Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000864

Physical Location & Seq

Genomic Coordinates Reverse (-)

59491034 .. 59491615

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG407700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGAACGATGACGACTACAGAACCGCAGATAGTGGCGATGAAGAATCACTGAGCTACAGCGCGGGCGATGATGACTATCTTCCAGAAGATGAACAAGTCGATGACTTTGGTGAGAGTCGATGTCTTTATATTCTTCTGAAAGAAGAAGAAATTGCAAAACTTCAGCAGGATTCTATTTCAGAAGTGTCTACCGTCCTTTCCATATCCAAATCTGATGCATGCTTACTACTCCCTCACTTTCATTGGAGTGTTGAGGATCTACAGGATGAATGGTTTGCTGATGAAGATAAAGTCCAAGACAAGGCAGGCTTGTTGAAGAAACCAATAGTCGAACATAATGCTAGCCAAAATCTAACAACTACTTGCGAAATATGCTTCGAGGAGTACTACTACTATTCATTAGATGCATCATCCAGGAGTAATAGTATTCTCACAGCCTCTTGTGGACATCCTTATTGTCGAGATTGCTGGGCAGGTTATATAAGCACGTCAATCGGTGAGGGTGGTCCTGCCTGTTTGATGCTGAGCCGCTCAGGTGTCCTCAACCGAATGCTGCACTACACGTTGGTCATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

193

Amino Acids

21.75

Weight (kDa)

4.2

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARIH2_N	PF26000	50 - 89	3.4e-07	E3 ubiquitin-protein ligase ARIH2, N-terminal UBA domain
UBA_ARI1	PF21235	55 - 93	1.5e-12	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04620 FvH4_2g38770 FvH4_2g38770 FvH4_2g38770 FvH4_2g40460 FvH4_2g40470
malus_domestica	MD08G1038100.v1.1
pyrus_communis	pycom08g03020
rosa_chinensis	RchiOBHm_Chr3g0469221 RchiOBHm_Chr6g0254221 RchiOBHm_Chr6g0300261 RchiOBHm_Chr6g0300271 RchiOBHm_Chr6g0302541
rosa_laevigata	RLG00000011163 RLG00000011352 RLG00000011353 RLG00000014933 RLG00000024363
rosa_multiflora	Rmu_co8320635.1_g000001 Rmu_co8404089.1_g000001 Rmu_co8438357.1_g000001 Rmu_sc0000010.1_g000012 Rmu_sc0000890.1_g000011 Rmu_sc0001670.1_g000026 Rmu_sc0001670.1_g000027 Rmu_sc0001670.1_g000028 Rmu_sc0003035.1_g000009 Rmu_sc0003711.1_g000015 Rmu_sc0008826.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165630 Rroxscaffold_7G00167950 Rroxscaffold_7G00167970
rosa_rugosa	Rorug03G0100300 Rorug03G0100300 Rorug05G0551100 Rorug06G0294500 Rorug06G0294600 Rorug06G0314800 Rorug06G0314900
rosa_samantha	Rh3AG149600 Rh3BG172900 Rh3CG164300 Rh3DG202700 Rh6AG067300 Rh6AG406800 Rh6AG406900 Rh6AG407000 Rh6AG407100 Rh6AG428200 Rh6BG060400 Rh6BG414600 Rh6BG414700 Rh6BG474500 Rh6CG060300 Rh6CG421800 Rh6CG421900 Rh6CG440300 Rh6DG057300 Rh6DG407400 Rh6DG407500 Rh6DG407600 Rh6DG407700 Rh6DG427300
rosa_wichuraiana	Rw3G014120 Rw6G005910 Rw6G035600 Rw6G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	65
AciI	CCGC	3 cut(s)	27, 65, 532
AclWI	GGATC	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AlwI	GGATC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	125, 512
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	543
BcgI	CGANNNNNNTGC	4 cut(s)	323, 357, 478, 512
BciT130I	CCWGG	1 cut(s)	418
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	3 cut(s)	19, 58, 263
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	532, 557
BlpI	GCTNAGC	1 cut(s)	527
BlsI	GCNGC	2 cut(s)	533, 558
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	4 cut(s)	208, 397, 419, 513
BmtI	GCTAGC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	535
Bpu1102I	GCTNAGC	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	274, 413, 451
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	44, 518, 549
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	543
BseYI	CCCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	558
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	527
BspACI	CCGC	3 cut(s)	27, 65, 532
BspCNI	CTCAG	3 cut(s)	45, 519, 548
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	573
BspMI	ACCTGC	1 cut(s)	467
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	534
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	67, 223, 310, 346
BstDEI	CTNAG	3 cut(s)	53, 527, 535
BstF5I	GGATG	3 cut(s)	274, 413, 451
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	3 cut(s)	19, 58, 263
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BtgZI	GCGATG	2 cut(s)	54, 84
BtrI	CACGTC	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	274, 413, 451
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	4 cut(s)	67, 223, 310, 346
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	222, 574
CviJI	RGCY	5 cut(s)	57, 312, 348, 440, 531
CviKI_1	RGCY	5 cut(s)	57, 312, 348, 440, 531
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	53, 527, 535
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	416
EcoT22I	ATGCAT	2 cut(s)	223, 412
FaeI	CATG	2 cut(s)	225, 577
FaiI	YATR	8 cut(s)	132, 206, 223, 339, 376, 483, 485, 575
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	2 cut(s)	221, 573
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	532, 557
FokI	GGATG	3 cut(s)	281, 400, 438
Fsp4HI	GCNGC	2 cut(s)	532, 557
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	2 cut(s)	532, 557
GsaI	CCCAGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	225, 577
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	3 cut(s)	47, 118, 173
HphI	GGTGA	2 cut(s)	125, 512
Hpy166II	GTNNAC	2 cut(s)	192, 449
Hpy188I	TCNGA	3 cut(s)	141, 184, 217
Hpy188III	TCNNGA	3 cut(s)	86, 464, 574
Hpy8I	GTNNAC	2 cut(s)	192, 449
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	2 cut(s)	491, 566
HpyCH4V	TGCA	4 cut(s)	158, 221, 410, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	3 cut(s)	53, 527, 535
HpySE526I	ACGT	2 cut(s)	491, 566
Hsp92II	CATG	2 cut(s)	225, 577
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	4 cut(s)	208, 397, 419, 513
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	491, 566
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	1 cut(s)	259
MboII	GAAGA	8 cut(s)	56, 74, 101, 128, 158, 161, 299, 331
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	246, 250, 376, 451, 496, 554
Mph1103I	ATGCAT	2 cut(s)	223, 412
MseI	TTAA	1 cut(s)	580
MslI	CAYNNNNRTG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	418
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	375
NdeII	GATC	1 cut(s)	259
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	225, 577
NsiI	ATGCAT	2 cut(s)	223, 412
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PagI	TCATGA	1 cut(s)	573
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	47, 173
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	533, 558
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	580
SatI	GCNGC	2 cut(s)	532, 557
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	509
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	418
SetI	ASST	5 cut(s)	59, 481, 494, 541, 569
SfaNI	GCATC	4 cut(s)	208, 397, 419, 513
SfcI	CTRYAG	3 cut(s)	19, 58, 263
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	3 cut(s)	27, 65, 532
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	2 cut(s)	494, 569
TaqI	TCGA	5 cut(s)	102, 121, 333, 381, 463
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	2 cut(s)	47, 173
Tru1I	TTAA	1 cut(s)	580
Tru9I	TTAA	1 cut(s)	580
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	556
TspDTI	ATGAA	6 cut(s)	57, 108, 233, 285, 300, 390
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	509
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	389
Zsp2I	ATGCAT	2 cut(s)	223, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.