Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Reverse (-)

61164037 .. 61164537

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGAACGAGGACGACTATAGAACCGCAGATAGTGGCGATGAAGAATCACTGAGCTACAGCGCGGGTGACGATGACTATCTTCCAGAAGATGAACAAGTCGATGACTTTGGTGAGGGTCGATGTCCACAGGAAAATTATATTCTTCTAAAAGAGGAAGAAATTGCCAAACTTCAGCAGGATTGTATTTCAGAAGTGTCTACCGTCCTTTCCATATCCAAATCTAATGCATGCTTACTACTCCCTCACTTTCATTGGAGTGTTGAGGATCTACAGGATGAATGGTTTTCTGATGAAGATAAAGTCCGAGACAAGGCAGGCTTGTTGAAGAAACCAATAGTCGAACATAATGCTAGCCAAAATCTAACAACTACTTGCGAAATATGCTTCGAGGAGTACTACTATTCATTAAATGCATCATCTAGGAGTAATAGTATTCTCACGAGACAAGTTATGGTACTTGTGGGTATCTCATACACTCATTTACAACTATTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

166

Amino Acids

19.02

Weight (kDa)

4.21

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARIH2_N	PF26000	53 - 93	8e-07	E3 ubiquitin-protein ligase ARIH2, N-terminal UBA domain
UBA_ARI1	PF21235	58 - 96	3.4e-13	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	27, 65
AclWI	GGATC	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	2 cut(s)	398, 459
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	328, 497
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	303, 439
AlwI	GGATC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	80, 125
AsuNHI	GCTAGC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BcoDI	GTCTC	2 cut(s)	303, 439
BfaI	CTAG	2 cut(s)	354, 423
BfmI	CTRYAG	3 cut(s)	19, 58, 272
BmcAI	AGTACT	1 cut(s)	398
BmsI	GCATC	1 cut(s)	425
BmtI	GCTAGC	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	78
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	303, 439
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	27, 65
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	65
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	276
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	3 cut(s)	232, 319, 355
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	303, 439
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	234
BstSFI	CTRYAG	3 cut(s)	19, 58, 272
BstUI	CGCG	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	232, 319, 355
CfoI	GCGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	397, 458
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	3 cut(s)	57, 321, 357
CviKI_1	RGCY	3 cut(s)	57, 321, 357
CviQI	GTAC	2 cut(s)	397, 458
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	158
EcoT22I	ATGCAT	2 cut(s)	232, 418
FaeI	CATG	1 cut(s)	234
FaiI	YATR	8 cut(s)	21, 141, 215, 232, 348, 385, 455, 475
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	1 cut(s)	230
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	200
FokI	GGATG	1 cut(s)	290
FspBI	CTAG	2 cut(s)	354, 423
GlaI	GCGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	2 cut(s)	80, 125
Hpy166II	GTNNAC	2 cut(s)	128, 201
Hpy188I	TCNGA	3 cut(s)	193, 292, 308
Hpy188III	TCNNGA	2 cut(s)	86, 442
Hpy8I	GTNNAC	2 cut(s)	128, 201
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	230, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	234
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	99, 116, 164, 260, 303
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	2 cut(s)	354, 423
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	56, 74, 101, 137, 170, 308, 340
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	2 cut(s)	136, 162
MnlI	CCTC	6 cut(s)	4, 109, 148, 255, 259, 385
Mph1103I	ATGCAT	2 cut(s)	232, 418
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	2 cut(s)	232, 418
NspI	RCATGY	1 cut(s)	234
PaeI	GCATGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	398, 459
RsaNI	GTAC	2 cut(s)	397, 458
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	410
Sau3AI	GATC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	398
SetI	ASST	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	3 cut(s)	19, 58, 272
SmiMI	CAYNNNNRTG	1 cut(s)	258
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	2 cut(s)	136, 162
SsiI	CCGC	2 cut(s)	27, 65
SspMI	CTAG	2 cut(s)	354, 423
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	4 cut(s)	102, 121, 342, 390
TasI	AATT	2 cut(s)	136, 162
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	6 cut(s)	57, 108, 242, 294, 309, 396
TspRI	CASTG	1 cut(s)	57
XceI	RCATGY	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	2 cut(s)	354, 423
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	2 cut(s)	232, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.