Rh6CG421900

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000864
Physical Location & Seq
Reverse (-)
60509261 .. 60515739
6479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG421900.1

Sequence Viewer

Length: 819 bp
ATGGAGAACAAGGACGACTACAGAACCGCAGATAGTGGCGATGAAGAATCACTGAGCTACAGCGTGGGCGATGATGACTATCTTCCAGAAGATGAACAAGTCGATGACTTTGATAAAGTCCGAGACAAGGCAGGCTTGTTGAAGAAACCAATAGTCGAACATAATGCTAGCCAAAATCTAACAACTACTTGCGAAATATGCTTCGAGGAGTACTACTATTCATTAGATGCATCATCTAGGAGTAATAGTATTCTCACAGCCTCTTGTGGACATCCTTATTGTCGAGATTGTTGGGTAGGTTATATAAGCACGTCAATCAGTGAGGGTGGTCCTGCCTGTTTGATGCTCAGGTGTCCTCAACCGAAGTGTAGTGCAGCAGTTGGTCATGATTTAATCCAAAAGGTGTTGTTGACTACAAACCACGGAACTGCCTATGACAAATACAAGCGCTACCAGTTAAGATCTTATGTCGAAAATCACAGGAAGATCAAATGGTCATTTGGGACAGGGATGAGTGTTGTCGAGAGCCAAAAGAAGAAGGCGAAGATGTATTTAGAGAGATACCTTCATTATTTTGAACGCTGGGACAACAATGGAAAATCAAAGCAGAAGGCTCTTGAGGATTTTGATAAGGTGAAGAATGTGCACATACATGAACTTGGAAAGATACAGGGAAATACAAAAGAGCATGAATACAATTTCATCATAGAGGCCTGGCAACAGATAATAATATGCAGGCAGGTACTGCGATGGGCCTATGCTTATGGCTACTACATGAGTGCTGATGAGCCTCGCAAGCGTCAGCTATTCAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RanBP

Protein Analysis

272

Amino Acids

31.67

Weight (kDa)

6.32

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 730
AciI CCGC 1 cut(s) 27
AfaI GTAC 2 cut(s) 212, 744
AfeI AGCGCT 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 3 cut(s) 142, 578, 811
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 1 cut(s) 713
AluBI AGCT 2 cut(s) 57, 805
AluI AGCT 2 cut(s) 57, 805
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 1 cut(s) 117
Alw44I GTGCAC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 745
Aor51HI AGCGCT 1 cut(s) 449
AoxI GGCC 2 cut(s) 711, 753
ApaLI GTGCAC 1 cut(s) 644
ApeKI GCWGC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 329, 753
AsuHPI GGTGA 1 cut(s) 646
AsuNHI GCTAGC 1 cut(s) 167
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 744
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 3 cut(s) 168, 237, 817
BfmI CTRYAG 2 cut(s) 19, 58
BfoI RGCGCY 1 cut(s) 451
BfuAI ACCTGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 461
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 2 cut(s) 329, 753
BmrFI CCNGG 1 cut(s) 715
BmsI GCATC 3 cut(s) 217, 239, 333
BmtI GCTAGC 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 715
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 271, 516
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 44, 361
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 582
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 2 cut(s) 713, 755
BsiHKAI GWGCWC 1 cut(s) 648
BslFI GGGAC 2 cut(s) 517, 599
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 517, 599
BsnI GGCC 2 cut(s) 713, 755
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 2 cut(s) 461, 486
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 713, 755
BspCNI CTCAG 2 cut(s) 45, 360
BspHI TCATGA 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 2 cut(s) 461, 486
Bst2UI CCWGG 1 cut(s) 715
BstAPI GCANNNNNTGC 1 cut(s) 745
BstC8I GCNNGC 4 cut(s) 133, 169, 737, 797
BstDEI CTNAG 2 cut(s) 53, 347
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 2 cut(s) 271, 516
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 2 cut(s) 464, 489
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 461, 486
BstMWI GCNNNNNNNGC 3 cut(s) 198, 745, 796
BstNI CCWGG 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 713
BstSFI CTRYAG 2 cut(s) 19, 58
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 2 cut(s) 713, 755
BtgI CCRYGG 1 cut(s) 421
BtgZI GCGATG 3 cut(s) 54, 84, 763
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 271, 516
BtsIMutI CAGTG 2 cut(s) 50, 325
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 4 cut(s) 133, 169, 737, 797
CaiI CAGNNNCTG 1 cut(s) 745
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 329, 753
CseI GACGC 1 cut(s) 788
Csp6I GTAC 2 cut(s) 211, 743
CviAII CATG 4 cut(s) 386, 653, 689, 775
CviQI GTAC 2 cut(s) 211, 743
DdeI CTNAG 2 cut(s) 53, 347
DpnI GATC 2 cut(s) 463, 488
DpnII GATC 2 cut(s) 461, 486
Eco147I AGGCCT 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 329
Eco47III AGCGCT 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 4 cut(s) 389, 656, 692, 778
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 2 cut(s) 517, 599
FatI CATG 4 cut(s) 385, 652, 688, 774
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 2 cut(s) 258, 523
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 3 cut(s) 168, 237, 817
GlaI GCGC 1 cut(s) 449
GluI GCNGC 1 cut(s) 375
GsaI CCCAGC 1 cut(s) 586
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 2 cut(s) 713, 755
HgaI GACGC 1 cut(s) 788
HhaI GCGC 1 cut(s) 450
Hin1II CATG 4 cut(s) 389, 656, 692, 778
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 1 cut(s) 47
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 3 cut(s) 269, 411, 646
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 5 cut(s) 86, 284, 386, 523, 617
Hpy8I GTNNAC 3 cut(s) 269, 411, 646
HpyAV CCTTC 3 cut(s) 532, 575, 604
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 230, 374, 646, 735
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 745, 796
HpyF3I CTNAG 2 cut(s) 53, 347
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 4 cut(s) 389, 656, 692, 778
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 2 cut(s) 461, 486
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 3 cut(s) 217, 239, 333
MaeI CTAG 3 cut(s) 168, 237, 817
MaeII ACGT 1 cut(s) 311
MalI GATC 2 cut(s) 463, 488
MboI GATC 2 cut(s) 461, 486
MboII GAAGA 8 cut(s) 56, 74, 101, 154, 496, 547, 556, 649
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 1 cut(s) 697
MnlI CCTC 7 cut(s) 199, 271, 316, 366, 613, 703, 801
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 2 cut(s) 392, 458
MslI CAYNNNNRTG 1 cut(s) 651
MspR9I CCNGG 1 cut(s) 715
MvaI CCWGG 1 cut(s) 715
MwoI GCNNNNNNNGC 3 cut(s) 198, 745, 796
NdeII GATC 2 cut(s) 461, 486
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 4 cut(s) 389, 656, 692, 778
NsiI ATGCAT 1 cut(s) 232
PagI TCATGA 1 cut(s) 385
PceI AGGCCT 1 cut(s) 713
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 713
PspFI CCCAGC 1 cut(s) 582
PspGI CCWGG 1 cut(s) 713
PspPI GGNCC 2 cut(s) 329, 753
PstNI CAGNNNCTG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 2 cut(s) 212, 744
RsaNI GTAC 2 cut(s) 211, 743
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 2 cut(s) 392, 458
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 2 cut(s) 461, 486
Sau96I GGNCC 2 cut(s) 329, 753
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 715
SduI GDGCHC 1 cut(s) 648
SetI ASST 9 cut(s) 59, 301, 314, 353, 405, 567, 636, 744, 807
SfaNI GCATC 3 cut(s) 217, 239, 333
SfcI CTRYAG 2 cut(s) 19, 58
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 1 cut(s) 697
SseBI AGGCCT 1 cut(s) 713
SsiI CCGC 1 cut(s) 27
SspMI CTAG 3 cut(s) 168, 237, 817
StuI AGGCCT 1 cut(s) 713
StyD4I CCNGG 1 cut(s) 713
TaiI ACGT 1 cut(s) 314
TaqI TCGA 6 cut(s) 102, 156, 204, 283, 471, 522
TasI AATT 1 cut(s) 697
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 392, 458
Tru9I TTAA 2 cut(s) 392, 458
TscAI CASTG 2 cut(s) 57, 325
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 7 cut(s) 57, 108, 210, 557, 669, 691, 705
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 2 cut(s) 57, 325
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 329
XspI CTAG 3 cut(s) 168, 237, 817
ZrmI AGTACT 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.