Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Reverse (-)

60785861 .. 60788631

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGAAAAGGGAGAGCAGCAGTGGAAGTAGTGCTAGCGAGGACTCCAGTTATCTTGAAGAAGAAGTAAATGTGGACTCTGACGACGACTCAAATTATCTTGAAGGAGGAAACTCAGACGCCAATGTGTTCTCTGGGGAGGGTCAGTCTCCACGGCAGGGTTATACTTTACTGAGAGAAGAAGAAATTGGCCAACTTCAGGAGGATGATATTGCAGGAGTGTCTACTGTCCTGTCCATATCGAAATCCGCTGCATGCTTCCTACTATGTCACTTTAGTTGGAGGGTCAATAGACTGAAGGACGAATGGTTTTCTGATGAAGACAAAGTCCGGGAAGCAGCAGGCTTGTTGAGGAAGCCGGTATTCCTGCATCGATTAGGTAGTGTCAATTGCGGAATATGTTTTGATGACTATGACTATTCATGCGATGAATTAGCCGGTGGTACTATTTTCTCAGCTGCTTGTGGTCATCCTTTTTGTAAAGATTGTTGGACAGGTTATATTAGCACATCGATTAACGATGGTCCGGGATGTTTGATGCTGAGATGTCCTGAACCATCTTGTAGTGCAGCAGTTGATCGGGATTTGATCCGAAATGTGTTGAAAAACCAACATGATCACGAGATTGAGAGGTATAAGCGCTACCTTCTGAGATCTTATGTCGAAAAGCATAAGCAGATGAAGTGGTGCCCTGCTCCTGACTGTGAGTATGCTGTCAAAGTGTTTGATGAAGATTTGACTGGAAATGGAAGCTGTTATGATGTTTCTTGCATCTGCTCAAATAGCTTCTGCTGGAATTGTGTTGAGGAGGTTCATAGTCCCGTTCAGTGCGACACTGTGGGAAAGTGGATAATGAAGAACAAGGATGATTCCCAGAATGCACAATGGATAGTGGTTAATACTAAGCCCTGTCCCAAGTGCAAAACACCGATTGAGAAGAACAATGGGTGTAATCACATGAGGTGCAGTCCGCCTTGTGGGCATCACTTTTGCTGGTTATGCCTTGGGCCACTTGGTTGCAAGTGCAATAGTTTCAATCGAGCTGCAAACCAAAATGCGAAGAAGGAGGAGAGTCAGAGTGAAAGGGAGAGGAAGAGGCTAAAGATGAGTTTAGAGAGATACAATCATTATTATGTGCGCTGGGCAAACAATCAAGCTTCAAAGAAAAAGGCAGTTGAGTCATTGCGTAAGGCGCAAACAGTGCACATCGTGAAACTTGCTAGCAAACCAATTCCCTTTCTTACCAAGACTAATGATTTCGAGTTCATTATAGAGGCATGGAAACAGATAATTGAATGTAGGCAGGTGATCAAATGGACCTATGCATATGGTTATTACATACCCGAGGAAAATAAATATGACAAGAAGCGGCAGCTGTTTGAGTACTTGCAGGGCCAAGCAGAGCACAGCCTGGAGAGGCTTCACCAATGTGCCGAGACTGAAATGATAGAGTTTGTCAAGGATTGGGCCCCGTTGGAAAAGTTCCCGGACTTCCGTCTAAAGCTCATACAATTGACAAATGTGACCGGTACTTATTTTAAGAAGCTGGTTACAGCCCTGGAGAATGGCCTCTCGGAGGTGGAGACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

529

Amino Acids

60.58

Weight (kDa)

5.94

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	64 - 103	3.4e-08	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR	PF01485	209 - 276	5.8e-15	IBR domain, a half RING-finger domain
IBR_2	PF22605	296 - 341	6.9e-11	IBR domain
IBR_1	PF22191	299 - 336	3.9e-10	IBR domain
Ariadne	PF19422	371 - 523	1.2e-09	Ariadne domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1291
Acc36I	ACCTGC	1 cut(s)	1291
AccB1I	GGYRCC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	4 cut(s)	246, 390, 968, 1366
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	179, 314
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	1207
AfaI	GTAC	3 cut(s)	442, 1382, 1528
AfeI	AGCGCT	1 cut(s)	638
AfiI	CCNNNNNNNGG	4 cut(s)	155, 196, 974, 1573
AgeI	ACCGGT	1 cut(s)	1523
AgsI	TTSAA	6 cut(s)	56, 101, 601, 1033, 1158, 1292
AjnI	CCWGG	2 cut(s)	1407, 1554
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AleI	CACNNNNGTG	1 cut(s)	1425
AluBI	AGCT	9 cut(s)	455, 750, 783, 1040, 1154, 1372, 1501, 1543, 1587
AluI	AGCT	9 cut(s)	455, 750, 783, 1040, 1154, 1372, 1501, 1543, 1587
Alw21I	GWGCWC	2 cut(s)	1203, 1404
Alw26I	GTCTC	3 cut(s)	150, 1427, 1574
Alw44I	GTGCAC	1 cut(s)	1199
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	1340
Aor51HI	AGCGCT	1 cut(s)	638
AoxI	GGCC	5 cut(s)	187, 1004, 1390, 1464, 1564
ApaI	GGGCCC	1 cut(s)	1468
ApaLI	GTGCAC	1 cut(s)	1199
ApeKI	GCWGC	7 cut(s)	15, 248, 335, 455, 566, 1040, 1369
AsiGI	ACCGGT	1 cut(s)	1523
AspLEI	GCGC	3 cut(s)	639, 1137, 1192
AspS9I	GGNCC	6 cut(s)	521, 1004, 1314, 1390, 1464, 1465
AsuC2I	CCSGG	3 cut(s)	329, 525, 1484
AsuHPI	GGTGA	2 cut(s)	1315, 1412
AsuNHI	GCTAGC	2 cut(s)	32, 1217
AvaI	CYCGRG	1 cut(s)	1340
AvaII	GGWCC	2 cut(s)	521, 1314
BaeGI	GKGCMC	3 cut(s)	689, 1203, 1468
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	1468
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	1203, 1404
BbvI	GCAGC	7 cut(s)	27, 235, 347, 442, 578, 1027, 1381
BccI	CCATC	2 cut(s)	512, 562
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	1409, 1556
BclI	TGATCA	2 cut(s)	613, 1305
BcnI	CCSGG	3 cut(s)	329, 525, 1484
BcoDI	GTCTC	3 cut(s)	150, 1427, 1574
BfaI	CTAG	4 cut(s)	33, 1218, 1584, 1588
BfoI	RGCGCY	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	1291
BglI	GCCNNNNNGGC	1 cut(s)	976
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	8 cut(s)	16, 249, 336, 456, 567, 1041, 1367, 1370
BlsI	GCNGC	8 cut(s)	17, 250, 337, 457, 568, 1042, 1368, 1371
BmcAI	AGTACT	1 cut(s)	1382
Bme1390I	CCNGG	5 cut(s)	329, 525, 1409, 1484, 1556
Bme18I	GGWCC	2 cut(s)	521, 1314
BmeT110I	CYCGRG	1 cut(s)	1340
BmgT120I	GGNCC	6 cut(s)	521, 1004, 1314, 1390, 1464, 1465
BmiI	GGNNCC	3 cut(s)	686, 1466, 1467
BmrFI	CCNGG	5 cut(s)	329, 525, 1409, 1484, 1556
BmsI	GCATC	4 cut(s)	376, 525, 777, 988
BmtI	GCTAGC	2 cut(s)	36, 1221
BoxI	GACNNNNGTC	1 cut(s)	1491
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	3 cut(s)	28, 1430, 1577
BpuMI	CCSGG	3 cut(s)	329, 525, 1484
Bsa29I	ATCGAT	2 cut(s)	370, 509
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	149, 1000, 1341, 1554
BsaWI	WCCGGW	1 cut(s)	1523
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 196, 974, 1573
Bse118I	RCCGGY	3 cut(s)	355, 434, 1523
Bse1I	ACTGG	2 cut(s)	45, 742
Bse3DI	GCAATG	1 cut(s)	1178
BseBI	CCWGG	2 cut(s)	1409, 1556
BseCI	ATCGAT	2 cut(s)	370, 509
BseDI	CCNNGG	4 cut(s)	149, 1000, 1341, 1554
BseGI	GGATG	4 cut(s)	208, 466, 533, 868
BseLI	CCNNNNNNNGG	4 cut(s)	155, 196, 974, 1573
BseMI	GCAATG	1 cut(s)	1178
BseMII	CTCAG	5 cut(s)	126, 161, 465, 530, 638
BseNI	ACTGG	2 cut(s)	45, 742
BseRI	GAGGAG	2 cut(s)	818, 1079
BseSI	GKGCMC	3 cut(s)	689, 1203, 1468
BseXI	GCAGC	7 cut(s)	27, 235, 347, 442, 578, 1027, 1381
BseYI	CCCAGC	1 cut(s)	1137
BsgI	GTGCAG	2 cut(s)	585, 982
BshFI	GGCC	5 cut(s)	189, 1006, 1392, 1466, 1566
BshNI	GGYRCC	1 cut(s)	684
BshTI	ACCGGT	1 cut(s)	1523
BshVI	ATCGAT	2 cut(s)	370, 509
BsiHKAI	GWGCWC	2 cut(s)	1203, 1404
BsiHKCI	CYCGRG	1 cut(s)	1340
BsiSI	CCGG	6 cut(s)	328, 356, 435, 524, 1484, 1524
BslFI	GGGAC	2 cut(s)	801, 894
BslI	CCNNNNNNNGG	4 cut(s)	155, 196, 974, 1573
BsmAI	GTCTC	3 cut(s)	150, 1427, 1574
BsmFI	GGGAC	2 cut(s)	801, 894
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	5 cut(s)	189, 1006, 1392, 1466, 1566
BsoBI	CYCGRG	1 cut(s)	1340
Bsp120I	GGGCCC	1 cut(s)	1464
Bsp1286I	GDGCHC	4 cut(s)	689, 1203, 1404, 1468
Bsp143I	GATC	5 cut(s)	574, 585, 613, 650, 1305
BspACI	CCGC	4 cut(s)	246, 390, 968, 1366
BspANI	GGCC	5 cut(s)	189, 1006, 1392, 1466, 1566
BspCNI	CTCAG	5 cut(s)	125, 162, 464, 531, 639
BspDI	ATCGAT	2 cut(s)	370, 509
BspLI	GGNNCC	3 cut(s)	686, 1466, 1467
BspMI	ACCTGC	1 cut(s)	1291
BspOI	GCTAGC	2 cut(s)	36, 1221
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	1178
BsrFI	RCCGGY	3 cut(s)	355, 434, 1523
BsrI	ACTGG	2 cut(s)	45, 742
BssAI	RCCGGY	3 cut(s)	355, 434, 1523
BssECI	CCNNGG	4 cut(s)	149, 1000, 1341, 1554
BssMI	GATC	5 cut(s)	574, 585, 613, 650, 1305
BssNI	GRCGYC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	1000
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	2 cut(s)	1409, 1556
Bst4CI	ACNGT	4 cut(s)	226, 701, 835, 1198
Bst6I	CTCTTC	1 cut(s)	1085
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	1198
BstC8I	GCNNGC	4 cut(s)	34, 253, 340, 1219
BstDEI	CTNAG	6 cut(s)	112, 170, 451, 539, 647, 900
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	1571
BstF5I	GGATG	4 cut(s)	208, 466, 533, 868
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	3 cut(s)	639, 1137, 1192
BstKTI	GATC	5 cut(s)	577, 588, 616, 653, 1308
BstMAI	GTCTC	3 cut(s)	150, 1427, 1574
BstMBI	GATC	5 cut(s)	574, 585, 613, 650, 1305
BstMWI	GCNNNNNNNGC	5 cut(s)	780, 976, 996, 1189, 1198
BstNI	CCWGG	2 cut(s)	1409, 1556
BstNSI	RCATGY	1 cut(s)	255
BstPAI	GACNNNNGTC	1 cut(s)	1491
BstSCI	CCNGG	5 cut(s)	327, 523, 1407, 1482, 1554
BstSLI	GKGCMC	3 cut(s)	689, 1203, 1468
BstV1I	GCAGC	7 cut(s)	27, 235, 347, 442, 578, 1027, 1381
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
Bsu15I	ATCGAT	2 cut(s)	370, 509
BsuRI	GGCC	5 cut(s)	189, 1006, 1392, 1466, 1566
BsuTUI	ATCGAT	2 cut(s)	370, 509
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	4 cut(s)	208, 466, 533, 868
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	4 cut(s)	25, 830, 831, 1203
BveI	ACCTGC	1 cut(s)	1291
Cac8I	GCNNGC	4 cut(s)	34, 253, 340, 1219
CfoI	GCGC	3 cut(s)	639, 1137, 1192
Cfr10I	RCCGGY	3 cut(s)	355, 434, 1523
Cfr13I	GGNCC	6 cut(s)	521, 1004, 1314, 1390, 1464, 1465
ClaI	ATCGAT	2 cut(s)	370, 509
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	441, 1381, 1527
CspAI	ACCGGT	1 cut(s)	1523
CviAII	CATG	5 cut(s)	252, 420, 611, 955, 1275
CviQI	GTAC	3 cut(s)	441, 1381, 1527
DdeI	CTNAG	6 cut(s)	112, 170, 451, 539, 647, 900
DpnI	GATC	5 cut(s)	576, 587, 615, 652, 1307
DpnII	GATC	5 cut(s)	574, 585, 613, 650, 1305
DraIII	CACNNNGTG	1 cut(s)	1207
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	1085
EarI	CTCTTC	1 cut(s)	1085
EciI	GGCGGA	1 cut(s)	957
Eco130I	CCWWGG	1 cut(s)	1000
Eco24I	GRGCYC	1 cut(s)	1468
Eco47I	GGWCC	2 cut(s)	521, 1314
Eco47III	AGCGCT	1 cut(s)	638
Eco57I	CTGAAG	2 cut(s)	179, 314
Eco88I	CYCGRG	1 cut(s)	1340
EcoNI	CCTNNNNNAGG	1 cut(s)	1571
EcoO109I	RGGNCCY	1 cut(s)	1465
EcoRII	CCWGG	2 cut(s)	1407, 1554
EcoT14I	CCWWGG	1 cut(s)	1000
EcoT22I	ATGCAT	1 cut(s)	1324
EcoT38I	GRGCYC	1 cut(s)	1468
ErhI	CCWWGG	1 cut(s)	1000
FaeI	CATG	5 cut(s)	255, 423, 614, 958, 1278
FaqI	GGGAC	2 cut(s)	801, 894
FatI	CATG	5 cut(s)	251, 419, 610, 954, 1274
FauNDI	CATATG	1 cut(s)	1324
FbaI	TGATCA	2 cut(s)	613, 1305
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	8 cut(s)	16, 249, 336, 456, 567, 1041, 1367, 1370
FokI	GGATG	4 cut(s)	215, 453, 540, 875
FriOI	GRGCYC	1 cut(s)	1468
Fsp4HI	GCNGC	8 cut(s)	16, 249, 336, 456, 567, 1041, 1367, 1370
FspBI	CTAG	4 cut(s)	33, 1218, 1584, 1588
GlaI	GCGC	3 cut(s)	638, 1136, 1191
GluI	GCNGC	8 cut(s)	16, 249, 336, 456, 567, 1041, 1367, 1370
GsaI	CCCAGC	1 cut(s)	1141
GsuI	CTGGAG	3 cut(s)	28, 1430, 1577
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	5 cut(s)	189, 1006, 1392, 1466, 1566
HapII	CCGG	6 cut(s)	328, 356, 435, 524, 1484, 1524
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	3 cut(s)	639, 1137, 1192
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	255, 423, 614, 958, 1278
Hin6I	GCGC	3 cut(s)	637, 1135, 1190
HinP1I	GCGC	3 cut(s)	637, 1135, 1190
HindIII	AAGCTT	1 cut(s)	1152
HinfI	GANTC	6 cut(s)	41, 74, 86, 866, 1069, 1175
HpaII	CCGG	6 cut(s)	328, 356, 435, 524, 1484, 1524
HphI	GGTGA	2 cut(s)	1315, 1412
Hpy166II	GTNNAC	3 cut(s)	73, 222, 1201
Hpy188I	TCNGA	7 cut(s)	79, 115, 313, 590, 648, 1074, 1573
Hpy188III	TCNNGA	8 cut(s)	53, 98, 197, 548, 578, 617, 695, 1207
Hpy8I	GTNNAC	3 cut(s)	73, 222, 1201
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	95, 289, 653, 1054
HpyCH4III	ACNGT	4 cut(s)	226, 701, 835, 1198
HpyF10VI	GCNNNNNNNGC	5 cut(s)	780, 976, 996, 1189, 1198
HpyF3I	CTNAG	6 cut(s)	112, 170, 451, 539, 647, 900
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	255, 423, 614, 958, 1278
HspAI	GCGC	3 cut(s)	637, 1135, 1190
Ksp22I	TGATCA	2 cut(s)	613, 1305
Kzo9I	GATC	5 cut(s)	574, 585, 613, 650, 1305
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	7 cut(s)	27, 235, 347, 442, 578, 1027, 1381
LweI	GCATC	4 cut(s)	376, 525, 777, 988
MaeI	CTAG	4 cut(s)	33, 1218, 1584, 1588
MaeIII	GTNAC	3 cut(s)	266, 1519, 1546
MalI	GATC	5 cut(s)	576, 587, 615, 652, 1307
MboI	GATC	5 cut(s)	574, 585, 613, 650, 1305
MfeI	CAATTG	2 cut(s)	385, 1508
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	4 cut(s)	689, 1203, 1404, 1468
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	8 cut(s)	91, 183, 385, 428, 793, 1227, 1287, 1508
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	5 cut(s)	35, 68, 80, 1078, 1184
MmeI	TCCRAC	3 cut(s)	257, 467, 1452
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	1324
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	3 cut(s)	513, 894, 1536
MslI	CAYNNNNRTG	2 cut(s)	1128, 1425
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	3 cut(s)	248, 455, 1372
MspI	CCGG	6 cut(s)	328, 356, 435, 524, 1484, 1524
MspR9I	CCNGG	5 cut(s)	329, 525, 1409, 1484, 1556
MunI	CAATTG	2 cut(s)	385, 1508
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	1409, 1556
MwoI	GCNNNNNNNGC	5 cut(s)	780, 976, 996, 1189, 1198
NciI	CCSGG	3 cut(s)	329, 525, 1484
NdeI	CATATG	1 cut(s)	1324
NdeII	GATC	5 cut(s)	574, 585, 613, 650, 1305
NheI	GCTAGC	2 cut(s)	32, 1217
NlaIII	CATG	5 cut(s)	255, 423, 614, 958, 1278
NlaIV	GGNNCC	3 cut(s)	686, 1466, 1467
NmeAIII	GCCGAG	1 cut(s)	1456
NmuCI	GTSAC	2 cut(s)	266, 1519
NsiI	ATGCAT	1 cut(s)	1324
NspI	RCATGY	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	1425
PaeI	GCATGC	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	1291
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	866
PflFI	GACNNNGTC	1 cut(s)	323
PfoI	TCCNGGA	3 cut(s)	327, 523, 1482
PinAI	ACCGGT	1 cut(s)	1523
PkrI	GCNGC	8 cut(s)	17, 250, 337, 457, 568, 1042, 1368, 1371
PleI	GAGTC	5 cut(s)	35, 68, 80, 1077, 1183
PpsI	GAGTC	5 cut(s)	35, 68, 80, 1077, 1183
PshAI	GACNNNNGTC	1 cut(s)	1491
Psp6I	CCWGG	2 cut(s)	1407, 1554
PspFI	CCCAGC	1 cut(s)	1137
PspGI	CCWGG	2 cut(s)	1407, 1554
PspN4I	GGNNCC	3 cut(s)	686, 1466, 1467
PspOMI	GGGCCC	1 cut(s)	1464
PspPI	GGNCC	6 cut(s)	521, 1004, 1314, 1390, 1464, 1465
PsuI	RGATCY	1 cut(s)	650
PsyI	GACNNNGTC	1 cut(s)	323
PvuII	CAGCTG	2 cut(s)	455, 1372
RsaI	GTAC	3 cut(s)	442, 1382, 1528
RsaNI	GTAC	3 cut(s)	441, 1381, 1527
RseI	CAYNNNNRTG	2 cut(s)	1128, 1425
SaqAI	TTAA	3 cut(s)	513, 894, 1536
SatI	GCNGC	8 cut(s)	16, 249, 336, 456, 567, 1041, 1367, 1370
Sau3AI	GATC	5 cut(s)	574, 585, 613, 650, 1305
Sau96I	GGNCC	6 cut(s)	521, 1004, 1314, 1390, 1464, 1465
ScaI	AGTACT	1 cut(s)	1382
SchI	GAGTC	5 cut(s)	35, 68, 80, 1078, 1184
ScrFI	CCNGG	5 cut(s)	329, 525, 1409, 1484, 1556
SduI	GDGCHC	4 cut(s)	689, 1203, 1404, 1468
SfaNI	GCATC	4 cut(s)	376, 525, 777, 988
SinI	GGWCC	2 cut(s)	521, 1314
SmiMI	CAYNNNNRTG	2 cut(s)	1128, 1425
SphI	GCATGC	1 cut(s)	255
Sse9I	AATT	8 cut(s)	91, 183, 385, 428, 793, 1227, 1287, 1508
SsiI	CCGC	4 cut(s)	246, 390, 968, 1366
SspMI	CTAG	4 cut(s)	33, 1218, 1584, 1588
StyD4I	CCNGG	5 cut(s)	327, 523, 1407, 1482, 1554
StyI	CCWWGG	1 cut(s)	1000
TaaI	ACNGT	4 cut(s)	226, 701, 835, 1198
TaqI	TCGA	6 cut(s)	239, 370, 509, 660, 1036, 1257
TasI	AATT	8 cut(s)	91, 183, 385, 428, 793, 1227, 1287, 1508
TatI	WGTACW	1 cut(s)	1380
TauI	GCSGC	1 cut(s)	1369
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	3 cut(s)	513, 894, 1536
Tru9I	TTAA	3 cut(s)	513, 894, 1536
TscAI	CASTG	4 cut(s)	25, 830, 838, 1203
TseFI	GTSAC	2 cut(s)	266, 1519
TseI	GCWGC	7 cut(s)	15, 248, 335, 455, 566, 1040, 1369
Tsp45I	GTSAC	2 cut(s)	266, 1519
TspDTI	ATGAA	9 cut(s)	17, 330, 408, 441, 692, 741, 800, 866, 1252
TspGWI	ACGGA	1 cut(s)	1481
TspRI	CASTG	4 cut(s)	25, 830, 838, 1203
Tth111I	GACNNNGTC	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	1199
VpaK11BI	GGWCC	2 cut(s)	521, 1314
XagI	CCTNNNNNAGG	1 cut(s)	1571
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	4 cut(s)	33, 1218, 1584, 1588
ZrmI	AGTACT	1 cut(s)	1382
Zsp2I	ATGCAT	1 cut(s)	1324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.