Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Forward (+)

29128089 .. 29130611

Gene Structure 2523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGATTCTTCAAAGTGGGTGAACACTTCTCTTGGCCTCAATCTTGTTCCTGTTGACTCACACCACGCCATGGACCAAGATCAACCTCCTTTGCCGATGTTCACTAAACAAGTAGAAGAGTTTGAAGGAGAATATGCTATATTTGAAAGCAACCTACGATCACCGAAACAAGAGACAGGTGCAGGTGCAGGTGGTACTGTGTTAATGGCTGAGGAATTGAACAGGATAACTTTGGAAAACAAGAAACTGACTCAGATGTTAGCTGTACTATGCGAGAATTACAACGCTCTGGAAACCCATGTGAAGGAGTTGAGGACCAACAAACAGCTGCCCTCTGAAAACGAGTTGATCTCATCAGGAAATACCTGCAGCTTGGCCAAGAAGAGAAAGTCACCAGGCAATGATCATCAAGACTATTGCAATAACGTCAATATGATTGGATTTAGTACAAATACAATAAGTACTGCAGAGACCAGCTCTAGTGACGAAGAATCATACAAAAGGCCCAAGGAGATGATGAGTGACATGAACCTCAAGATTTCTAGGGCTTATGTTCGCTGTGATGTCTCTGATACGCGCTTGATTGTGAAGGATGGATTTCAATGGAGGAAATACGGTCAAAAGGTAACCAGAGATAATCCTTCTCCTAGGGCTTACTACAAGTGCTCTTTTGCCCCATCTTGCCCAGTTAAAAAGAAGGTTCAGAAAAGTGCGGAAAATCCATGCTTTTTGGTGGCTACATATGAAGGGGAACACAACCACATACACCCTGCCGGACCTCAAGTGATAACAATAGATCACCAAGGCCATTCCAGTAATATTTTTGCACCAAAGATATCATCATCACCATCTTCAAGTCCTACTAGTACTGTGTCGACTATGTCTATGTCGTCGTCATGTGTACTTGACAGCTCGACAGAACCAGGTTCATCATTTGGTCACAAGCCAAATCAAGGAAGGGAAGCTTTCGATGATCAATATGATGAGAAGGCTACTAATTTTCCACAGCTTTTGGTCCAACAGATGGCTTCTTCGTTGACAAAAGATCCCAATTTTACAACTGCCCTTGCTGCTGCAATTTCTGCAGGAAGATTTAACATTTTAGACCAGCTGCCTCAACCTCATCCTCCCATCCCAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

382

Amino Acids

42.17

Weight (kDa)

6.27

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	167 - 224	2.8e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	173, 179
Acc36I	ACCTGC	3 cut(s)	173, 179, 374
AccB7I	CCANNNNNTGG	2 cut(s)	70, 1024
AccI	GTMKAC	1 cut(s)	875
AccII	CGCG	1 cut(s)	577
AciI	CCGC	1 cut(s)	713
AclWI	GGATC	1 cut(s)	1040
AcoI	YGGCCR	1 cut(s)	375
AfaI	GTAC	6 cut(s)	196, 267, 448, 463, 868, 903
AfiI	CCNNNNNNNGG	4 cut(s)	70, 304, 953, 1024
AgsI	TTSAA	6 cut(s)	12, 125, 146, 220, 602, 855
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	2 cut(s)	394, 922
AluBI	AGCT	8 cut(s)	263, 328, 372, 477, 912, 965, 1009, 1111
AluI	AGCT	8 cut(s)	263, 328, 372, 477, 912, 965, 1009, 1111
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	3 cut(s)	167, 464, 571
AlwI	GGATC	1 cut(s)	1040
AoxI	GGCC	4 cut(s)	34, 375, 503, 805
ApeKI	GCWGC	5 cut(s)	328, 369, 1070, 1073, 1111
AspA2I	CCTAGG	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	5 cut(s)	73, 315, 504, 776, 1015
AsuHPI	GGTGA	5 cut(s)	31, 153, 384, 791, 837
AvaII	GGWCC	4 cut(s)	73, 315, 776, 1015
AvrII	CCTAGG	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	668
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	5 cut(s)	315, 381, 1057, 1060, 1098
BccI	CCATC	5 cut(s)	587, 685, 856, 1018, 1139
BciT130I	CCWGG	2 cut(s)	396, 924
BclI	TGATCA	2 cut(s)	403, 973
BcoDI	GTCTC	3 cut(s)	167, 464, 571
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	4 cut(s)	480, 543, 648, 864
BfmI	CTRYAG	3 cut(s)	367, 465, 1083
BfuAI	ACCTGC	3 cut(s)	173, 179, 374
BisI	GCNGC	5 cut(s)	329, 370, 1071, 1074, 1112
BlnI	CCTAGG	1 cut(s)	647
BlsI	GCNGC	5 cut(s)	330, 371, 1072, 1075, 1113
BmcAI	AGTACT	2 cut(s)	463, 868
Bme1390I	CCNGG	2 cut(s)	396, 924
Bme18I	GGWCC	4 cut(s)	73, 315, 776, 1015
BmgT120I	GGNCC	5 cut(s)	73, 315, 504, 776, 1015
BmrFI	CCNGG	2 cut(s)	396, 924
BmrI	ACTGGG	1 cut(s)	680
BmuI	ACTGGG	1 cut(s)	680
BplI	GAGNNNNNCTC	4 cut(s)	335, 367, 461, 493
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	2 cut(s)	518, 765
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	4 cut(s)	69, 507, 647, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 304, 953, 1024
Bse1I	ACTGG	2 cut(s)	686, 813
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	396, 924
BseDI	CCNNGG	4 cut(s)	69, 507, 647, 802
BseGI	GGATG	3 cut(s)	598, 1123, 1131
BseLI	CCNNNNNNNGG	4 cut(s)	70, 304, 953, 1024
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	201, 266
BseNI	ACTGG	2 cut(s)	686, 813
BseXI	GCAGC	5 cut(s)	315, 381, 1057, 1060, 1098
BsgI	GTGCAG	2 cut(s)	201, 207
Bsh1236I	CGCG	1 cut(s)	577
BshFI	GGCC	4 cut(s)	36, 377, 505, 807
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	774
BslI	CCNNNNNNNGG	4 cut(s)	70, 304, 953, 1024
BsmAI	GTCTC	3 cut(s)	167, 464, 571
BsnI	GGCC	4 cut(s)	36, 377, 505, 807
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	4 cut(s)	36, 377, 505, 807
BspCNI	CTCAG	2 cut(s)	202, 265
BspFNI	CGCG	1 cut(s)	577
BspMAI	CTGCAG	3 cut(s)	371, 469, 1087
BspMI	ACCTGC	3 cut(s)	173, 179, 374
BspPI	GGATC	1 cut(s)	1040
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	686, 813
BssECI	CCNNGG	4 cut(s)	69, 507, 647, 802
BssMI	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
BssT1I	CCWWGG	4 cut(s)	69, 507, 647, 802
Bst2UI	CCWGG	2 cut(s)	396, 924
Bst4CI	ACNGT	3 cut(s)	199, 617, 871
Bst6I	CTCTTC	2 cut(s)	111, 377
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstDEI	CTNAG	2 cut(s)	210, 252
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	625
BstF5I	GGATG	3 cut(s)	598, 1123, 1131
BstFNI	CGCG	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	7 cut(s)	82, 161, 351, 406, 799, 976, 1048
BstMAI	GTCTC	3 cut(s)	167, 464, 571
BstMBI	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	1070, 1082
BstNI	CCWGG	2 cut(s)	396, 924
BstPI	GGTNACC	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	394, 922
BstSFI	CTRYAG	3 cut(s)	367, 465, 1083
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	5 cut(s)	315, 381, 1057, 1060, 1098
BstX2I	RGATCY	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	1045
BsuRI	GGCC	4 cut(s)	36, 377, 505, 807
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	598, 1123, 1131
BveI	ACCTGC	3 cut(s)	173, 179, 374
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	5 cut(s)	73, 315, 504, 776, 1015
CsiI	ACCWGGT	1 cut(s)	922
Csp6I	GTAC	6 cut(s)	195, 266, 447, 462, 867, 902
CspCI	CAANNNNNGTGG	2 cut(s)	993, 1028
CviAII	CATG	5 cut(s)	70, 299, 526, 723, 897
CviQI	GTAC	6 cut(s)	195, 266, 447, 462, 867, 902
DdeI	CTNAG	2 cut(s)	210, 252
DpnI	GATC	7 cut(s)	81, 160, 350, 405, 798, 975, 1047
DpnII	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	111, 377
EarI	CTCTTC	2 cut(s)	111, 377
Eco130I	CCWWGG	4 cut(s)	69, 507, 647, 802
Eco31I	GGTCTC	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	837
Eco47I	GGWCC	4 cut(s)	73, 315, 776, 1015
Eco91I	GGTNACC	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	394, 922
EcoRV	GATATC	1 cut(s)	837
EcoT14I	CCWWGG	4 cut(s)	69, 507, 647, 802
ErhI	CCWWGG	4 cut(s)	69, 507, 647, 802
FaeI	CATG	5 cut(s)	73, 302, 529, 726, 900
FalI	AAGNNNNNCTT	2 cut(s)	949, 981
FatI	CATG	5 cut(s)	69, 298, 525, 722, 896
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	2 cut(s)	403, 973
FblI	GTMKAC	1 cut(s)	875
Fnu4HI	GCNGC	5 cut(s)	329, 370, 1071, 1074, 1112
FokI	GGATG	3 cut(s)	605, 1110, 1118
Fsp4HI	GCNGC	5 cut(s)	329, 370, 1071, 1074, 1112
FspBI	CTAG	4 cut(s)	480, 543, 648, 864
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	5 cut(s)	329, 370, 1071, 1074, 1112
HaeIII	GGCC	4 cut(s)	36, 377, 505, 807
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	5 cut(s)	73, 302, 529, 726, 900
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	3 cut(s)	55, 876, 1038
HindII	GTYRAC	3 cut(s)	55, 876, 1038
HindIII	AAGCTT	1 cut(s)	963
HinfI	GANTC	4 cut(s)	5, 56, 250, 491
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	5 cut(s)	31, 153, 384, 791, 837
Hpy166II	GTNNAC	6 cut(s)	22, 55, 102, 876, 902, 1038
Hpy188I	TCNGA	4 cut(s)	255, 337, 571, 705
Hpy188III	TCNNGA	4 cut(s)	290, 357, 410, 535
Hpy8I	GTNNAC	6 cut(s)	22, 55, 102, 876, 902, 1038
Hpy99I	CGWCG	1 cut(s)	895
HpyAV	CCTTC	8 cut(s)	119, 298, 583, 651, 691, 740, 951, 982
HpyCH4III	ACNGT	3 cut(s)	199, 617, 871
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	8 cut(s)	182, 188, 369, 420, 467, 827, 1076, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1070, 1082
HpyF3I	CTNAG	2 cut(s)	210, 252
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	5 cut(s)	73, 302, 529, 726, 900
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	2 cut(s)	403, 973
Kzo9I	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
Lsp1109I	GCAGC	5 cut(s)	315, 381, 1057, 1060, 1098
MabI	ACCWGGT	1 cut(s)	922
MaeI	CTAG	4 cut(s)	480, 543, 648, 864
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	5 cut(s)	390, 482, 521, 625, 938
MalI	GATC	7 cut(s)	81, 160, 350, 405, 798, 975, 1047
MboI	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
MboII	GAAGA	6 cut(s)	128, 394, 500, 843, 1023, 1101
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	668
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	5 cut(s)	215, 277, 997, 1051, 1077
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	50, 244
MmeI	TCCRAC	1 cut(s)	1042
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	203, 690, 1095
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	2 cut(s)	328, 1111
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	2 cut(s)	396, 924
MvaI	CCWGG	2 cut(s)	396, 924
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	1070, 1082
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
NlaIII	CATG	5 cut(s)	73, 302, 529, 726, 900
NmuCI	GTSAC	4 cut(s)	390, 482, 521, 938
PaqCI	CACCTGC	2 cut(s)	173, 179
PfeI	GAWTC	2 cut(s)	5, 491
PflFI	GACNNNGTC	1 cut(s)	880
PflMI	CCANNNNNTGG	2 cut(s)	70, 1024
PkrI	GCNGC	5 cut(s)	330, 371, 1072, 1075, 1113
PleI	GAGTC	2 cut(s)	50, 244
PpsI	GAGTC	2 cut(s)	50, 244
Psp6I	CCWGG	2 cut(s)	394, 922
PspEI	GGTNACC	1 cut(s)	625
PspGI	CCWGG	2 cut(s)	394, 922
PspPI	GGNCC	5 cut(s)	73, 315, 504, 776, 1015
PstI	CTGCAG	3 cut(s)	371, 469, 1087
PsuI	RGATCY	1 cut(s)	1045
PsyI	GACNNNGTC	1 cut(s)	880
PvuII	CAGCTG	2 cut(s)	328, 1111
RsaI	GTAC	6 cut(s)	196, 267, 448, 463, 868, 903
RsaNI	GTAC	6 cut(s)	195, 266, 447, 462, 867, 902
SalI	GTCGAC	1 cut(s)	874
SaqAI	TTAA	3 cut(s)	203, 690, 1095
SatI	GCNGC	5 cut(s)	329, 370, 1071, 1074, 1112
Sau3AI	GATC	7 cut(s)	79, 158, 348, 403, 796, 973, 1045
Sau96I	GGNCC	5 cut(s)	73, 315, 504, 776, 1015
ScaI	AGTACT	2 cut(s)	463, 868
SchI	GAGTC	2 cut(s)	50, 244
ScrFI	CCNGG	2 cut(s)	396, 924
SduI	GDGCHC	1 cut(s)	668
SexAI	ACCWGGT	1 cut(s)	922
SfcI	CTRYAG	3 cut(s)	367, 465, 1083
SinI	GGWCC	4 cut(s)	73, 315, 776, 1015
SmlI	CTYRAG	2 cut(s)	533, 780
SmoI	CTYRAG	2 cut(s)	533, 780
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	5 cut(s)	215, 277, 997, 1051, 1077
SsiI	CCGC	1 cut(s)	713
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	4 cut(s)	480, 543, 648, 864
StyD4I	CCNGG	2 cut(s)	394, 922
StyI	CCWWGG	4 cut(s)	69, 507, 647, 802
TaaI	ACNGT	3 cut(s)	199, 617, 871
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	875, 914, 969
TasI	AATT	5 cut(s)	215, 277, 997, 1051, 1077
TatI	WGTACW	5 cut(s)	265, 446, 461, 866, 901
TfiI	GAWTC	2 cut(s)	5, 491
Tru1I	TTAA	3 cut(s)	203, 690, 1095
Tru9I	TTAA	3 cut(s)	203, 690, 1095
TseFI	GTSAC	4 cut(s)	390, 482, 521, 938
TseI	GCWGC	5 cut(s)	328, 369, 1070, 1073, 1111
Tsp45I	GTSAC	4 cut(s)	390, 482, 521, 938
TspDTI	ATGAA	3 cut(s)	542, 759, 918
Tth111I	GACNNNGTC	1 cut(s)	880
Van91I	CCANNNNNTGG	2 cut(s)	70, 1024
VpaK11BI	GGWCC	4 cut(s)	73, 315, 776, 1015
XmaJI	CCTAGG	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	875
XspI	CTAG	4 cut(s)	480, 543, 648, 864
ZrmI	AGTACT	2 cut(s)	463, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.