RLG00000014933

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000864
Physical Location & Seq
Forward (+)
59660674 .. 59662579
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014933

Sequence Viewer

Length: 1188 bp
ATGGATGATATGCACCGTGAAAGTGATGACGGTTATGAATCCGTAGAGAGTGGCGATGAAGAAGCAATGAACTACGATGAGGATCTTCTAGTAGATGATAAAGTCGATGACTTGGTCAAAGTAGGTTATATTAGCACAACAATATGTGACGGTGGTCCGGCGTGTTTGAGGCTAAGGTGTCCTGAATCATCATGTAGTGCAGCAGTTGGTCCTGATTTGATCCAAAAGATGTTGTTGAACTCAAACGGAGAAGCTGAGCTTGGCAAGTACAAGACCTATCTGTTAAGATCTTACGTCAAAGATCGGAGGAAGATCAAGTGGTGTCCTGCCCCGGATTGTAACTGCGCAATTCAGTTTGATACTTTGGGTGGAATGGTGTCATATGATGTTTCATGTCTTTGCTCGCATAGCTATTGCTGGAATTGCTGGAATTGTACTGAGGAGAATCATCGTCCTGTGGATTGCGAAACTGTGGGGAAGTGGATTTTGAAGAATAAGGATGATTCTCAAAATGCGCAGTGGATACTGGTTAATTCTAAGCCTTGCCCCCAATGCAAAAGACCAATTGAGAAGAACCAAGCAGCAGTTGATAACAATCCCGAGACATCTAGGAATATGAATGAGACGGCAAGGAAGAGGGCAAAGAAGTATTCAGAGAGATATATTCATTACTATGAACGCTGGGAAAACAATGGAAGATCAAAGGGAAAAGCTATTGAGGATTTTGATAAGGTGAAGAACGAGCACATTAAGCAACTTGGAGAGATACAGGGAAACACAAAAGAGCATGAATATGATTTTATCATAGAGGCCTGGCAACAGATTATTGAGTGCAGGAAAGTATCGCGCTGGACTTATGCATATGGCCACTACATGCCTCAGGATGCTTATGCGAAGAAGCACCTATTCGAGTGCTTGCGAGGCCATGCTGAGTTCAGCCTGGAAAGGCTTCACAATTGCGCTGAGAGCGAACTGCAACAGTTTCTGGTCTTATCACTATCAGCAGCTTCTGACACTTTCAAAGAGTTTAAAACAAAACTCGTGGGCCTGACAAAGGTGACCGGAACTTATTTCAAAAGGTTGGTTACTGCATTGGAGGAGGGCTTCCGGAGACGAGCCGATATGGAGCTGGGGCTGCTTATGAGGAGACTGATTGGACATGTGACCAATGTACCTATATCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RanBP

Protein Analysis

396

Amino Acids

45.57

Weight (kDa)

6.05

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 89 - 155 1.1e-09 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 346, 516
AccII CGCG 1 cut(s) 847
AccIII TCCGGA 1 cut(s) 1107
AclWI GGATC 2 cut(s) 90, 214
AcoI YGGCCR 1 cut(s) 865
AfaI GTAC 3 cut(s) 269, 436, 1173
AfiI CCNNNNNNNGG 1 cut(s) 1054
AflIII ACRYGT 1 cut(s) 1159
AgsI TTSAA 4 cut(s) 238, 490, 1021, 1075
AjnI CCWGG 2 cut(s) 812, 939
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 6 cut(s) 254, 259, 411, 713, 1007, 1129
AluI AGCT 6 cut(s) 254, 259, 411, 713, 1007, 1129
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 4 cut(s) 596, 617, 1105, 1141
AlwI GGATC 2 cut(s) 90, 214
AlwNI CAGNNNCTG 2 cut(s) 985, 1010
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 1107
AoxI GGCC 4 cut(s) 810, 865, 922, 1045
ApeKI GCWGC 4 cut(s) 200, 581, 1004, 1135
Asp700I GAANNNNTTC 1 cut(s) 948
AspLEI GCGC 4 cut(s) 347, 517, 849, 962
AspS9I GGNCC 3 cut(s) 155, 209, 1045
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 745, 1069
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 2 cut(s) 155, 209
AxyI CCTNAGG 1 cut(s) 879
BaeI ACNNNNGTAYC 2 cut(s) 1155, 1188
BalI TGGCCA 1 cut(s) 867
BauI CACGAG 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 4 cut(s) 212, 593, 1016, 1122
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 2 cut(s) 814, 941
BciVI GTATCC 1 cut(s) 516
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 4 cut(s) 596, 617, 1105, 1141
BfaI CTAG 2 cut(s) 89, 609
BfuI GTATCC 1 cut(s) 516
BglII AGATCT 1 cut(s) 287
BisI GCNGC 4 cut(s) 201, 582, 1005, 1136
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 4 cut(s) 202, 583, 1006, 1137
Bme1390I CCNGG 3 cut(s) 332, 814, 941
Bme18I GGWCC 2 cut(s) 155, 209
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 155, 209, 1045
BmrFI CCNGG 3 cut(s) 332, 814, 941
BmsI GCATC 1 cut(s) 874
BoxI GACNNNNGTC 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 81, 594
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 2 cut(s) 1061, 1107
Bsc4I CCNNNNNNNGG 1 cut(s) 1054
Bse1I ACTGG 1 cut(s) 531
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 72
Bse8I GATNNNNATC 2 cut(s) 81, 594
BseAI TCCGGA 1 cut(s) 1107
BseBI CCWGG 2 cut(s) 814, 941
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 3 cut(s) 10, 505, 889
BseJI GATNNNNATC 2 cut(s) 81, 594
BseLI CCNNNNNNNGG 1 cut(s) 1054
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 5 cut(s) 246, 429, 893, 921, 954
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 3 cut(s) 455, 1112, 1159
BseXI GCAGC 4 cut(s) 212, 593, 1016, 1122
BseYI CCCAGC 2 cut(s) 681, 1129
BsgI GTGCAG 2 cut(s) 219, 853
Bsh1236I CGCG 1 cut(s) 847
BshFI GGCC 4 cut(s) 812, 867, 924, 1047
BsiHKAI GWGCWC 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 4 cut(s) 158, 332, 1062, 1108
BslI CCNNNNNNNGG 1 cut(s) 1054
BsmAI GTCTC 4 cut(s) 596, 617, 1105, 1141
BsmBI CGTCTC 2 cut(s) 617, 1105
BsnI GGCC 4 cut(s) 812, 867, 924, 1047
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 747
Bsp13I TCCGGA 1 cut(s) 1107
Bsp143I GATC 6 cut(s) 82, 219, 287, 301, 312, 698
Bsp1720I GCTNAGC 1 cut(s) 255
BspANI GGCC 4 cut(s) 812, 867, 924, 1047
BspCNI CTCAG 5 cut(s) 247, 430, 892, 922, 955
BspEI TCCGGA 1 cut(s) 1107
BspFNI CGCG 1 cut(s) 847
BspPI GGATC 2 cut(s) 90, 214
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 6 cut(s) 82, 219, 287, 301, 312, 698
BssSI CACGAG 1 cut(s) 1040
Bst2BI CACGAG 1 cut(s) 1040
Bst2UI CCWGG 2 cut(s) 814, 941
Bst4CI ACNGT 5 cut(s) 17, 32, 152, 472, 981
Bst6I CTCTTC 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 404, 917
BstDEI CTNAG 7 cut(s) 173, 255, 438, 537, 879, 930, 963
BstEII GGTNACC 1 cut(s) 1057
BstENI CCTNNNNNAGG 1 cut(s) 1052
BstF5I GGATG 3 cut(s) 10, 505, 889
BstFNI CGCG 1 cut(s) 847
BstHHI GCGC 4 cut(s) 347, 517, 849, 962
BstKTI GATC 6 cut(s) 85, 222, 290, 304, 315, 701
BstMAI GTCTC 4 cut(s) 596, 617, 1105, 1141
BstMBI GATC 6 cut(s) 82, 219, 287, 301, 312, 698
BstMWI GCNNNNNNNGC 7 cut(s) 408, 423, 552, 751, 921, 966, 1135
BstNI CCWGG 2 cut(s) 814, 941
BstNSI RCATGY 2 cut(s) 877, 1163
BstPAI GACNNNNGTC 1 cut(s) 153
BstPI GGTNACC 1 cut(s) 1057
BstSCI CCNGG 3 cut(s) 330, 812, 939
BstUI CGCG 1 cut(s) 847
BstV1I GCAGC 4 cut(s) 212, 593, 1016, 1122
BstX2I RGATCY 2 cut(s) 82, 287
BstYI RGATCY 2 cut(s) 82, 287
Bsu36I CCTNAGG 1 cut(s) 879
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 4 cut(s) 812, 867, 924, 1047
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 10, 505, 889
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 404, 917
CaiI CAGNNNCTG 2 cut(s) 985, 1010
CfoI GCGC 4 cut(s) 347, 517, 849, 962
Cfr13I GGNCC 3 cut(s) 155, 209, 1045
Csp6I GTAC 3 cut(s) 268, 435, 1172
CspCI CAANNNNNGTGG 2 cut(s) 1023, 1058
CviAII CATG 6 cut(s) 192, 393, 788, 874, 926, 1160
CviQI GTAC 3 cut(s) 268, 435, 1172
DdeI CTNAG 7 cut(s) 173, 255, 438, 537, 879, 930, 963
DpnI GATC 6 cut(s) 84, 221, 289, 303, 314, 700
DpnII GATC 6 cut(s) 82, 219, 287, 301, 312, 698
DraI TTTAAA 1 cut(s) 1030
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco147I AGGCCT 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 155, 209
Eco81I CCTNAGG 1 cut(s) 879
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 1057
EcoNI CCTNNNNNAGG 1 cut(s) 1052
EcoO65I GGTNACC 1 cut(s) 1057
EcoRII CCWGG 2 cut(s) 812, 939
EcoT22I ATGCAT 1 cut(s) 862
Esp3I CGTCTC 2 cut(s) 617, 1105
FaeI CATG 6 cut(s) 195, 396, 791, 877, 929, 1163
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 6 cut(s) 191, 392, 787, 873, 925, 1159
FauNDI CATATG 2 cut(s) 382, 862
Fnu4HI GCNGC 4 cut(s) 201, 582, 1005, 1136
FokI GGATG 3 cut(s) 17, 512, 896
Fsp4HI GCNGC 4 cut(s) 201, 582, 1005, 1136
FspBI CTAG 2 cut(s) 89, 609
FspI TGCGCA 2 cut(s) 346, 516
GlaI GCGC 4 cut(s) 346, 516, 848, 961
GluI GCNGC 4 cut(s) 201, 582, 1005, 1136
GsaI CCCAGC 2 cut(s) 685, 1133
HaeIII GGCC 4 cut(s) 812, 867, 924, 1047
HapII CCGG 4 cut(s) 158, 332, 1062, 1108
HhaI GCGC 4 cut(s) 347, 517, 849, 962
Hin1II CATG 6 cut(s) 195, 396, 791, 877, 929, 1163
Hin6I GCGC 4 cut(s) 345, 515, 847, 960
HinP1I GCGC 4 cut(s) 345, 515, 847, 960
HinfI GANTC 4 cut(s) 38, 185, 445, 503
HpaII CCGG 4 cut(s) 158, 332, 1062, 1108
HphI GGTGA 2 cut(s) 745, 1069
Hpy188I TCNGA 3 cut(s) 306, 655, 1012
Hpy188III TCNNGA 5 cut(s) 182, 212, 599, 881, 1108
HpyCH4III ACNGT 5 cut(s) 17, 32, 152, 472, 981
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 7 cut(s) 13, 200, 555, 834, 860, 976, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 408, 423, 552, 751, 921, 966, 1135
HpyF3I CTNAG 7 cut(s) 173, 255, 438, 537, 879, 930, 963
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 6 cut(s) 195, 396, 791, 877, 929, 1163
HspAI GCGC 4 cut(s) 345, 515, 847, 960
Kpn2I TCCGGA 1 cut(s) 1107
Kzo9I GATC 6 cut(s) 82, 219, 287, 301, 312, 698
LmnI GCTCC 1 cut(s) 1126
Lsp1109I GCAGC 4 cut(s) 212, 593, 1016, 1122
LweI GCATC 1 cut(s) 874
MaeI CTAG 2 cut(s) 89, 609
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 5 cut(s) 146, 338, 1057, 1084, 1162
MalI GATC 6 cut(s) 84, 221, 289, 303, 314, 700
MboI GATC 6 cut(s) 82, 219, 287, 301, 312, 698
MboII GAAGA 9 cut(s) 71, 77, 322, 502, 583, 646, 708, 748, 907
MfeI CAATTG 2 cut(s) 564, 955
MflI RGATCY 2 cut(s) 82, 287
MhlI GDGCHC 1 cut(s) 747
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 6 cut(s) 348, 421, 430, 532, 564, 955
MluNI TGGCCA 1 cut(s) 867
Mox20I TGGCCA 1 cut(s) 867
Mph1103I ATGCAT 1 cut(s) 862
MroI TCCGGA 1 cut(s) 1107
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 867
MseI TTAA 4 cut(s) 284, 531, 750, 1029
MslI CAYNNNNRTG 2 cut(s) 672, 792
Msp20I TGGCCA 1 cut(s) 867
MspI CCGG 4 cut(s) 158, 332, 1062, 1108
MspR9I CCNGG 3 cut(s) 332, 814, 941
MunI CAATTG 2 cut(s) 564, 955
MvaI CCWGG 2 cut(s) 814, 941
MvnI CGCG 1 cut(s) 847
MwoI GCNNNNNNNGC 7 cut(s) 408, 423, 552, 751, 921, 966, 1135
NciI CCSGG 1 cut(s) 332
NdeI CATATG 2 cut(s) 382, 862
NdeII GATC 6 cut(s) 82, 219, 287, 301, 312, 698
NlaIII CATG 6 cut(s) 195, 396, 791, 877, 929, 1163
NmuCI GTSAC 3 cut(s) 146, 1057, 1162
NsbI TGCGCA 2 cut(s) 346, 516
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 2 cut(s) 877, 1163
PceI AGGCCT 1 cut(s) 812
PciI ACATGT 1 cut(s) 1159
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 4 cut(s) 38, 185, 445, 503
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 4 cut(s) 202, 583, 1006, 1137
PscI ACATGT 1 cut(s) 1159
PshAI GACNNNNGTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 812, 939
PspEI GGTNACC 1 cut(s) 1057
PspFI CCCAGC 2 cut(s) 681, 1129
PspGI CCWGG 2 cut(s) 812, 939
PspPI GGNCC 3 cut(s) 155, 209, 1045
PstNI CAGNNNCTG 2 cut(s) 985, 1010
PsuI RGATCY 2 cut(s) 82, 287
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 3 cut(s) 269, 436, 1173
RsaNI GTAC 3 cut(s) 268, 435, 1172
RseI CAYNNNNRTG 2 cut(s) 672, 792
SaqAI TTAA 4 cut(s) 284, 531, 750, 1029
SatI GCNGC 4 cut(s) 201, 582, 1005, 1136
Sau3AI GATC 6 cut(s) 82, 219, 287, 301, 312, 698
Sau96I GGNCC 3 cut(s) 155, 209, 1045
ScrFI CCNGG 3 cut(s) 332, 814, 941
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 1 cut(s) 874
SinI GGWCC 2 cut(s) 155, 209
SmiMI CAYNNNNRTG 2 cut(s) 672, 792
Sse9I AATT 6 cut(s) 348, 421, 430, 532, 564, 955
SseBI AGGCCT 1 cut(s) 812
SspMI CTAG 2 cut(s) 89, 609
StuI AGGCCT 1 cut(s) 812
StyD4I CCNGG 3 cut(s) 330, 812, 939
TaaI ACNGT 5 cut(s) 17, 32, 152, 472, 981
TaiI ACGT 1 cut(s) 297
TaqI TCGA 2 cut(s) 105, 909
TasI AATT 6 cut(s) 348, 421, 430, 532, 564, 955
TatI WGTACW 2 cut(s) 267, 434
TfiI GAWTC 4 cut(s) 38, 185, 445, 503
Tru1I TTAA 4 cut(s) 284, 531, 750, 1029
Tru9I TTAA 4 cut(s) 284, 531, 750, 1029
TscAI CASTG 1 cut(s) 524
TseFI GTSAC 3 cut(s) 146, 1057, 1162
TseI GCWGC 4 cut(s) 200, 581, 1004, 1135
Tsp45I GTSAC 3 cut(s) 146, 1057, 1162
TspDTI ATGAA 8 cut(s) 51, 72, 83, 381, 632, 656, 690, 804
TspGWI ACGGA 2 cut(s) 31, 261
TspRI CASTG 1 cut(s) 524
Tth111I GACNNNGTC 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 155, 209
XagI CCTNNNNNAGG 1 cut(s) 1052
XceI RCATGY 2 cut(s) 877, 1163
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 2 cut(s) 89, 609
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.