Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Forward (+)

131101 .. 131548

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001670.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggagaacgaggacgactacagaaccgcagatagtggcgatgaagaatcactgagctacagcgcgggcgacgatgactatcttccagaagatgaacaagtcaatgactttggtgagaagtgtcggtcgatgtccatttccaaatctgatgcatgcttactactccctcactttcattggagtgttgaggatctacaagatgaatggtttgctggtgaagacaaagtccgagacaaggcaggcttgttgaagaaaccaatagtcgaacataatgctagccaaaatgatgcagaacggatggcagcccaattcgaagagcagtttgatcgtgcaagaggaggaaaacaaaagttactagtagctacgccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

123

Amino Acids

13.96

Weight (kDa)

4.36

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	27, 65
AclWI	GGATC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	250
AhlI	ACTAGT	1 cut(s)	355
AluBI	AGCT	2 cut(s)	57, 362
AluI	AGCT	2 cut(s)	57, 362
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	125, 227
AsuII	TTCGAA	1 cut(s)	312
AsuNHI	GCTAGC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	1 cut(s)	292
BcgI	CGANNNNNNTGC	4 cut(s)	254, 288, 308, 342
BcoDI	GTCTC	1 cut(s)	225
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	2 cut(s)	276, 356
BfmI	CTRYAG	2 cut(s)	19, 58
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmsI	GCATC	2 cut(s)	139, 277
BmtI	GCTAGC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	78
BseGI	GGATG	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	225
Bsp119I	TTCGAA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	190, 325
BspACI	CCGC	2 cut(s)	27, 65
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	65
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	312
BssMI	GATC	2 cut(s)	190, 325
Bst6I	CTCTTC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	4 cut(s)	67, 154, 241, 277
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	193, 328
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	190, 325
BstMCI	CGRYCG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	156
BstSFI	CTRYAG	2 cut(s)	19, 58
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	67, 154, 241, 277
CfoI	GCGC	1 cut(s)	65
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	5 cut(s)	57, 243, 279, 305, 362
CviKI_1	RGCY	5 cut(s)	57, 243, 279, 305, 362
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	192, 327
DpnII	GATC	2 cut(s)	190, 325
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	154
FaeI	CATG	1 cut(s)	156
FaiI	YATR	3 cut(s)	154, 270, 370
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	1 cut(s)	152
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	276, 356
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	2 cut(s)	125, 227
Hpy188I	TCNGA	2 cut(s)	148, 230
Hpy188III	TCNNGA	1 cut(s)	86
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	152, 290, 332
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	190, 325
LguI	GCTCTTC	1 cut(s)	309
LpnPI	CCDG	3 cut(s)	99, 198, 225
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	139, 277
MaeI	CTAG	2 cut(s)	276, 356
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	2 cut(s)	192, 327
MboI	GATC	2 cut(s)	190, 325
MboII	GAAGA	6 cut(s)	56, 74, 101, 230, 262, 326
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	1 cut(s)	308
MnlI	CCTC	5 cut(s)	4, 177, 181, 329, 332
Mph1103I	ATGCAT	1 cut(s)	154
MslI	CAYNNNNRTG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	65
NdeII	GATC	2 cut(s)	190, 325
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	156
NspV	TTCGAA	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	190, 325
SetI	ASST	2 cut(s)	59, 364
SfaNI	GCATC	2 cut(s)	139, 277
SfcI	CTRYAG	2 cut(s)	19, 58
SfuI	TTCGAA	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	180
SpeI	ACTAGT	1 cut(s)	355
SphI	GCATGC	1 cut(s)	156
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	2 cut(s)	27, 65
SspMI	CTAG	2 cut(s)	276, 356
TaqI	TCGA	3 cut(s)	128, 264, 312
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	4 cut(s)	57, 108, 164, 216
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	2 cut(s)	276, 356
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.