Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Reverse (-)

60426495 .. 60426887

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG406900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGTGATGATGAGCCTCGCAAGCGTCAGCTATTCGAGATCTTGCAAGGCCATGCCGAGTTCAGCCTCGAGAGGCTTCACAAGTGTGCCGAGAGCGAACTGCAGCAGTTTCTTGTCTGTGGTGATAACAATGACCACTTGCTGAAAATTTACGGGGATTTTAGAAAGAGACTCATAAATCTGACAAAGGTGACTGGAGCTTATATTGAGAAGCTGGCTAGTGCACTGGAGGAGGGCCTTCCTGAGACGTGCCCCTATGACGAGGCTAGTTGGACCTGGACCAGTGTACTTATATCAATGTGGGGACTGCCATCACCTGTGACGTGTGTAATATGGAACGTAATGGTTGGTGTTGCGACCTCTGTACTTATCGGAATCCAGCCTCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

4.96

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	2 cut(s)	288, 366
AflIII	ACRYGT	1 cut(s)	323
AjiI	CACGTC	2 cut(s)	249, 324
AjnI	CCWGG	1 cut(s)	275
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	31, 200, 214
AluI	AGCT	3 cut(s)	31, 200, 214
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	163, 239
Alw44I	GTGCAC	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	49, 235
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	235, 273, 279
AsuHPI	GGTGA	3 cut(s)	134, 202, 306
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	273, 279
BaeGI	GKGCMC	2 cut(s)	226, 254
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	163, 239
BfaI	CTAG	2 cut(s)	219, 267
BfmI	CTRYAG	1 cut(s)	101
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	2 cut(s)	273, 279
BmeT110I	CYCGRG	1 cut(s)	68
BmgBI	CACGTC	2 cut(s)	249, 324
BmgT120I	GGNCC	3 cut(s)	235, 273, 279
BmrFI	CCNGG	1 cut(s)	277
BpmI	CTGGAG	2 cut(s)	216, 248
Bse1I	ACTGG	3 cut(s)	199, 231, 282
BseBI	CCWGG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	199, 231, 282
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	2 cut(s)	226, 254
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	51, 237
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	163, 239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	51, 237
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	226, 254
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	51, 237
BspCNI	CTCAG	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	199, 231, 282
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	23, 216
BstDEI	CTNAG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	163, 239
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	101
BstSLI	GKGCMC	2 cut(s)	226, 254
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	51, 237
BtrI	CACGTC	2 cut(s)	249, 324
BtsIMutI	CAGTG	2 cut(s)	224, 289
Cac8I	GCNNGC	2 cut(s)	23, 216
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr13I	GGNCC	3 cut(s)	235, 273, 279
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	287, 365
CviAII	CATG	2 cut(s)	53, 390
CviQI	GTAC	2 cut(s)	287, 365
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	273, 279
Eco88I	CYCGRG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	56, 393
FaiI	YATR	7 cut(s)	54, 176, 204, 258, 293, 334, 391
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	52, 389
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	2 cut(s)	219, 267
GluI	GCNGC	1 cut(s)	104
GsuI	CTGGAG	2 cut(s)	216, 248
HaeIII	GGCC	2 cut(s)	51, 237
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	56, 393
HinfI	GANTC	2 cut(s)	171, 375
HphI	GGTGA	3 cut(s)	134, 202, 306
Hpy166II	GTNNAC	2 cut(s)	224, 287
Hpy188I	TCNGA	2 cut(s)	183, 374
Hpy188III	TCNNGA	3 cut(s)	37, 70, 242
Hpy8I	GTNNAC	2 cut(s)	224, 287
HpyAV	CCTTC	1 cut(s)	248
HpyCH4IV	ACGT	3 cut(s)	248, 323, 339
HpyCH4V	TGCA	3 cut(s)	46, 103, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	3 cut(s)	248, 323, 339
Hsp92II	CATG	2 cut(s)	56, 393
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	8 cut(s)	180, 200, 212, 255, 262, 289, 295, 330
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	219, 267
MaeII	ACGT	3 cut(s)	248, 323, 339
MaeIII	GTNAC	2 cut(s)	190, 319
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	226, 254
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	27, 66, 77, 223, 226, 256, 370, 393
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	2 cut(s)	56, 393
NmeAIII	GCCGAG	2 cut(s)	82, 115
NmuCI	GTSAC	2 cut(s)	190, 319
OliI	CACNNNNGTG	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspPI	GGNCC	3 cut(s)	235, 273, 279
PstI	CTGCAG	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	2 cut(s)	288, 366
RsaNI	GTAC	2 cut(s)	287, 365
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	3 cut(s)	235, 273, 279
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	226, 254
SfcI	CTRYAG	1 cut(s)	101
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	273, 279
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	219, 267
StyD4I	CCNGG	1 cut(s)	275
TaiI	ACGT	3 cut(s)	251, 326, 342
TaqI	TCGA	2 cut(s)	36, 69
TasI	AATT	1 cut(s)	147
TatI	WGTACW	2 cut(s)	286, 364
TfiI	GAWTC	1 cut(s)	375
TscAI	CASTG	2 cut(s)	231, 289
TseFI	GTSAC	2 cut(s)	190, 319
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	2 cut(s)	190, 319
TspRI	CASTG	2 cut(s)	231, 289
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	2 cut(s)	273, 279
XapI	RAATTY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	2 cut(s)	219, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.