Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Reverse (-)

60428913 .. 60429137

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGAGAACGAGGACGACTACAGAACCGCAGATAGTGGCGATGAAGAATCACTGAGCTACAGCGCGGGCGACGATGACTATCTTCCAGAAGATGAACAAGTCGATGACTTTGGTGAGGGTCGATGTCCACAGGAAAATTATATTCTTCTAAAACAAGAAGAAATTGCCAAACTTCAGCAGGATTGTATTTCAGAAGTGTCGGTCGATGTCCATATCCAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

74

Amino Acids

8.45

Weight (kDa)

4.05

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	27, 65
AcuI	CTGAAG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	125
BfmI	CTRYAG	2 cut(s)	19, 58
BsaBI	GATNNNNATC	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	27, 65
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	65
BstMCI	CGRYCG	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	19, 58
BstUI	CGCG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	65
CviJI	RGCY	1 cut(s)	57
CviKI_1	RGCY	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	158
FaiI	YATR	2 cut(s)	141, 213
FauI	CCCGC	1 cut(s)	58
GlaI	GCGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	193, 224
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	53
HspAI	GCGC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	99, 116, 164
MboII	GAAGA	5 cut(s)	56, 74, 101, 137, 170
MluCI	AATT	2 cut(s)	136, 162
MnlI	CCTC	2 cut(s)	4, 109
MvnI	CGCG	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	47
SetI	ASST	1 cut(s)	59
SfcI	CTRYAG	2 cut(s)	19, 58
SgeI	CNNG	8 cut(s)	22, 76, 78, 98, 110, 143, 167, 191
Sse9I	AATT	2 cut(s)	136, 162
SsiI	CCGC	2 cut(s)	27, 65
TaqI	TCGA	3 cut(s)	102, 121, 204
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	2 cut(s)	136, 162
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	57, 108
TspRI	CASTG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.