Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Reverse (-)

59489896 .. 59490327

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTTATGGCTACTACATGCATGAGTGATGATGAGCCTCGCAAGCGTCAGCTATTCGAGATCTTGCAAGGCCATGCCGAGTTCAGCCTCGAGAGGCTTCACAAGTGTGCCGAGAGCGAACTGCAGCAGTTTCTTGTCTGTGGTGATAACAATGACCACTTGCTGAAAATTTACGGGGATTTTAGAAAGAGACTCATAAACCTGACAAAGGTGACTGGAACTTATTTTAAGAAGCTGGCTAGTGCACTGGAGGAGGGCCTTCCTGAGATAGGGGCTAGTTGGACCTGCGACCAGTGTACTTATATCAATGTGGGGACTGCCATCACCTGTGACGTGTGTAATACGGAACGTTATAGTTGGTGTTGCGACCTCTGTACTTATCGGAATCCAGCCTCTGCCATGAGTTGTGAGATGTGTTCTTATGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

143

Amino Acids

16.27

Weight (kDa)

5.07

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	2 cut(s)	298, 376
AfiI	CCNNNNNNNGG	2 cut(s)	208, 269
AflIII	ACRYGT	1 cut(s)	333
AjiI	CACGTC	1 cut(s)	334
AleI	CACNNNNGTG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	52, 235
AluI	AGCT	2 cut(s)	52, 235
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	243
AlwNI	CAGNNNCTG	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	70, 256
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	256, 282
AsuHPI	GGTGA	3 cut(s)	155, 223, 316
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	240, 276
BfmI	CTRYAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	256, 282
BpmI	CTGGAG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 269
Bse1I	ACTGG	3 cut(s)	220, 252, 292
BseLI	CCNNNNNNNGG	2 cut(s)	208, 269
BseMII	CTCAG	2 cut(s)	255, 417
BseNI	ACTGG	3 cut(s)	220, 252, 292
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	2 cut(s)	72, 258
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	208, 269
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	72, 258
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	60
BspANI	GGCC	2 cut(s)	72, 258
BspCNI	CTCAG	2 cut(s)	256, 418
BspMAI	CTGCAG	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	220, 252, 292
BssMI	GATC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	44, 237
BstDEI	CTNAG	2 cut(s)	264, 426
BstENI	CCTNNNNNAGG	2 cut(s)	206, 267
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	72, 258
BtrI	CACGTC	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	245, 299
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	44, 237
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	256, 282
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	297, 375
CviAII	CATG	4 cut(s)	18, 22, 74, 400
CviQI	GTAC	2 cut(s)	297, 375
DdeI	CTNAG	2 cut(s)	264, 426
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	2 cut(s)	206, 267
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	4 cut(s)	21, 25, 77, 403
FaiI	YATR	9 cut(s)	8, 19, 23, 75, 197, 303, 354, 401, 423
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	4 cut(s)	17, 21, 73, 399
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	2 cut(s)	240, 276
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	72, 258
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	21, 25, 77, 403
HinfI	GANTC	2 cut(s)	192, 385
HphI	GGTGA	3 cut(s)	155, 223, 316
Hpy166II	GTNNAC	2 cut(s)	245, 297
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	3 cut(s)	58, 91, 263
Hpy8I	GTNNAC	2 cut(s)	245, 297
HpyAV	CCTTC	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	333, 349
HpyCH4V	TGCA	4 cut(s)	21, 67, 124, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	264, 426
HpySE526I	ACGT	2 cut(s)	333, 349
Hsp92II	CATG	4 cut(s)	21, 25, 77, 403
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	9 cut(s)	201, 215, 221, 233, 276, 298, 305, 340, 402
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	240, 276
MaeII	ACGT	2 cut(s)	333, 349
MaeIII	GTNAC	2 cut(s)	211, 329
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	7 cut(s)	48, 87, 98, 244, 247, 380, 403
Mph1103I	ATGCAT	1 cut(s)	23
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	4 cut(s)	21, 25, 77, 403
NmeAIII	GCCGAG	2 cut(s)	103, 136
NmuCI	GTSAC	2 cut(s)	211, 329
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	1 cut(s)	21
OliI	CACNNNNGTG	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp1406I	AACGTT	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	256, 282
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	2 cut(s)	298, 376
RsaNI	GTAC	2 cut(s)	297, 375
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	256, 282
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	9 cut(s)	54, 204, 213, 237, 287, 329, 336, 352, 372
SfcI	CTRYAG	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	282
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	240, 276
TaiI	ACGT	2 cut(s)	336, 352
TaqI	TCGA	2 cut(s)	57, 90
TasI	AATT	1 cut(s)	168
TatI	WGTACW	2 cut(s)	296, 374
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	252, 299
TseFI	GTSAC	2 cut(s)	211, 329
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	2 cut(s)	211, 329
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	252, 299
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	282
XagI	CCTNNNNNAGG	2 cut(s)	206, 267
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	2 cut(s)	240, 276
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.