTTCGCAGAGTGCAAATATGGATGAGAATCTGGATTGTCTACACTTCAATGGCAAGAAGTATGAAGATCTTAGATCCTCTGATATGATTGGTGTTGAGTTTAGCAGCATCAAGGCAGTGGACACATTCTATGCTTACTATTCACTTGCCATGGGCTTCAGTTTCCGAAAGGAAAAGTTGTGTCGAAATGCAGCACGAGTGGTGGTGAGAAGACAGTTAGTGTGTTCAAAGGAGGGTGAGAGGAAAAAAAGGGGCAAGCCTGATCCTAGTTTTGCATCAGAAATCATTTCATGCGCCCAAAATCTTAGTGAACCTCATGGGACAAAACCGGTCTGCAAGAGGAAGACAGTTAACCAGAAACCAATCGTGGAAGATGCTGATACAAGAAGTATGAAACGTTCTGGGAAGCAGTTTGGTGATGGTGAACATGAAAAAAAAAGGCAGCGCCCTCCACAAAGAAATATTACCAGAGGTAATTGTCAAGCCCGTATCACAGCACGCCGATGCAAGGAAAGTGGTGTCTTCCGTGTGGTCCAATTCATCACCGAACATAACCACGACCTTGCTACAACAGAGTTTGTTCCCTTCCTTCGATCCCACCGCAAGGTTCGGGACCATGACGTTGCTCAGGTAACAGCACTTAAGAAAGTCTCTGTTGGTACATGCCGGGCTTATGAGTTGTTGGTCCACCAAGCCGGGGGACATGAATTTGTTGGTTTCCTCATAAAAGATTTGTATAACAAGATGGACTCTGAAAGGAAGGAACTCATGGTTGATGGTGACGCCCAGTCTACAATTAGTTTCATGAATTTGAAAGCATCTAAAGAGGCGGAGTTTTTCTGTTTGTTCAGTGTTGATGCCGAAGGCCGGCTGGGTAATATGTTTTGGAGAGATACCAAGTCTCTAGCAGATTACAATAATTTTGGGGATGTTTTGATTATTGATAGCACCTACAAGACCAACATATACGGCAAACCATTAGCCGTCTTCGTTGGTGCAAATAACCACAGGGCGACAGTACTCTTTGGGTGTGCATTGTTGGCTGATGAGAGTGAGGACACCTACAATTGGGTGGTTACGGCCTTTTTGACTTCCATGAGGGGAAAAAAACCAATATCAGTCCTCACTGACGGGGACGAAGCATTGAGAAATGCAGTTGTGAATCTCATTCCGGAGGCCCGACATCGATTGTGTGCATGGCACATTGCTAAGAATGTTGTTAAAAATGTTAGGGATGCGGATGTCCAAAGGGACTTTTGCCACCTAATTTTTGCCGGACTCGGAGTTGATGAGTGGGAAAAGTCGTGGCATTACATGGTGACAATGAATGGGCTTCAAGACAACAAATGGGTTGCTGCAATGTACAACAAGAGGGAGAGGTGGGCAGAGGCTTTCTTTAGGAACCATTTCTTCGGTGGTATGTGTACCACTCAAAGATGCGAGGCAATGCACAGAAATTTAAAAGGTGGGGTTGGTCGTTACATGAGGTTGTGTGAAGTGTTGCCACGCATGGACAAGACAATTGAACGCATCAGGTTTAATGGGCTTAACGATGACTTCAAATCAATGAACTCGCACCCGGTTATTGGCAGCCACATGCGGTGTATTCAACAGCAGGTTAGTGCAAGGTTTACCCACGACGTATTCCTCCTCATAAAAGATCAAATTCTTTTTGAGTCAAAGTTTCTCGTTGCTGACCGTGTTTGTTATGAGAATCAAGGATCAACACTTCATCTTGTAACCCAATATGGTAAACCTGAAAGGACATGGCATGTGACACATTATCAAGGTAAGCCCAACCTTTCTTTCGTATGCTCATGTCACCTCTTTGAGTCGGATGGTATTCCTTGCTGCCACATCTTCACAGTCATGAAGACAATGAATATGACTACCCTTCCAGAATCTTTGGTTAATCAGAGGTGGATAAAACAGGCTTGTACCAAAAATACCAGCACCCTCAGTAGTGGAATAATGCCCGCCAAGGATTTGCAGCTTGCCCGTTATGGGCAAATGATGGGTGATTGTGCTCAAATCTGTCATTCAGCTTCATTCTCAGATGAGGCATATGAAGAAATCACTCACTGTCTTAGTCGACTAATGGTTAGGTCCAAAACATTCAAGAGATGCAAAGATAGTCAGCCACCAGAAACTGTTGATGGTCTACACCCTAATGTGATTAGGGATCCGAACGTGTGCAAAACCAAGGGCACACATTCCAGGCATTCCACCAGTGTTGAGGTTGAGAGGGATCAGCCAGGAGGGAGGGGTTGTGGATTTTGCAGCCGGCCAGGTCATAATGTACGCACTTGTGCACTGCTAGCTGCACAAAATGGGGGGGAAAAGGATGAACCTCGTCTCCAAAGAGCACGGAACACCTCCATTGATGCTAGCTTGCAGTCTATTCCGGGTTCCAACAGATACAAGGGTCCAGCTGGTTTCACAAACATTGGTCAGACTGATGAGGATGATGCTTTCCTCAATCAAACTAGCAGTCAACATATGTTGCATCATGTTGAAGAATCTAGGACGTTTGATTTTTTTACCGGTCACGACACCTTTTTGGCTTCCTTGACTGCTCCATCTGCAAATCTAAATGGTGGGAACACATTCGTGCAGCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

909

Amino Acids

103.17

Weight (kDa)

8.11

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 77 - 224 2.3e-10 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 317 - 429 4e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 346 - 440 3.6e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1711
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 4 cut(s) 145, 896, 2197, 2266
AccIII TCCGGA 1 cut(s) 1276
AciI CCGC 6 cut(s) 12, 706, 935, 1343, 1705, 2082
AclI AACGTT 1 cut(s) 502
AclWI GGATC 7 cut(s) 174, 362, 693, 1834, 2282, 2295, 2361
AcoI YGGCCR 1 cut(s) 2390
AcsI RAATTY 4 cut(s) 812, 913, 1561, 1770
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 7 cut(s) 80, 766, 1125, 1469, 1531, 2044, 2406
AfiI CCNNNNNNNGG 7 cut(s) 613, 709, 802, 972, 1173, 1691, 2109
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 2295
AgeI ACCGGT 2 cut(s) 433, 2648
AgsI TTSAA 9 cut(s) 154, 333, 919, 1442, 1631, 1666, 1715, 2224, 2621
AhdI GACNNNNNGTC 1 cut(s) 892
AjnI CCWGG 3 cut(s) 2321, 2359, 2392
AjuI GAANNNNNNNTTGG 2 cut(s) 1895, 1927
AleI CACNNNNGTG 1 cut(s) 2714
AloI GAACNNNNNNTCC 2 cut(s) 2445, 2477
AluBI AGCT 6 cut(s) 107, 2098, 2150, 2426, 2496, 2537
AluI AGCT 6 cut(s) 107, 2098, 2150, 2426, 2496, 2537
Alw21I GWGCWC 3 cut(s) 2134, 2419, 2473
Alw26I GTCTC 3 cut(s) 760, 1011, 2465
Alw44I GTGCAC 1 cut(s) 2415
AlwI GGATC 7 cut(s) 174, 362, 693, 1834, 2282, 2295, 2361
AlwNI CAGNNNCTG 1 cut(s) 2255
Aor13HI TCCGGA 1 cut(s) 1276
AoxI GGCC 4 cut(s) 970, 1185, 1281, 2390
ApaLI GTGCAC 1 cut(s) 2415
ApoI RAATTY 4 cut(s) 812, 913, 1561, 1770
ArsI GACNNNNNNTTYG 2 cut(s) 2581, 2613
AsiGI ACCGGT 2 cut(s) 433, 2648
Asp700I GAANNNNTTC 2 cut(s) 1511, 2711
AspLEI GCGC 2 cut(s) 401, 552
AspS9I GGNCC 6 cut(s) 637, 718, 790, 1282, 2211, 2531
AsuC2I CCSGG 4 cut(s) 773, 802, 1685, 2511
AsuHPI GGTGA 9 cut(s) 322, 353, 533, 539, 640, 896, 1435, 1919, 2135
AsuNHI GCTAGC 2 cut(s) 2422, 2492
AvaII GGWCC 5 cut(s) 637, 718, 790, 2211, 2531
BaeGI GKGCMC 2 cut(s) 2315, 2419
BaeI ACNNNNGTAYC 2 cut(s) 2515, 2548
BamHI GGATCC 1 cut(s) 2287
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 5 cut(s) 322, 455, 619, 1084, 1985
Bbv12I GWGCWC 3 cut(s) 2134, 2419, 2473
BbvI GCAGC 9 cut(s) 222, 308, 559, 1447, 1707, 1943, 2107, 2397, 2413
BccI CCATC 7 cut(s) 518, 844, 875, 1937, 2113, 2255, 2692
BceAI ACGGC 3 cut(s) 1073, 1090, 1200
BciT130I CCWGG 3 cut(s) 2323, 2361, 2394
BcnI CCSGG 4 cut(s) 773, 802, 1685, 2511
BcoDI GTCTC 3 cut(s) 760, 1011, 2465
BfaI CTAG 6 cut(s) 372, 1010, 2423, 2493, 2592, 2628
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 1711
BglII AGATCT 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 7 cut(s) 773, 802, 1685, 2323, 2361, 2394, 2511
Bme18I GGWCC 5 cut(s) 637, 718, 790, 2211, 2531
BmeRI GACNNNNNGTC 1 cut(s) 892
BmgT120I GGNCC 6 cut(s) 637, 718, 790, 1282, 2211, 2531
BmiI GGNNCC 5 cut(s) 719, 1508, 2289, 2515, 2532
BmrFI CCNGG 7 cut(s) 773, 802, 1685, 2323, 2361, 2394, 2511
BmrI ACTGGG 1 cut(s) 886
BmtI GCTAGC 2 cut(s) 2426, 2496
BmuI ACTGGG 1 cut(s) 886
BpiI GAAGAC 5 cut(s) 322, 455, 619, 1084, 1985
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 732
BpuMI CCSGG 4 cut(s) 773, 802, 1685, 2511
Bsa29I ATCGAT 1 cut(s) 1291
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 5 cut(s) 40, 255, 801, 2085, 2307
BsaWI WCCGGW 3 cut(s) 433, 1276, 2648
BsaXI ACNNNNNCTCC 4 cut(s) 2359, 2389, 2445, 2475
Bsc4I CCNNNNNNNGG 7 cut(s) 613, 709, 802, 972, 1173, 1691, 2109
Bse118I RCCGGY 4 cut(s) 433, 972, 2388, 2648
Bse1I ACTGG 2 cut(s) 892, 2334
Bse3DI GCAATG 3 cut(s) 1308, 1470, 1557
Bse8I GATNNNNATC 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 1276
BseBI CCWGG 3 cut(s) 2323, 2361, 2394
BseCI ATCGAT 1 cut(s) 1291
BseDI CCNNGG 5 cut(s) 40, 255, 801, 2085, 2307
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 7 cut(s) 613, 709, 802, 972, 1173, 1691, 2109
BseMI GCAATG 3 cut(s) 1308, 1470, 1557
BseMII CTCAG 3 cut(s) 746, 2077, 2172
BseNI ACTGG 2 cut(s) 892, 2334
BseRI GAGGAG 1 cut(s) 1745
BseSI GKGCMC 2 cut(s) 2315, 2419
BseXI GCAGC 9 cut(s) 222, 308, 559, 1447, 1707, 1943, 2107, 2397, 2413
BseYI CCCAGC 1 cut(s) 976
BsgI GTGCAG 1 cut(s) 2412
BshFI GGCC 4 cut(s) 972, 1187, 1283, 2392
BshTI ACCGGT 2 cut(s) 433, 2648
BshVI ATCGAT 1 cut(s) 1291
BsiHKAI GWGCWC 3 cut(s) 2134, 2419, 2473
BslFI GGGAC 5 cut(s) 439, 731, 819, 1253, 1370
BslI CCNNNNNNNGG 7 cut(s) 613, 709, 802, 972, 1173, 1691, 2109
BsmAI GTCTC 3 cut(s) 760, 1011, 2465
BsmBI CGTCTC 1 cut(s) 2465
BsmFI GGGAC 5 cut(s) 439, 731, 819, 1253, 1370
BsmI GAATGC 1 cut(s) 2326
BsnI GGCC 4 cut(s) 972, 1187, 1283, 2392
Bsp1286I GDGCHC 4 cut(s) 2134, 2315, 2419, 2473
Bsp13I TCCGGA 1 cut(s) 1276
Bsp1407I TGTACA 1 cut(s) 1467
Bsp143I GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
Bsp19I CCATGG 2 cut(s) 40, 255
BspACI CCGC 6 cut(s) 12, 706, 935, 1343, 1705, 2082
BspANI GGCC 4 cut(s) 972, 1187, 1283, 2392
BspCNI CTCAG 3 cut(s) 745, 2076, 2171
BspDI ATCGAT 1 cut(s) 1291
BspEI TCCGGA 1 cut(s) 1276
BspHI TCATGA 2 cut(s) 909, 1974
BspLI GGNNCC 5 cut(s) 719, 1508, 2289, 2515, 2532
BspMI ACCTGC 1 cut(s) 1711
BspOI GCTAGC 2 cut(s) 2426, 2496
BspPI GGATC 7 cut(s) 174, 362, 693, 1834, 2282, 2295, 2361
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 12
BsrDI GCAATG 3 cut(s) 1308, 1470, 1557
BsrFI RCCGGY 4 cut(s) 433, 972, 2388, 2648
BsrGI TGTACA 1 cut(s) 1467
BsrI ACTGG 2 cut(s) 892, 2334
BssAI RCCGGY 4 cut(s) 433, 972, 2388, 2648
BssECI CCNNGG 5 cut(s) 40, 255, 801, 2085, 2307
BssMI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
BssNI GRCGYC 1 cut(s) 888
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 4 cut(s) 40, 255, 2085, 2307
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 3 cut(s) 2323, 2361, 2394
Bst4CI ACNGT 7 cut(s) 321, 454, 1123, 1805, 1972, 2189, 2257
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 888
BstAFI CTTAAG 1 cut(s) 746
BstAUI TGTACA 1 cut(s) 1467
BstDEI CTNAG 7 cut(s) 176, 410, 732, 1314, 2063, 2158, 2192
BstDSI CCRYGG 2 cut(s) 40, 255
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 401, 552
BstKTI GATC 8 cut(s) 175, 182, 370, 701, 1768, 1829, 2290, 2356
BstMAI GTCTC 3 cut(s) 760, 1011, 2465
BstMBI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
BstMWI GCNNNNNNNGC 3 cut(s) 1145, 2423, 2687
BstNI CCWGG 3 cut(s) 2323, 2361, 2394
BstNSI RCATGY 4 cut(s) 19, 771, 1705, 1880
BstSCI CCNGG 7 cut(s) 771, 800, 1683, 2321, 2359, 2392, 2509
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 2315, 2419
BstV1I GCAGC 9 cut(s) 222, 308, 559, 1447, 1707, 1943, 2107, 2397, 2413
BstV2I GAAGAC 5 cut(s) 322, 455, 619, 1084, 1985
BstX2I RGATCY 3 cut(s) 172, 179, 2287
BstYI RGATCY 3 cut(s) 172, 179, 2287
Bsu15I ATCGAT 1 cut(s) 1291
BsuRI GGCC 4 cut(s) 972, 1187, 1283, 2392
BsuTUI ATCGAT 1 cut(s) 1291
BtgI CCRYGG 2 cut(s) 40, 255
BtsI GCAGTG 2 cut(s) 228, 2417
BtsIMutI CAGTG 7 cut(s) 31, 228, 961, 1230, 2185, 2341, 2417
BveI ACCTGC 1 cut(s) 1711
CaiI CAGNNNCTG 1 cut(s) 2255
CciI TCATGA 2 cut(s) 909, 1974
CfoI GCGC 2 cut(s) 401, 552
Cfr10I RCCGGY 4 cut(s) 433, 972, 2388, 2648
Cfr13I GGNCC 6 cut(s) 637, 718, 790, 1282, 2211, 2531
ClaI ATCGAT 1 cut(s) 1291
CseI GACGC 1 cut(s) 896
Csp6I GTAC 7 cut(s) 79, 765, 1124, 1468, 1530, 2043, 2405
CspAI ACCGGT 2 cut(s) 433, 2648
CspCI CAANNNNNGTGG 4 cut(s) 601, 636, 2320, 2355
CviQI GTAC 7 cut(s) 79, 765, 1124, 1468, 1530, 2043, 2405
DdeI CTNAG 7 cut(s) 176, 410, 732, 1314, 2063, 2158, 2192
DpnI GATC 8 cut(s) 174, 181, 369, 700, 1767, 1828, 2289, 2355
DpnII GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
DraI TTTAAA 1 cut(s) 1566
DriI GACNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 2390
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 892
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 1 cut(s) 950
Eco130I CCWWGG 4 cut(s) 40, 255, 2085, 2307
Eco47I GGWCC 5 cut(s) 637, 718, 790, 2211, 2531
Eco57I CTGAAG 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 2321, 2359, 2392
EcoT14I CCWWGG 4 cut(s) 40, 255, 2085, 2307
ErhI CCWWGG 4 cut(s) 40, 255, 2085, 2307
Esp3I CGTCTC 1 cut(s) 2465
FaqI GGGAC 5 cut(s) 439, 731, 819, 1253, 1370
FauI CCCGC 1 cut(s) 2089
FauNDI CATATG 2 cut(s) 2170, 2604
FblI GTMKAC 4 cut(s) 145, 896, 2197, 2266
FspBI CTAG 6 cut(s) 372, 1010, 2423, 2493, 2592, 2628
GlaI GCGC 2 cut(s) 400, 551
GsaI CCCAGC 1 cut(s) 980
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 4 cut(s) 972, 1187, 1283, 2392
HgaI GACGC 1 cut(s) 896
HhaI GCGC 2 cut(s) 401, 552
Hin1I GRCGYC 1 cut(s) 888
Hin6I GCGC 2 cut(s) 399, 550
HinP1I GCGC 2 cut(s) 399, 550
HincII GTYRAC 3 cut(s) 457, 2198, 2600
HindII GTYRAC 3 cut(s) 457, 2198, 2600
HindIII AAGCTT 1 cut(s) 105
HpaI GTTAAC 1 cut(s) 457
HphI GGTGA 9 cut(s) 322, 353, 533, 539, 640, 896, 1435, 1919, 2135
Hpy188III TCNNGA 9 cut(s) 137, 716, 910, 1277, 1442, 1975, 2003, 2224, 2654
Hpy99I CGWCG 1 cut(s) 1748
HpyAV CCTTC 5 cut(s) 700, 704, 859, 962, 2009
HpyCH4III ACNGT 7 cut(s) 321, 454, 1123, 1805, 1972, 2189, 2257
HpyCH4IV ACGT 5 cut(s) 502, 726, 1746, 2295, 2633
HpyF10VI GCNNNNNNNGC 3 cut(s) 1145, 2423, 2687
HpyF3I CTNAG 7 cut(s) 176, 410, 732, 1314, 2063, 2158, 2192
HpySE526I ACGT 5 cut(s) 502, 726, 1746, 2295, 2633
Hsp92I GRCGYC 1 cut(s) 888
HspAI GCGC 2 cut(s) 399, 550
Kpn2I TCCGGA 1 cut(s) 1276
KroI GCCGGC 2 cut(s) 972, 2388
KroNI GCCGGC 2 cut(s) 974, 2390
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
LmnI GCTCC 1 cut(s) 2686
Lsp1109I GCAGC 9 cut(s) 222, 308, 559, 1447, 1707, 1943, 2107, 2397, 2413
MaeI CTAG 6 cut(s) 372, 1010, 2423, 2493, 2592, 2628
MaeII ACGT 5 cut(s) 502, 726, 1746, 2295, 2633
MaeIII GTNAC 9 cut(s) 736, 884, 1180, 1423, 1583, 1843, 1879, 1925, 2651
MalI GATC 8 cut(s) 174, 181, 369, 700, 1767, 1828, 2289, 2355
MbiI CCGCTC 1 cut(s) 12
MboI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
MfeI CAATTG 2 cut(s) 1171, 1626
MflI RGATCY 3 cut(s) 172, 179, 2287
MhlI GDGCHC 4 cut(s) 2134, 2315, 2419, 2473
MlyI GAGTC 4 cut(s) 848, 1377, 1790, 1946
MmeI TCCRAC 2 cut(s) 1920, 2541
MroI TCCGGA 1 cut(s) 1276
MroNI GCCGGC 2 cut(s) 972, 2388
MroXI GAANNNNTTC 2 cut(s) 1511, 2711
MseI TTAA 7 cut(s) 456, 747, 1326, 1565, 1644, 1653, 2016
MslI CAYNNNNRTG 5 cut(s) 153, 607, 1973, 2274, 2714
MspA1I CMGCKG 1 cut(s) 2537
MspCI CTTAAG 1 cut(s) 746
MspR9I CCNGG 7 cut(s) 773, 802, 1685, 2323, 2361, 2394, 2511
MunI CAATTG 2 cut(s) 1171, 1626
Mva1269I GAATGC 1 cut(s) 2326
MvaI CCWGG 3 cut(s) 2323, 2361, 2394
MwoI GCNNNNNNNGC 3 cut(s) 1145, 2423, 2687
NaeI GCCGGC 2 cut(s) 974, 2390
NciI CCSGG 4 cut(s) 773, 802, 1685, 2511
NcoI CCATGG 2 cut(s) 40, 255
NdeI CATATG 2 cut(s) 2170, 2604
NdeII GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
NgoMIV GCCGGC 2 cut(s) 972, 2388
NheI GCTAGC 2 cut(s) 2422, 2492
NlaIV GGNNCC 5 cut(s) 719, 1508, 2289, 2515, 2532
NmuCI GTSAC 5 cut(s) 884, 1423, 1879, 1925, 2651
NspI RCATGY 4 cut(s) 19, 771, 1705, 1880
OliI CACNNNNGTG 1 cut(s) 2714
PaeI GCATGC 1 cut(s) 19
PagI TCATGA 2 cut(s) 909, 1974
PctI GAATGC 1 cut(s) 2326
PdiI GCCGGC 2 cut(s) 974, 2390
PdmI GAANNNNTTC 2 cut(s) 1511, 2711
PfeI GAWTC 6 cut(s) 21, 133, 1267, 1819, 2006, 2624
PinAI ACCGGT 2 cut(s) 433, 2648
PleI GAGTC 4 cut(s) 848, 1377, 1789, 1945
PpsI GAGTC 4 cut(s) 848, 1377, 1789, 1945
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 2321, 2359, 2392
PspFI CCCAGC 1 cut(s) 976
PspGI CCWGG 3 cut(s) 2321, 2359, 2392
PspN4I GGNNCC 5 cut(s) 719, 1508, 2289, 2515, 2532
PspPI GGNCC 6 cut(s) 637, 718, 790, 1282, 2211, 2531
PsrI GAACNNNNNNTAC 2 cut(s) 487, 519
PstNI CAGNNNCTG 1 cut(s) 2255
PsuI RGATCY 3 cut(s) 172, 179, 2287
PvuII CAGCTG 1 cut(s) 2537
RsaI GTAC 7 cut(s) 80, 766, 1125, 1469, 1531, 2044, 2406
RsaNI GTAC 7 cut(s) 79, 765, 1124, 1468, 1530, 2043, 2405
RseI CAYNNNNRTG 5 cut(s) 153, 607, 1973, 2274, 2714
SalI GTCGAC 1 cut(s) 2196
SaqAI TTAA 7 cut(s) 456, 747, 1326, 1565, 1644, 1653, 2016
Sau3AI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
Sau96I GGNCC 6 cut(s) 637, 718, 790, 1282, 2211, 2531
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 4 cut(s) 848, 1377, 1790, 1946
ScrFI CCNGG 7 cut(s) 773, 802, 1685, 2323, 2361, 2394, 2511
SduI GDGCHC 4 cut(s) 2134, 2315, 2419, 2473
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 5 cut(s) 637, 718, 790, 2211, 2531
SmiMI CAYNNNNRTG 5 cut(s) 153, 607, 1973, 2274, 2714
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SphI GCATGC 1 cut(s) 19
SsiI CCGC 6 cut(s) 12, 706, 935, 1343, 1705, 2082
SspI AATATT 1 cut(s) 568
SspMI CTAG 6 cut(s) 372, 1010, 2423, 2493, 2592, 2628
StyD4I CCNGG 7 cut(s) 771, 800, 1683, 2321, 2359, 2392, 2509
StyI CCWWGG 4 cut(s) 40, 255, 2085, 2307
TaaI ACNGT 7 cut(s) 321, 454, 1123, 1805, 1972, 2189, 2257
TaiI ACGT 5 cut(s) 505, 729, 1749, 2298, 2636
TaqI TCGA 4 cut(s) 289, 697, 1291, 2197
TatI WGTACW 2 cut(s) 1123, 1467
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 6 cut(s) 21, 133, 1267, 1819, 2006, 2624
Tru1I TTAA 7 cut(s) 456, 747, 1326, 1565, 1644, 1653, 2016
Tru9I TTAA 7 cut(s) 456, 747, 1326, 1565, 1644, 1653, 2016
TscAI CASTG 7 cut(s) 31, 228, 961, 1237, 2192, 2341, 2424
TseFI GTSAC 5 cut(s) 884, 1423, 1879, 1925, 2651
Tsp45I GTSAC 5 cut(s) 884, 1423, 1879, 1925, 2651
TspGWI ACGGA 2 cut(s) 620, 2488
TspRI CASTG 7 cut(s) 31, 228, 961, 1237, 2192, 2341, 2424
Vha464I CTTAAG 1 cut(s) 746
VneI GTGCAC 1 cut(s) 2415
VpaK11BI GGWCC 5 cut(s) 637, 718, 790, 2211, 2531
XapI RAATTY 4 cut(s) 812, 913, 1561, 1770
XceI RCATGY 4 cut(s) 19, 771, 1705, 1880
XcmI CCANNNNNNNNNTGG 1 cut(s) 1517
XmiI GTMKAC 4 cut(s) 145, 896, 2197, 2266
XmnI GAANNNNTTC 2 cut(s) 1511, 2711
XspI CTAG 6 cut(s) 372, 1010, 2423, 2493, 2592, 2628
ZrmI AGTACT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.