Rh6BG414700

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000864
Physical Location & Seq
Reverse (-)
64027880 .. 64028461
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG414700.1

Sequence Viewer

Length: 582 bp
ATGGGGTCATGTGATGTCTCTTGTCTTTGTTCACATAGTTATTGCTGGAATTGCACCGAGGAGAATCATAGTCCGGTGGACTGCGAGACGGTGGCGAAGTGGATTTTGAAGAACAAGGATGATTCTCAAAATGCACATTGGATACTGGTTCATTCCAAGCCTTGTCCAAGGTGCAAAAAACCAATTGAGAAGAACCAAGGCTGTAATCACATGAGGTGCAGATGTGGGCAGCAGTTCTGCTGGTCATGCCTCGGGCCTTTGTATGGAGGCTGCAATTGCAATAAATACAGGTCATCTGGGACAGGGATGAGTGCTGTCGAGAGCCAAAAGAAGAAGGCTAAGATGTATTTAGAGAGATACCTTCATTATTTTGAACGCTGGGACAACAATGGAAAATCAAAGCAAAAGGCTCTTGAGGATTTTGATAAGGTGAAGAATGTGCACATACATGAACTTGGAAAGATACAGGGAAATACAAAAGAGCATGAATACAATTTCATCATAGAGGCCTGGCAGCAGATAATTGAATGCAGGCAGGTACTGCGATGGACCTATGCTTATGGCTACTACATGCATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RanBP

Protein Analysis

193

Amino Acids

22.69

Weight (kDa)

8.53

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR_2 PF22605 48 - 86 6.6e-07 IBR domain
IBR_1 PF22191 52 - 88 2.5e-08 IBR domain
IBR PF01485 53 - 93 4.8e-07 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 3 cut(s) 109, 374, 527
AjnI CCWGG 1 cut(s) 509
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 2 cut(s) 22, 80
Alw44I GTGCAC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 2 cut(s) 254, 507
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 229, 270, 514
AspS9I GGNCC 2 cut(s) 254, 549
AsuHPI GGTGA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 241, 257, 526
BccI CCATC 1 cut(s) 540
BciT130I CCWGG 1 cut(s) 511
BciVI GTATCC 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 22, 80
BfuAI ACCTGC 1 cut(s) 526
BfuI GTATCC 1 cut(s) 135
BisI GCNGC 3 cut(s) 230, 271, 515
BlsI GCNGC 3 cut(s) 231, 272, 516
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 254, 549
BmrFI CCNGG 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 57, 167, 196, 250
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 4 cut(s) 57, 167, 196, 250
BseGI GGATG 2 cut(s) 124, 312
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 3 cut(s) 241, 257, 526
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 2 cut(s) 256, 509
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 2 cut(s) 313, 395
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 22, 80
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 2 cut(s) 313, 395
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 2 cut(s) 256, 509
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 444
BspANI GGCC 2 cut(s) 256, 509
BspMI ACCTGC 1 cut(s) 526
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 57, 167, 196, 250
BssT1I CCWWGG 2 cut(s) 167, 196
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 124, 312
BstMAI GTCTC 2 cut(s) 22, 80
BstMWI GCNNNNNNNGC 4 cut(s) 51, 246, 276, 541
BstNI CCWGG 1 cut(s) 511
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 509
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 3 cut(s) 241, 257, 526
BsuI GTATCC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 256, 509
BtgZI GCGATG 1 cut(s) 559
BtsCI GGATG 2 cut(s) 124, 312
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 533
CaiI CAGNNNCTG 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 254, 549
Csp6I GTAC 1 cut(s) 539
CviAII CATG 7 cut(s) 9, 211, 246, 449, 485, 571, 575
CviJI RGCY 9 cut(s) 160, 201, 256, 270, 324, 338, 410, 509, 564
CviKI_1 RGCY 9 cut(s) 160, 201, 256, 270, 324, 338, 410, 509, 564
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 167, 196
Eco147I AGGCCT 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 167, 196
EcoT22I ATGCAT 1 cut(s) 576
ErhI CCWWGG 2 cut(s) 167, 196
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 7 cut(s) 12, 214, 249, 452, 488, 574, 578
FaqI GGGAC 2 cut(s) 313, 395
FatI CATG 7 cut(s) 8, 210, 245, 448, 484, 570, 574
Fnu4HI GCNGC 3 cut(s) 230, 271, 515
FokI GGATG 2 cut(s) 131, 319
Fsp4HI GCNGC 3 cut(s) 230, 271, 515
GluI GCNGC 3 cut(s) 230, 271, 515
GsaI CCCAGC 1 cut(s) 382
HaeIII GGCC 2 cut(s) 256, 509
HapII CCGG 1 cut(s) 74
Hin1II CATG 7 cut(s) 12, 214, 249, 452, 488, 574, 578
HinfI GANTC 2 cut(s) 64, 122
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 3 cut(s) 32, 79, 442
Hpy188III TCNNGA 2 cut(s) 319, 413
Hpy8I GTNNAC 3 cut(s) 32, 79, 442
HpyAV CCTTC 2 cut(s) 328, 371
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 9 cut(s) 54, 134, 174, 219, 273, 279, 442, 531, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 246, 276, 541
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 7 cut(s) 12, 214, 249, 452, 488, 574, 578
Lsp1109I GCAGC 3 cut(s) 241, 257, 526
MboII GAAGA 4 cut(s) 121, 202, 343, 445
MfeI CAATTG 2 cut(s) 183, 274
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 5 cut(s) 49, 183, 274, 493, 522
MnlI CCTC 6 cut(s) 52, 207, 260, 260, 409, 499
Mph1103I ATGCAT 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 511
MunI CAATTG 2 cut(s) 183, 274
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 511
MwoI GCNNNNNNNGC 4 cut(s) 51, 246, 276, 541
NlaIII CATG 7 cut(s) 12, 214, 249, 452, 488, 574, 578
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 1 cut(s) 574
PceI AGGCCT 1 cut(s) 509
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 64, 122
PkrI GCNGC 3 cut(s) 231, 272, 516
Psp6I CCWGG 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 509
PspPI GGNCC 2 cut(s) 254, 549
PstNI CAGNNNCTG 1 cut(s) 541
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 447
SatI GCNGC 3 cut(s) 230, 271, 515
Sau96I GGNCC 2 cut(s) 254, 549
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 1 cut(s) 444
SetI ASST 7 cut(s) 173, 218, 293, 363, 432, 540, 554
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 5 cut(s) 49, 183, 274, 493, 522
SseBI AGGCCT 1 cut(s) 509
StuI AGGCCT 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 509
StyI CCWWGG 2 cut(s) 167, 196
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 318
TasI AATT 5 cut(s) 49, 183, 274, 493, 522
TfiI GAWTC 2 cut(s) 64, 122
TseI GCWGC 3 cut(s) 229, 270, 514
TspDTI ATGAA 5 cut(s) 140, 353, 465, 487, 501
VneI GTGCAC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 549
XceI RCATGY 1 cut(s) 574
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.