E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UBA_ARI1 | PF21235 | 78 - 117 | 9.2e-11 | E3 ubiquitin-protein ligase ARIH1, UBA-like domain |
| IBR | PF01485 | 215 - 278 | 1.6e-16 | IBR domain, a half RING-finger domain |
| IBR_1 | PF22191 | 301 - 342 | 9e-12 | IBR domain |
| IBR_2 | PF22605 | 301 - 340 | 2.1e-09 | IBR domain |
| Ariadne | PF19422 | 378 - 525 | 2.4e-06 | Ariadne domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 734 |
| Acc16I | TGCGCA | 1 cut(s) | 885 |
| Acc36I | ACCTGC | 3 cut(s) | 734, 972, 1300 |
| AccB1I | GGYRCC | 1 cut(s) | 702 |
| AccI | GTMKAC | 1 cut(s) | 1016 |
| AccII | CGCG | 1 cut(s) | 1400 |
| AciI | CCGC | 5 cut(s) | 288, 492, 599, 1236, 1400 |
| AclWI | GGATC | 3 cut(s) | 72, 182, 472 |
| AcsI | RAATTY | 3 cut(s) | 734, 813, 989 |
| AcuI | CTGAAG | 2 cut(s) | 1244, 1385 |
| AfaI | GTAC | 3 cut(s) | 725, 785, 1340 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 238, 507, 712 |
| AflIII | ACRYGT | 1 cut(s) | 557 |
| AgsI | TTSAA | 8 cut(s) | 83, 214, 316, 680, 739, 859, 1091, 1301 |
| AjiI | CACGTC | 1 cut(s) | 558 |
| AjnI | CCWGG | 2 cut(s) | 1410, 1485 |
| AleI | CACNNNNGTG | 1 cut(s) | 1428 |
| AluBI | AGCT | 8 cut(s) | 759, 1094, 1231, 1258, 1264, 1375, 1504, 1546 |
| AluI | AGCT | 8 cut(s) | 759, 1094, 1231, 1258, 1264, 1375, 1504, 1546 |
| Alw21I | GWGCWC | 2 cut(s) | 1217, 1386 |
| Alw26I | GTCTC | 2 cut(s) | 21, 186 |
| AlwI | GGATC | 3 cut(s) | 72, 182, 472 |
| Ama87I | CYCGRG | 2 cut(s) | 1007, 1349 |
| AoxI | GGCC | 1 cut(s) | 1393 |
| ApeKI | GCWGC | 5 cut(s) | 48, 290, 596, 1032, 1288 |
| ApoI | RAATTY | 3 cut(s) | 734, 813, 989 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 351, 383 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 225 |
| AspLEI | GCGC | 2 cut(s) | 687, 886 |
| AspS9I | GGNCC | 3 cut(s) | 551, 605, 1469 |
| AsuHPI | GGTGA | 3 cut(s) | 809, 1070, 1534 |
| AsuII | TTCGAA | 1 cut(s) | 1175 |
| AvaI | CYCGRG | 2 cut(s) | 1007, 1349 |
| AvaII | GGWCC | 3 cut(s) | 551, 605, 1469 |
| BaeGI | GKGCMC | 1 cut(s) | 707 |
| BanI | GGYRCC | 1 cut(s) | 702 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 641, 673 |
| BbsI | GAAGAC | 2 cut(s) | 96, 135 |
| Bbv12I | GWGCWC | 2 cut(s) | 1217, 1386 |
| BbvI | GCAGC | 5 cut(s) | 60, 277, 608, 1019, 1300 |
| BccI | CCATC | 3 cut(s) | 420, 1149, 1314 |
| BciT130I | CCWGG | 2 cut(s) | 1412, 1487 |
| BciVI | GTATCC | 1 cut(s) | 885 |
| BclI | TGATCA | 1 cut(s) | 451 |
| BcoDI | GTCTC | 2 cut(s) | 21, 186 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfuAI | ACCTGC | 3 cut(s) | 734, 972, 1300 |
| BfuI | GTATCC | 1 cut(s) | 885 |
| BglII | AGATCT | 1 cut(s) | 668 |
| BisI | GCNGC | 6 cut(s) | 49, 291, 597, 1033, 1236, 1289 |
| BlsI | GCNGC | 6 cut(s) | 50, 292, 598, 1034, 1237, 1290 |
| Bme1390I | CCNGG | 2 cut(s) | 1412, 1487 |
| Bme18I | GGWCC | 3 cut(s) | 551, 605, 1469 |
| BmeT110I | CYCGRG | 2 cut(s) | 1007, 1349 |
| BmgBI | CACGTC | 1 cut(s) | 558 |
| BmgT120I | GGNCC | 3 cut(s) | 551, 605, 1469 |
| BmiI | GGNNCC | 4 cut(s) | 395, 552, 704, 751 |
| BmrFI | CCNGG | 2 cut(s) | 1412, 1487 |
| BmsI | GCATC | 2 cut(s) | 555, 1019 |
| BpiI | GAAGAC | 2 cut(s) | 96, 135 |
| BpmI | CTGGAG | 2 cut(s) | 340, 1433 |
| Bpu14I | TTCGAA | 1 cut(s) | 1175 |
| BpuEI | CTTGAG | 1 cut(s) | 1250 |
| Bsa29I | ATCGAT | 1 cut(s) | 67 |
| BsaAI | YACGTR | 1 cut(s) | 1126 |
| BsaBI | GATNNNNATC | 2 cut(s) | 192, 453 |
| BsaJI | CCNNGG | 2 cut(s) | 399, 946 |
| BsaWI | WCCGGW | 2 cut(s) | 607, 712 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 683, 713 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 238, 507, 712 |
| Bse1I | ACTGG | 4 cut(s) | 323, 1024, 1060, 1072 |
| Bse3DI | GCAATG | 1 cut(s) | 1042 |
| Bse8I | GATNNNNATC | 2 cut(s) | 192, 453 |
| BseBI | CCWGG | 2 cut(s) | 1412, 1487 |
| BseCI | ATCGAT | 1 cut(s) | 67 |
| BseDI | CCNNGG | 2 cut(s) | 399, 946 |
| BseGI | GGATG | 4 cut(s) | 109, 412, 478, 496 |
| BseJI | GATNNNNATC | 2 cut(s) | 192, 453 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 238, 507, 712 |
| BseMI | GCAATG | 1 cut(s) | 1042 |
| BseMII | CTCAG | 2 cut(s) | 560, 1425 |
| BseNI | ACTGG | 4 cut(s) | 323, 1024, 1060, 1072 |
| BseRI | GAGGAG | 2 cut(s) | 293, 356 |
| BseSI | GKGCMC | 1 cut(s) | 707 |
| BseXI | GCAGC | 5 cut(s) | 60, 277, 608, 1019, 1300 |
| BseYI | CCCAGC | 1 cut(s) | 1094 |
| BsgI | GTGCAG | 2 cut(s) | 693, 1229 |
| Bsh1236I | CGCG | 1 cut(s) | 1400 |
| BshFI | GGCC | 1 cut(s) | 1395 |
| BshNI | GGYRCC | 1 cut(s) | 702 |
| BshVI | ATCGAT | 1 cut(s) | 67 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1217, 1386 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1007, 1349 |
| BsiSI | CCGG | 2 cut(s) | 608, 713 |
| BslFI | GGGAC | 2 cut(s) | 561, 807 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 238, 507, 712 |
| BsmAI | GTCTC | 2 cut(s) | 21, 186 |
| BsmBI | CGTCTC | 1 cut(s) | 186 |
| BsmFI | GGGAC | 2 cut(s) | 561, 807 |
| BsmI | GAATGC | 1 cut(s) | 886 |
| BsnI | GGCC | 1 cut(s) | 1395 |
| BsoBI | CYCGRG | 2 cut(s) | 1007, 1349 |
| Bsp119I | TTCGAA | 1 cut(s) | 1175 |
| Bsp1286I | GDGCHC | 3 cut(s) | 707, 1217, 1386 |
| BspACI | CCGC | 5 cut(s) | 288, 492, 599, 1236, 1400 |
| BspANI | GGCC | 1 cut(s) | 1395 |
| BspCNI | CTCAG | 2 cut(s) | 561, 1426 |
| BspDI | ATCGAT | 1 cut(s) | 67 |
| BspFNI | CGCG | 1 cut(s) | 1400 |
| BspHI | TCATGA | 2 cut(s) | 184, 640 |
| BspLI | GGNNCC | 4 cut(s) | 395, 552, 704, 751 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspMI | ACCTGC | 3 cut(s) | 734, 972, 1300 |
| BspPI | GGATC | 3 cut(s) | 72, 182, 472 |
| BspT104I | TTCGAA | 1 cut(s) | 1175 |
| BspT107I | GGYRCC | 1 cut(s) | 702 |
| BsrDI | GCAATG | 1 cut(s) | 1042 |
| BsrI | ACTGG | 4 cut(s) | 323, 1024, 1060, 1072 |
| BssECI | CCNNGG | 2 cut(s) | 399, 946 |
| BssNAI | GTATAC | 1 cut(s) | 1017 |
| BssT1I | CCWWGG | 1 cut(s) | 946 |
| Bst1107I | GTATAC | 1 cut(s) | 1017 |
| Bst2UI | CCWGG | 2 cut(s) | 1412, 1487 |
| Bst4CI | ACNGT | 4 cut(s) | 259, 585, 821, 841 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1315 |
| BstBAI | YACGTR | 1 cut(s) | 1126 |
| BstBI | TTCGAA | 1 cut(s) | 1175 |
| BstC8I | GCNNGC | 2 cut(s) | 295, 1233 |
| BstDEI | CTNAG | 2 cut(s) | 569, 1434 |
| BstDSI | CCRYGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 4 cut(s) | 109, 412, 478, 496 |
| BstFNI | CGCG | 1 cut(s) | 1400 |
| BstHHI | GCGC | 2 cut(s) | 687, 886 |
| BstMAI | GTCTC | 2 cut(s) | 21, 186 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 336, 801, 883, 921, 1002, 1315, 1381 |
| BstNI | CCWGG | 2 cut(s) | 1412, 1487 |
| BstNSI | RCATGY | 1 cut(s) | 297 |
| BstSCI | CCNGG | 2 cut(s) | 1410, 1485 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstSLI | GKGCMC | 1 cut(s) | 707 |
| BstUI | CGCG | 1 cut(s) | 1400 |
| BstV1I | GCAGC | 5 cut(s) | 60, 277, 608, 1019, 1300 |
| BstV2I | GAAGAC | 2 cut(s) | 96, 135 |
| BstX2I | RGATCY | 1 cut(s) | 668 |
| BstYI | RGATCY | 1 cut(s) | 668 |
| BstZ17I | GTATAC | 1 cut(s) | 1017 |
| Bsu15I | ATCGAT | 1 cut(s) | 67 |
| BsuI | GTATCC | 1 cut(s) | 885 |
| BsuRI | GGCC | 1 cut(s) | 1395 |
| BsuTUI | ATCGAT | 1 cut(s) | 67 |
| BtgI | CCRYGG | 1 cut(s) | 399 |
| BtgZI | GCGATG | 2 cut(s) | 66, 1333 |
| BtrI | CACGTC | 1 cut(s) | 558 |
| BtsCI | GGATG | 4 cut(s) | 109, 412, 478, 496 |
| BtsI | GCAGTG | 3 cut(s) | 105, 811, 893 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 811, 893 |
| BveI | ACCTGC | 3 cut(s) | 734, 972, 1300 |
| Cac8I | GCNNGC | 2 cut(s) | 295, 1233 |
| CciI | TCATGA | 2 cut(s) | 184, 640 |
| CfoI | GCGC | 2 cut(s) | 687, 886 |
| Cfr13I | GGNCC | 3 cut(s) | 551, 605, 1469 |
| ClaI | ATCGAT | 1 cut(s) | 67 |
| CseI | GACGC | 2 cut(s) | 104, 313 |
| Csp6I | GTAC | 3 cut(s) | 724, 784, 1339 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 727, 762 |
| CviAII | CATG | 3 cut(s) | 185, 294, 641 |
| CviQI | GTAC | 3 cut(s) | 724, 784, 1339 |
| DdeI | CTNAG | 2 cut(s) | 569, 1434 |
| DraI | TTTAAA | 1 cut(s) | 532 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 946 |
| Eco32I | GATATC | 1 cut(s) | 250 |
| Eco47I | GGWCC | 3 cut(s) | 551, 605, 1469 |
| Eco57I | CTGAAG | 2 cut(s) | 1244, 1385 |
| Eco88I | CYCGRG | 2 cut(s) | 1007, 1349 |
| EcoRII | CCWGG | 2 cut(s) | 1410, 1485 |
| EcoRV | GATATC | 1 cut(s) | 250 |
| EcoT14I | CCWWGG | 1 cut(s) | 946 |
| EcoT22I | ATGCAT | 1 cut(s) | 1333 |
| ErhI | CCWWGG | 1 cut(s) | 946 |
| Esp3I | CGTCTC | 1 cut(s) | 186 |
| FaeI | CATG | 3 cut(s) | 188, 297, 644 |
| FaqI | GGGAC | 2 cut(s) | 561, 807 |
| FatI | CATG | 3 cut(s) | 184, 293, 640 |
| FauNDI | CATATG | 1 cut(s) | 960 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| FblI | GTMKAC | 1 cut(s) | 1016 |
| Fnu4HI | GCNGC | 6 cut(s) | 49, 291, 597, 1033, 1236, 1289 |
| FokI | GGATG | 4 cut(s) | 116, 399, 483, 485 |
| Fsp4HI | GCNGC | 6 cut(s) | 49, 291, 597, 1033, 1236, 1289 |
| FspI | TGCGCA | 1 cut(s) | 885 |
| GlaI | GCGC | 2 cut(s) | 686, 885 |
| GluI | GCNGC | 6 cut(s) | 49, 291, 597, 1033, 1236, 1289 |
| GsaI | CCCAGC | 1 cut(s) | 1098 |
| GsuI | CTGGAG | 2 cut(s) | 340, 1433 |
| HaeIII | GGCC | 1 cut(s) | 1395 |
| HapII | CCGG | 2 cut(s) | 608, 713 |
| HgaI | GACGC | 2 cut(s) | 104, 313 |
| HhaI | GCGC | 2 cut(s) | 687, 886 |
| Hin1II | CATG | 3 cut(s) | 188, 297, 644 |
| Hin6I | GCGC | 2 cut(s) | 685, 884 |
| HinP1I | GCGC | 2 cut(s) | 685, 884 |
| HindIII | AAGCTT | 1 cut(s) | 1229 |
| HinfI | GANTC | 7 cut(s) | 59, 176, 226, 366, 872, 1369, 1594 |
| HpaII | CCGG | 2 cut(s) | 608, 713 |
| HphI | GGTGA | 3 cut(s) | 809, 1070, 1534 |
| Hpy166II | GTNNAC | 2 cut(s) | 829, 1017 |
| Hpy188I | TCNGA | 6 cut(s) | 64, 73, 371, 555, 1255, 1576 |
| Hpy188III | TCNNGA | 8 cut(s) | 185, 509, 578, 641, 937, 1009, 1349, 1605 |
| Hpy8I | GTNNAC | 2 cut(s) | 829, 1017 |
| Hpy99I | CGWCG | 4 cut(s) | 98, 329, 359, 559 |
| HpyAV | CCTTC | 4 cut(s) | 370, 463, 667, 674 |
| HpyCH4III | ACNGT | 4 cut(s) | 259, 585, 821, 841 |
| HpyCH4IV | ACGT | 5 cut(s) | 557, 675, 765, 1125, 1325 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 336, 801, 883, 921, 1002, 1315, 1381 |
| HpyF3I | CTNAG | 2 cut(s) | 569, 1434 |
| HpySE526I | ACGT | 5 cut(s) | 557, 675, 765, 1125, 1325 |
| Hsp92II | CATG | 3 cut(s) | 188, 297, 644 |
| HspAI | GCGC | 2 cut(s) | 685, 884 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| LmnI | GCTCC | 2 cut(s) | 321, 1255 |
| Lsp1109I | GCAGC | 5 cut(s) | 60, 277, 608, 1019, 1300 |
| LweI | GCATC | 2 cut(s) | 555, 1019 |
| MaeII | ACGT | 5 cut(s) | 557, 675, 765, 1125, 1325 |
| MaeIII | GTNAC | 1 cut(s) | 1522 |
| MflI | RGATCY | 1 cut(s) | 668 |
| MhlI | GDGCHC | 3 cut(s) | 707, 1217, 1386 |
| MluCI | AATT | 6 cut(s) | 734, 799, 813, 847, 989, 1577 |
| MlyI | GAGTC | 2 cut(s) | 375, 866 |
| MmeI | TCCRAC | 4 cut(s) | 578, 583, 1455, 1539 |
| Mph1103I | ATGCAT | 1 cut(s) | 1333 |
| MroXI | GAANNNNTTC | 1 cut(s) | 225 |
| MseI | TTAA | 3 cut(s) | 531, 614, 971 |
| MslI | CAYNNNNRTG | 3 cut(s) | 459, 1146, 1428 |
| MspA1I | CMGCKG | 2 cut(s) | 290, 599 |
| MspI | CCGG | 2 cut(s) | 608, 713 |
| MspR9I | CCNGG | 2 cut(s) | 1412, 1487 |
| Mva1269I | GAATGC | 1 cut(s) | 886 |
| MvaI | CCWGG | 2 cut(s) | 1412, 1487 |
| MvnI | CGCG | 1 cut(s) | 1400 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 336, 801, 883, 921, 1002, 1315, 1381 |
| NdeI | CATATG | 1 cut(s) | 960 |
| NlaIII | CATG | 3 cut(s) | 188, 297, 644 |
| NlaIV | GGNNCC | 4 cut(s) | 395, 552, 704, 751 |
| NmuCI | GTSAC | 1 cut(s) | 1522 |
| NsbI | TGCGCA | 1 cut(s) | 885 |
| NsiI | ATGCAT | 1 cut(s) | 1333 |
| NspI | RCATGY | 1 cut(s) | 297 |
| NspV | TTCGAA | 1 cut(s) | 1175 |
| OliI | CACNNNNGTG | 1 cut(s) | 1428 |
| PaeI | GCATGC | 1 cut(s) | 297 |
| PaeR7I | CTCGAG | 1 cut(s) | 1007 |
| PagI | TCATGA | 2 cut(s) | 184, 640 |
| PaqCI | CACCTGC | 1 cut(s) | 734 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 144, 162 |
| PctI | GAATGC | 1 cut(s) | 886 |
| PdmI | GAANNNNTTC | 1 cut(s) | 225 |
| PfeI | GAWTC | 5 cut(s) | 59, 176, 226, 1369, 1594 |
| PfoI | TCCNGGA | 1 cut(s) | 1485 |
| PkrI | GCNGC | 6 cut(s) | 50, 292, 598, 1034, 1237, 1290 |
| PleI | GAGTC | 2 cut(s) | 374, 866 |
| PpsI | GAGTC | 2 cut(s) | 374, 866 |
| Ppu21I | YACGTR | 1 cut(s) | 1126 |
| Psp6I | CCWGG | 2 cut(s) | 1410, 1485 |
| PspFI | CCCAGC | 1 cut(s) | 1094 |
| PspGI | CCWGG | 2 cut(s) | 1410, 1485 |
| PspN4I | GGNNCC | 4 cut(s) | 395, 552, 704, 751 |
| PspPI | GGNCC | 3 cut(s) | 551, 605, 1469 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| PsuI | RGATCY | 1 cut(s) | 668 |
| RsaI | GTAC | 3 cut(s) | 725, 785, 1340 |
| RsaNI | GTAC | 3 cut(s) | 724, 784, 1339 |
| RseI | CAYNNNNRTG | 3 cut(s) | 459, 1146, 1428 |
| SaqAI | TTAA | 3 cut(s) | 531, 614, 971 |
| SatI | GCNGC | 6 cut(s) | 49, 291, 597, 1033, 1236, 1289 |
| Sau96I | GGNCC | 3 cut(s) | 551, 605, 1469 |
| SchI | GAGTC | 2 cut(s) | 375, 866 |
| ScrFI | CCNGG | 2 cut(s) | 1412, 1487 |
| SduI | GDGCHC | 3 cut(s) | 707, 1217, 1386 |
| SfaNI | GCATC | 2 cut(s) | 555, 1019 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| Sfr274I | CTCGAG | 1 cut(s) | 1007 |
| SfuI | TTCGAA | 1 cut(s) | 1175 |
| SinI | GGWCC | 3 cut(s) | 551, 605, 1469 |
| SlaI | CTCGAG | 1 cut(s) | 1007 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 459, 1146, 1428 |
| SmlI | CTYRAG | 2 cut(s) | 1007, 1265 |
| SmoI | CTYRAG | 2 cut(s) | 1007, 1265 |
| SphI | GCATGC | 1 cut(s) | 297 |
| Sse9I | AATT | 6 cut(s) | 734, 799, 813, 847, 989, 1577 |
| SsiI | CCGC | 5 cut(s) | 288, 492, 599, 1236, 1400 |
| StyD4I | CCNGG | 2 cut(s) | 1410, 1485 |
| StyI | CCWWGG | 1 cut(s) | 946 |
| TaaI | ACNGT | 4 cut(s) | 259, 585, 821, 841 |
| TaiI | ACGT | 5 cut(s) | 560, 678, 768, 1128, 1328 |
| TaqI | TCGA | 8 cut(s) | 67, 138, 467, 618, 936, 1008, 1175, 1380 |
| TasI | AATT | 6 cut(s) | 734, 799, 813, 847, 989, 1577 |
| TauI | GCSGC | 1 cut(s) | 1238 |
| TfiI | GAWTC | 5 cut(s) | 59, 176, 226, 1369, 1594 |
| Tru1I | TTAA | 3 cut(s) | 531, 614, 971 |
| Tru9I | TTAA | 3 cut(s) | 531, 614, 971 |
| TscAI | CASTG | 3 cut(s) | 105, 811, 893 |
| TseFI | GTSAC | 1 cut(s) | 1522 |
| TseI | GCWGC | 5 cut(s) | 48, 290, 596, 1032, 1288 |
| Tsp45I | GTSAC | 1 cut(s) | 1522 |
| TspDTI | ATGAA | 6 cut(s) | 69, 1002, 1164, 1241, 1371, 1460 |
| TspGWI | ACGGA | 4 cut(s) | 39, 1094, 1232, 1461 |
| TspRI | CASTG | 3 cut(s) | 105, 811, 893 |
| VpaK11BI | GGWCC | 3 cut(s) | 551, 605, 1469 |
| XapI | RAATTY | 3 cut(s) | 734, 813, 989 |
| XceI | RCATGY | 1 cut(s) | 297 |
| XhoI | CTCGAG | 1 cut(s) | 1007 |
| XmiI | GTMKAC | 1 cut(s) | 1016 |
| XmnI | GAANNNNTTC | 1 cut(s) | 225 |
| Zsp2I | ATGCAT | 1 cut(s) | 1333 |