Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Reverse (-)

59777610 .. 59779358

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG400500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATTCTTCAACGTGGGTGAACACTTCTCTTGGCCTCAATCTTGTTCCTAACGACTCACTCCAAGCCATGGACGAAGGTCAACCTCCTGTACCGACTATCACGAAAAAAGTAGGAGAGTTTGAAGGAGAATATGATATATTTGAAAGCAACCTACGATCAGTGAAACAGGAGGCAGGTGCAGGTGCAGGTGGTAGTGTATTAATGGCTCAGGAGTTGAATAGAATAAGTTTGGAGAACAAGAAACTGACTGAGATGCTAACTGTACTATGCGAGAATTACAACTCTCTGGAAGCTCATGTAAAGGAGTTGATGACCACCAAACAGCTGGCCTCTGAGAACGAGTCGATGATCTTAGGAAATAACTGCTTGATCAAGAAGAGAAAGTCACCAGTTGATGATCATCAAGACTACTGCAATAACGTCAATATAATTGGATTTACTACAAATACAAGTACTGGGGAGACAAGCTCCAGTGACGAAGAAGCATACAAAAGGCCCAAGGAGATGAGCAACATCAACTTGAAGATTTCTAGGGTTTATGTTCGCACTGATGTCTCTGATACGCGCCTGATTGTGAAGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTCACCAGAGATAATCCTTCTCCTAGGGCTTACTACAAGTGCTCTTTTGCCCCAACTTGCCCAGTTAAAAAGAAGGTCCAAAAAAGTGCGGAAAATCCATGCCTATTAGTGGCTACATATGAAGGGGAACACAACCACATACTCCCCGCCGAACCTCAAGTAATAACAATAGATCACCAAGGCCAAGGTCGAAATCTAATTACTACTGCCCTACCATTACGTCATGATCATTCCAGTATTAGTTTGGCACCCAAGAGATCATCATCACCATCTTCAAGTCCTACTACCGTGTCTATGTCTATGTCGTCGTCATCTGTACTTGACAGTTCAACAGAACCGGGTTCATCATTTGGTTACAAACCGAATCAAGGAAGGCAAGCTTCGGATGATATTTATGATGAGAAGGCTACTAATTTCCAACAGCTTTTGGTCCAACAGATGGCTTCTTCGTTGACAAAAGATCCCAATTTCACAACTGCTCTTGCTGCTGCAATTTCTGCAGGAAGATTTAATATTTTAGACCAGCCTCATCCTCATCCTCCCATCCCAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

390

Amino Acids

43.03

Weight (kDa)

6.33

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	194 - 251	1.5e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	167, 173, 179
Acc36I	ACCTGC	3 cut(s)	167, 173, 179
AccB1I	GGYRCC	1 cut(s)	862
AccB7I	CCANNNNNTGG	2 cut(s)	70, 1054
AccII	CGCG	1 cut(s)	568
AciI	CCGC	2 cut(s)	704, 762
AclWI	GGATC	1 cut(s)	1070
AfaI	GTAC	4 cut(s)	93, 267, 457, 933
AfiI	CCNNNNNNNGG	4 cut(s)	70, 724, 983, 1054
AgsI	TTSAA	7 cut(s)	12, 125, 146, 220, 526, 891, 945
AluBI	AGCT	5 cut(s)	296, 328, 471, 995, 1039
AluI	AGCT	5 cut(s)	296, 328, 471, 995, 1039
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	2 cut(s)	458, 562
AlwI	GGATC	1 cut(s)	1070
AoxI	GGCC	4 cut(s)	34, 330, 497, 796
ApeKI	GCWGC	2 cut(s)	1100, 1103
AseI	ATTAAT	1 cut(s)	203
AspA2I	CCTAGG	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	3 cut(s)	498, 691, 1045
AsuC2I	CCSGG	1 cut(s)	954
AsuHPI	GGTGA	5 cut(s)	31, 381, 610, 782, 873
AvaII	GGWCC	2 cut(s)	691, 1045
AvrII	CCTAGG	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	862
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	1087, 1090
BccI	CCATC	4 cut(s)	578, 892, 1048, 1166
BclI	TGATCA	3 cut(s)	372, 400, 841
BcnI	CCSGG	1 cut(s)	954
BcoDI	GTCTC	2 cut(s)	458, 562
BfaI	CTAG	2 cut(s)	534, 639
BfmI	CTRYAG	1 cut(s)	1113
BfuAI	ACCTGC	3 cut(s)	167, 173, 179
BisI	GCNGC	2 cut(s)	1101, 1104
BlnI	CCTAGG	1 cut(s)	638
BlsI	GCNGC	2 cut(s)	1102, 1105
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	954
Bme18I	GGWCC	2 cut(s)	691, 1045
BmgT120I	GGNCC	3 cut(s)	498, 691, 1045
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	1 cut(s)	954
BmrI	ACTGGG	2 cut(s)	468, 671
BmsI	GCATC	1 cut(s)	246
BmuI	ACTGGG	2 cut(s)	468, 671
BoxI	GACNNNNGTC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	954
BsaBI	GATNNNNATC	3 cut(s)	402, 588, 877
BsaJI	CCNNGG	5 cut(s)	69, 501, 638, 793, 799
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 724, 983, 1054
Bse1I	ACTGG	5 cut(s)	392, 463, 474, 677, 849
Bse8I	GATNNNNATC	3 cut(s)	402, 588, 877
BseDI	CCNNGG	5 cut(s)	69, 501, 638, 793, 799
BseGI	GGATG	5 cut(s)	589, 1006, 1144, 1150, 1158
BseJI	GATNNNNATC	3 cut(s)	402, 588, 877
BseLI	CCNNNNNNNGG	4 cut(s)	70, 724, 983, 1054
BseMII	CTCAG	3 cut(s)	224, 243, 327
BseNI	ACTGG	5 cut(s)	392, 463, 474, 677, 849
BseXI	GCAGC	2 cut(s)	1087, 1090
BsgI	GTGCAG	2 cut(s)	201, 207
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	4 cut(s)	36, 332, 499, 798
BshNI	GGYRCC	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	953
BslI	CCNNNNNNNGG	4 cut(s)	70, 724, 983, 1054
BsmAI	GTCTC	2 cut(s)	458, 562
BsnI	GGCC	4 cut(s)	36, 332, 499, 798
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	704, 762
BspANI	GGCC	4 cut(s)	36, 332, 499, 798
BspCNI	CTCAG	3 cut(s)	223, 244, 328
BspFNI	CGCG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	1 cut(s)	864
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	3 cut(s)	167, 173, 179
BspPI	GGATC	1 cut(s)	1070
BspT107I	GGYRCC	1 cut(s)	862
BsrI	ACTGG	5 cut(s)	392, 463, 474, 677, 849
BssECI	CCNNGG	5 cut(s)	69, 501, 638, 793, 799
BssMI	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
BssT1I	CCWWGG	5 cut(s)	69, 501, 638, 793, 799
Bst4CI	ACNGT	3 cut(s)	265, 904, 941
Bst6I	CTCTTC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstC8I	GCNNGC	2 cut(s)	330, 993
BstDEI	CTNAG	4 cut(s)	210, 252, 336, 355
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	5 cut(s)	589, 1006, 1144, 1150, 1158
BstFNI	CGCG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	8 cut(s)	161, 354, 375, 403, 790, 844, 875, 1078
BstMAI	GTCTC	2 cut(s)	458, 562
BstMBI	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
BstMWI	GCNNNNNNNGC	2 cut(s)	1100, 1112
BstPAI	GACNNNNGTC	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	952
BstSFI	CTRYAG	1 cut(s)	1113
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	1087, 1090
BstX2I	RGATCY	1 cut(s)	1075
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	1075
BsuRI	GGCC	4 cut(s)	36, 332, 499, 798
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	5 cut(s)	589, 1006, 1144, 1150, 1158
BtsIMutI	CAGTG	3 cut(s)	168, 481, 549
BveI	ACCTGC	3 cut(s)	167, 173, 179
Cac8I	GCNNGC	2 cut(s)	330, 993
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	498, 691, 1045
Csp6I	GTAC	4 cut(s)	92, 266, 456, 932
CviAII	CATG	4 cut(s)	70, 299, 714, 839
CviQI	GTAC	4 cut(s)	92, 266, 456, 932
DdeI	CTNAG	4 cut(s)	210, 252, 336, 355
DpnI	GATC	8 cut(s)	160, 353, 374, 402, 789, 843, 874, 1077
DpnII	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	5 cut(s)	69, 501, 638, 793, 799
Eco32I	GATATC	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	691, 1045
Eco91I	GGTNACC	1 cut(s)	616
EcoO65I	GGTNACC	1 cut(s)	616
EcoRV	GATATC	1 cut(s)	590
EcoT14I	CCWWGG	5 cut(s)	69, 501, 638, 793, 799
ErhI	CCWWGG	5 cut(s)	69, 501, 638, 793, 799
FaeI	CATG	4 cut(s)	73, 302, 717, 842
FalI	AAGNNNNNCTT	2 cut(s)	979, 1011
FatI	CATG	4 cut(s)	69, 298, 713, 838
FauI	CCCGC	1 cut(s)	769
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	3 cut(s)	372, 400, 841
Fnu4HI	GCNGC	2 cut(s)	1101, 1104
FokI	GGATG	5 cut(s)	596, 1013, 1131, 1137, 1145
Fsp4HI	GCNGC	2 cut(s)	1101, 1104
FspBI	CTAG	2 cut(s)	534, 639
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	2 cut(s)	1101, 1104
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	4 cut(s)	36, 332, 499, 798
HapII	CCGG	1 cut(s)	953
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	4 cut(s)	73, 302, 717, 842
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	2 cut(s)	83, 1068
HindII	GTYRAC	2 cut(s)	83, 1068
HindIII	AAGCTT	1 cut(s)	993
HinfI	GANTC	4 cut(s)	5, 56, 344, 979
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	5 cut(s)	31, 381, 610, 782, 873
Hpy166II	GTNNAC	3 cut(s)	22, 83, 1068
Hpy188I	TCNGA	3 cut(s)	337, 562, 1000
Hpy188III	TCNNGA	6 cut(s)	103, 212, 290, 376, 407, 839
Hpy8I	GTNNAC	3 cut(s)	22, 83, 1068
Hpy99I	CGWCG	1 cut(s)	925
HpyAV	CCTTC	8 cut(s)	71, 119, 574, 642, 682, 731, 981, 1012
HpyCH4III	ACNGT	3 cut(s)	265, 904, 941
HpyCH4IV	ACGT	3 cut(s)	14, 423, 835
HpyCH4V	TGCA	5 cut(s)	182, 188, 417, 1106, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1100, 1112
HpyF3I	CTNAG	4 cut(s)	210, 252, 336, 355
HpySE526I	ACGT	3 cut(s)	14, 423, 835
Hsp92II	CATG	4 cut(s)	73, 302, 717, 842
HspAI	GCGC	1 cut(s)	568
Ksp22I	TGATCA	3 cut(s)	372, 400, 841
Kzo9I	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	2 cut(s)	1087, 1090
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	534, 639
MaeII	ACGT	3 cut(s)	14, 423, 835
MaeIII	GTNAC	4 cut(s)	387, 476, 616, 968
MalI	GATC	8 cut(s)	160, 353, 374, 402, 789, 843, 874, 1077
MboI	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
MboII	GAAGA	6 cut(s)	391, 494, 538, 879, 1053, 1131
MflI	RGATCY	1 cut(s)	1075
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	6 cut(s)	277, 432, 813, 1027, 1081, 1107
MlyI	GAGTC	2 cut(s)	50, 353
MmeI	TCCRAC	2 cut(s)	1057, 1072
MnlI	CCTC	9 cut(s)	47, 96, 166, 343, 591, 780, 1152, 1158, 1164
MseI	TTAA	3 cut(s)	203, 681, 1125
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	1 cut(s)	954
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	1100, 1112
NciI	CCSGG	1 cut(s)	954
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
NlaIII	CATG	4 cut(s)	73, 302, 717, 842
NlaIV	GGNNCC	1 cut(s)	864
NmuCI	GTSAC	3 cut(s)	387, 476, 616
PagI	TCATGA	1 cut(s)	838
PaqCI	CACCTGC	3 cut(s)	167, 173, 179
PfeI	GAWTC	2 cut(s)	5, 979
PflMI	CCANNNNNTGG	2 cut(s)	70, 1054
PkrI	GCNGC	2 cut(s)	1102, 1105
PleI	GAGTC	2 cut(s)	50, 352
PpsI	GAGTC	2 cut(s)	50, 352
PshAI	GACNNNNGTC	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	3 cut(s)	498, 691, 1045
PstI	CTGCAG	1 cut(s)	1117
PsuI	RGATCY	1 cut(s)	1075
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	4 cut(s)	93, 267, 457, 933
RsaNI	GTAC	4 cut(s)	92, 266, 456, 932
SaqAI	TTAA	3 cut(s)	203, 681, 1125
SatI	GCNGC	2 cut(s)	1101, 1104
Sau3AI	GATC	8 cut(s)	158, 351, 372, 400, 787, 841, 872, 1075
Sau96I	GGNCC	3 cut(s)	498, 691, 1045
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	2 cut(s)	50, 353
ScrFI	CCNGG	1 cut(s)	954
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	1113
SinI	GGWCC	2 cut(s)	691, 1045
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
Sse9I	AATT	6 cut(s)	277, 432, 813, 1027, 1081, 1107
SsiI	CCGC	2 cut(s)	704, 762
SspI	AATATT	1 cut(s)	1129
SspMI	CTAG	2 cut(s)	534, 639
StyD4I	CCNGG	1 cut(s)	952
StyI	CCWWGG	5 cut(s)	69, 501, 638, 793, 799
TaaI	ACNGT	3 cut(s)	265, 904, 941
TaiI	ACGT	3 cut(s)	17, 426, 838
TaqI	TCGA	2 cut(s)	347, 805
TasI	AATT	6 cut(s)	277, 432, 813, 1027, 1081, 1107
TatI	WGTACW	3 cut(s)	265, 455, 931
TfiI	GAWTC	2 cut(s)	5, 979
Tru1I	TTAA	3 cut(s)	203, 681, 1125
Tru9I	TTAA	3 cut(s)	203, 681, 1125
TscAI	CASTG	3 cut(s)	168, 481, 556
TseFI	GTSAC	3 cut(s)	387, 476, 616
TseI	GCWGC	2 cut(s)	1100, 1103
Tsp45I	GTSAC	3 cut(s)	387, 476, 616
TspDTI	ATGAA	2 cut(s)	750, 948
TspRI	CASTG	3 cut(s)	168, 481, 556
Van91I	CCANNNNNTGG	2 cut(s)	70, 1054
VpaK11BI	GGWCC	2 cut(s)	691, 1045
VspI	ATTAAT	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 856
XmaJI	CCTAGG	1 cut(s)	638
XspI	CTAG	2 cut(s)	534, 639
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.