RLG00000011352

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000864
Physical Location & Seq
Forward (+)
8815398 .. 8816045
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011352

Sequence Viewer

Length: 648 bp
ATGAGGTGCAGATATGGGCAGCAGTTCTGCTGGTCATGCCTCGGCCCTTTGGATAGAGGCTGCAATTGCAATAAATACAGGTCATCTGGGACAGGGATGAGTGCTGTCGAGAGCCAAAAGAAGAAGGCGAAGATGTATTTAGAGAGATACCTTCATTATTTTGAACGCTGGGACAACAATGGAAAATCAAAGCAAAAGGCTCTTGTGGATTTTGATAAGGTGAAGAATGTGCACATACATGAACTTGGAAAGATACAGGGAAATACAAAAGTGCATGAATACAATTTCATCATAGAGGCCTGGCAACAGATAATTACATGCAGGCAGGTACTGCGATGGACCTATGCTTATGGCTACTACATGAGTGATGATGAGCCTCGCAAGCGTCAGCTATTCGAGATCTTGCAAGGCCATGCCGAGTTCAGCCTCGAGAGGCTTCACCAGTGTGCCAAGAGCGAACTGCTGCATTTTCTTGTCTGTGGTGATAACAATGACCACTTGCTGAAAATTTACGAGGATTTTAGAAAGAGACTCATAAACCTGACAAAGGTGACTGGAACTTATTTTAAGAAGCTGGCTAGTGCACTGGAGGAGGGCCTTCCTGAGACGTGCCCCTATGACGAGGCTAGTTGGAGTACCTGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RanBP

Protein Analysis

216

Amino Acids

25.46

Weight (kDa)

8.63

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ariadne PF19422 48 - 200 1.7e-06 Ariadne domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 2 cut(s) 330, 637
AfiI CCNNNNNNNGG 1 cut(s) 547
AgsI TTSAA 1 cut(s) 164
AjiI CACGTC 1 cut(s) 609
AjnI CCWGG 2 cut(s) 299, 638
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 2 cut(s) 391, 574
AluI AGCT 2 cut(s) 391, 574
Alw21I GWGCWC 2 cut(s) 234, 586
Alw26I GTCTC 2 cut(s) 523, 599
Alw44I GTGCAC 2 cut(s) 230, 582
AlwNI CAGNNNCTG 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 4 cut(s) 43, 297, 409, 595
ApaLI GTGCAC 2 cut(s) 230, 582
ApeKI GCWGC 3 cut(s) 19, 60, 463
ApoI RAATTY 1 cut(s) 507
AspS9I GGNCC 3 cut(s) 44, 339, 595
AsuHPI GGTGA 4 cut(s) 232, 431, 494, 562
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 3 cut(s) 234, 586, 614
Bbv12I GWGCWC 2 cut(s) 234, 586
BbvI GCAGC 3 cut(s) 31, 47, 450
BccI CCATC 1 cut(s) 330
BciT130I CCWGG 2 cut(s) 301, 640
BcoDI GTCTC 2 cut(s) 523, 599
BfaI CTAG 3 cut(s) 579, 627, 646
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 399
BisI GCNGC 3 cut(s) 20, 61, 464
BlsI GCNGC 3 cut(s) 21, 62, 465
Bme1390I CCNGG 2 cut(s) 301, 640
Bme18I GGWCC 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 609
BmgT120I GGNCC 3 cut(s) 44, 339, 595
BmrFI CCNGG 2 cut(s) 301, 640
BpmI CTGGAG 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 40, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse1I ACTGG 3 cut(s) 442, 559, 591
BseBI CCWGG 2 cut(s) 301, 640
BseDI CCNNGG 2 cut(s) 40, 639
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 3 cut(s) 442, 559, 591
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 3 cut(s) 234, 586, 614
BseXI GCAGC 3 cut(s) 31, 47, 450
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 4 cut(s) 45, 299, 411, 597
BsiHKAI GWGCWC 2 cut(s) 234, 586
BsiHKCI CYCGRG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 103, 185
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 2 cut(s) 523, 599
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 2 cut(s) 103, 185
BsnI GGCC 4 cut(s) 45, 299, 411, 597
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 234, 586, 614
Bsp143I GATC 1 cut(s) 399
BspANI GGCC 4 cut(s) 45, 299, 411, 597
BspCNI CTCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 316
BsrI ACTGG 3 cut(s) 442, 559, 591
BssECI CCNNGG 2 cut(s) 40, 639
BssMI GATC 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 301, 640
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 323, 383, 576
BstDEI CTNAG 1 cut(s) 603
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 2 cut(s) 523, 599
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 4 cut(s) 36, 66, 331, 382
BstNI CCWGG 2 cut(s) 301, 640
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 299, 638
BstSLI GKGCMC 3 cut(s) 234, 586, 614
BstV1I GCAGC 3 cut(s) 31, 47, 450
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BsuRI GGCC 4 cut(s) 45, 299, 411, 597
BtgZI GCGATG 1 cut(s) 349
BtrI CACGTC 1 cut(s) 609
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 449, 584
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 3 cut(s) 323, 383, 576
CaiI CAGNNNCTG 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 44, 339, 595
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 329, 636
CviAII CATG 6 cut(s) 36, 239, 275, 318, 361, 413
CviQI GTAC 2 cut(s) 329, 636
DdeI CTNAG 1 cut(s) 603
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 299, 638
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 6 cut(s) 39, 242, 278, 321, 364, 416
FaqI GGGAC 2 cut(s) 103, 185
FatI CATG 6 cut(s) 35, 238, 274, 317, 360, 412
Fnu4HI GCNGC 3 cut(s) 20, 61, 464
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 20, 61, 464
FspBI CTAG 3 cut(s) 579, 627, 646
GluI GCNGC 3 cut(s) 20, 61, 464
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 4 cut(s) 45, 299, 411, 597
HgaI GACGC 1 cut(s) 374
Hin1II CATG 6 cut(s) 39, 242, 278, 321, 364, 416
HinfI GANTC 1 cut(s) 531
HphI GGTGA 4 cut(s) 232, 431, 494, 562
Hpy166II GTNNAC 2 cut(s) 232, 584
Hpy188III TCNNGA 4 cut(s) 109, 397, 430, 602
Hpy8I GTNNAC 2 cut(s) 232, 584
HpyAV CCTTC 3 cut(s) 118, 161, 608
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 9 cut(s) 9, 63, 69, 232, 274, 321, 406, 466, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 66, 331, 382
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 6 cut(s) 39, 242, 278, 321, 364, 416
Kzo9I GATC 1 cut(s) 399
Lsp1109I GCAGC 3 cut(s) 31, 47, 450
MaeI CTAG 3 cut(s) 579, 627, 646
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 1 cut(s) 550
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 3 cut(s) 133, 142, 235
MfeI CAATTG 1 cut(s) 64
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 3 cut(s) 234, 586, 614
MluCI AATT 4 cut(s) 64, 283, 312, 507
MlyI GAGTC 1 cut(s) 525
MmeI TCCRAC 1 cut(s) 611
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 2 cut(s) 237, 444
MspR9I CCNGG 2 cut(s) 301, 640
MunI CAATTG 1 cut(s) 64
MvaI CCWGG 2 cut(s) 301, 640
MwoI GCNNNNNNNGC 4 cut(s) 36, 66, 331, 382
NdeII GATC 1 cut(s) 399
NlaIII CATG 6 cut(s) 39, 242, 278, 321, 364, 416
NmeAIII GCCGAG 2 cut(s) 21, 442
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 1 cut(s) 321
OliI CACNNNNGTG 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 428
PceI AGGCCT 1 cut(s) 299
PkrI GCNGC 3 cut(s) 21, 62, 465
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 299, 638
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 2 cut(s) 299, 638
PspPI GGNCC 3 cut(s) 44, 339, 595
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 399
RsaI GTAC 2 cut(s) 330, 637
RsaNI GTAC 2 cut(s) 329, 636
RseI CAYNNNNRTG 2 cut(s) 237, 444
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 3 cut(s) 20, 61, 464
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 3 cut(s) 44, 339, 595
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 2 cut(s) 301, 640
SduI GDGCHC 3 cut(s) 234, 586, 614
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 2 cut(s) 237, 444
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 64, 283, 312, 507
SseBI AGGCCT 1 cut(s) 299
SspMI CTAG 3 cut(s) 579, 627, 646
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 299, 638
TaiI ACGT 1 cut(s) 611
TaqI TCGA 3 cut(s) 108, 396, 429
TasI AATT 4 cut(s) 64, 283, 312, 507
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 449, 591
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 3 cut(s) 19, 60, 463
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 4 cut(s) 143, 255, 277, 291
TspRI CASTG 2 cut(s) 449, 591
VneI GTGCAC 2 cut(s) 230, 582
VpaK11BI GGWCC 1 cut(s) 339
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 3 cut(s) 579, 627, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.