Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Forward (+)

34983112 .. 34985123

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACTCAGAATGGGTGAACACTTCTCTCGGCCTCAATGTTATTCCTTTCCACCCTGCTAGTGATGATCAAGCTCCTGTGAAGAAGCAACAAGAGCTTGAAGGGGATTATGCTAAAGTATTTGAAGGCCATGCATCTGTGAAACAAGAGGCAGCAGCTAGCCATGTATTGACTGAAGAGTTGAATAGGATAAGTTTGGAGAACAAGAAGCTGACTGAGATGCTTACCGCTCTCTGTGAAAACTACACCAATTTGCAATCCCATGTGAAGGAGTTGATGACCGCCAAGCAGCAAAGCTCTGATCAAAACGATTTGGCTACAAACTTCAACAAGAAGCGAAAACCGGACAGCGAAGACTACAGAAACATGATTGGATTAACTAGTCCTGGGACTAATACTGAGACCAGCTCCATCAGTGATGAAGAGTACCCATGTAAGAGGCCGAAGGAGAACATGAACTTGAAGATTTCTAAGGTTTATGTACGCACTGAAGCCTCTGATACACGCCTGATTGTGAAGGATGGATATCAATGGAGAAAATATGGTCAAAAGGTCACCAGAGATAACCCATCTCCTAGGGCTTACTACAAGTGCTCCTTTGCCCCAAGTTGCCCAGTTAAAAAGAAGGTGCAAAAAAGTGCGGAAAATCCATGTTTGTTGGTGGCTACATATGAAGGAGAACATAACCACATGCACCCTGAAACCAGAGCTGAAGTAACATTGATAGGCTCAATATCTCCAAACCAGCAGCTTAGTCCGCTTTCTCCATCCATGGCCAAGAGAACATCGCCAGTTCCAACTTTCTCATGTGACAAAAATAATAATCTGAGCCCCCGAGAAATCGAAGGCGCTCCACCGGCTTTCCAACAGTTCTTGGTCCAACAAATGGCTTCTTCCTTGACCAAAGATCCCAATTTCGCATCTGCACTTGCTGCTGCCATTTCAGGAAGATTTTCAGACCATTCTCGGATGGGAAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

328

Amino Acids

36.58

Weight (kDa)

7.62

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	4 cut(s)	228, 282, 641, 758
AclWI	GGATC	1 cut(s)	902
AcoI	YGGCCR	1 cut(s)	774
AcuI	CTGAAG	3 cut(s)	195, 510, 732
AfaI	GTAC	2 cut(s)	428, 483
AfiI	CCNNNNNNNGG	2 cut(s)	268, 886
AgsI	TTSAA	5 cut(s)	101, 125, 184, 328, 463
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	8 cut(s)	74, 97, 158, 211, 297, 408, 710, 751
AluI	AGCT	8 cut(s)	74, 97, 158, 211, 297, 408, 710, 751
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	902
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	4 cut(s)	31, 127, 440, 774
ApeKI	GCWGC	6 cut(s)	152, 155, 289, 748, 932, 935
Asp700I	GAANNNNTTC	1 cut(s)	952
AspA2I	CCTAGG	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	851
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	2 cut(s)	28, 547
AsuNHI	GCTAGC	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	877
AvrII	CCTAGG	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	833
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	6 cut(s)	164, 167, 301, 760, 919, 922
BccI	CCATC	5 cut(s)	419, 515, 577, 775, 964
BciT130I	CCWGG	1 cut(s)	387
BclI	TGATCA	2 cut(s)	67, 301
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	4 cut(s)	60, 159, 381, 576
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	852
BisI	GCNGC	6 cut(s)	153, 156, 290, 749, 933, 936
BlnI	CCTAGG	1 cut(s)	575
BlsI	GCNGC	6 cut(s)	154, 157, 291, 750, 934, 937
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	877
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	877
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	3 cut(s)	143, 210, 929
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	386, 575, 771
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 886
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	2 cut(s)	614, 791
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	386, 575, 771
BseGI	GGATG	3 cut(s)	526, 767, 975
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	268, 886
BseMII	CTCAG	4 cut(s)	21, 207, 390, 818
BseNI	ACTGG	2 cut(s)	614, 791
BseXI	GCAGC	6 cut(s)	164, 167, 301, 760, 919, 922
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	4 cut(s)	33, 129, 442, 776
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	344, 857
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	268, 886
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	4 cut(s)	33, 129, 442, 776
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	834
Bsp1286I	GDGCHC	2 cut(s)	596, 833
Bsp143I	GATC	3 cut(s)	67, 301, 907
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	4 cut(s)	228, 282, 641, 758
BspANI	GGCC	4 cut(s)	33, 129, 442, 776
BspCNI	CTCAG	4 cut(s)	20, 208, 391, 819
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	902
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	2 cut(s)	614, 791
BssAI	RCCGGY	1 cut(s)	856
BssECI	CCNNGG	3 cut(s)	386, 575, 771
BssMI	GATC	3 cut(s)	67, 301, 907
BssT1I	CCWWGG	2 cut(s)	575, 771
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	870
Bst6I	CTCTTC	2 cut(s)	171, 417
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	6 cut(s)	7, 216, 399, 471, 752, 827
BstDSI	CCRYGG	1 cut(s)	771
BstEII	GGTNACC	1 cut(s)	553
BstF5I	GGATG	3 cut(s)	526, 767, 975
BstH2I	RGCGCY	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	3 cut(s)	70, 304, 910
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	67, 301, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 757, 857, 932
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	694
BstPI	GGTNACC	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	6 cut(s)	164, 167, 301, 760, 919, 922
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BsuRI	GGCC	4 cut(s)	33, 129, 442, 776
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	526, 767, 975
BtsIMutI	CAGTG	2 cut(s)	421, 486
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	1 cut(s)	851
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	1 cut(s)	877
Csp6I	GTAC	2 cut(s)	427, 482
CviQI	GTAC	2 cut(s)	427, 482
DdeI	CTNAG	6 cut(s)	7, 216, 399, 471, 752, 827
DpnI	GATC	3 cut(s)	69, 303, 909
DpnII	GATC	3 cut(s)	67, 301, 907
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	2 cut(s)	171, 417
EarI	CTCTTC	2 cut(s)	171, 417
Eco130I	CCWWGG	2 cut(s)	575, 771
Eco24I	GRGCYC	1 cut(s)	833
Eco31I	GGTCTC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	3 cut(s)	195, 510, 732
Eco88I	CYCGRG	1 cut(s)	834
Eco91I	GGTNACC	1 cut(s)	553
EcoO65I	GGTNACC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	527
EcoT14I	CCWWGG	2 cut(s)	575, 771
EcoT22I	ATGCAT	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	833
ErhI	CCWWGG	2 cut(s)	575, 771
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	670
FbaI	TGATCA	2 cut(s)	67, 301
Fnu4HI	GCNGC	6 cut(s)	153, 156, 290, 749, 933, 936
FokI	GGATG	2 cut(s)	533, 754
FriOI	GRGCYC	1 cut(s)	833
Fsp4HI	GCNGC	6 cut(s)	153, 156, 290, 749, 933, 936
FspBI	CTAG	4 cut(s)	60, 159, 381, 576
GlaI	GCGC	1 cut(s)	850
GluI	GCNGC	6 cut(s)	153, 156, 290, 749, 933, 936
HaeII	RGCGCY	1 cut(s)	852
HaeIII	GGCC	4 cut(s)	33, 129, 442, 776
HapII	CCGG	2 cut(s)	344, 857
HhaI	GCGC	1 cut(s)	851
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	344, 857
HphI	GGTGA	2 cut(s)	28, 547
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	10, 301, 499, 828, 958, 969
Hpy188III	TCNNGA	1 cut(s)	945
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	8 cut(s)	95, 119, 262, 439, 511, 619, 668, 839
HpyCH4III	ACNGT	1 cut(s)	870
HpyCH4V	TGCA	5 cut(s)	134, 256, 631, 694, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 757, 857, 932
HpyF3I	CTNAG	6 cut(s)	7, 216, 399, 471, 752, 827
HspAI	GCGC	1 cut(s)	849
Ksp22I	TGATCA	2 cut(s)	67, 301
Kzo9I	GATC	3 cut(s)	67, 301, 907
LmnI	GCTCC	4 cut(s)	79, 413, 599, 856
Lsp1109I	GCAGC	6 cut(s)	164, 167, 301, 760, 919, 922
LweI	GCATC	3 cut(s)	143, 210, 929
MaeI	CTAG	4 cut(s)	60, 159, 381, 576
MaeIII	GTNAC	3 cut(s)	553, 715, 809
MalI	GATC	3 cut(s)	69, 303, 909
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	3 cut(s)	67, 301, 907
MboII	GAAGA	7 cut(s)	94, 188, 365, 434, 475, 885, 960
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	2 cut(s)	596, 833
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	3 cut(s)	250, 913, 976
MluNI	TGGCCA	1 cut(s)	776
MmeI	TCCRAC	3 cut(s)	821, 889, 904
MnlI	CCTC	4 cut(s)	44, 142, 432, 505
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	952
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	2 cut(s)	377, 618
Msp20I	TGGCCA	1 cut(s)	776
MspI	CCGG	2 cut(s)	344, 857
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	94, 757, 857, 932
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	3 cut(s)	67, 301, 907
NheI	GCTAGC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	2 cut(s)	553, 809
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	952
PflMI	CCANNNNNTGG	1 cut(s)	886
PkrI	GCNGC	6 cut(s)	154, 157, 291, 750, 934, 937
Psp6I	CCWGG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	907
RsaI	GTAC	2 cut(s)	428, 483
RsaNI	GTAC	2 cut(s)	427, 482
SaqAI	TTAA	2 cut(s)	377, 618
SatI	GCNGC	6 cut(s)	153, 156, 290, 749, 933, 936
Sau3AI	GATC	3 cut(s)	67, 301, 907
Sau96I	GGNCC	1 cut(s)	877
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	596, 833
SfaNI	GCATC	3 cut(s)	143, 210, 929
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	877
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	3 cut(s)	250, 913, 976
SsiI	CCGC	4 cut(s)	228, 282, 641, 758
SspMI	CTAG	4 cut(s)	60, 159, 381, 576
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	575, 771
TaaI	ACNGT	1 cut(s)	870
TaqI	TCGA	1 cut(s)	843
TasI	AATT	3 cut(s)	250, 913, 976
Tru1I	TTAA	2 cut(s)	377, 618
Tru9I	TTAA	2 cut(s)	377, 618
TscAI	CASTG	2 cut(s)	421, 493
TseFI	GTSAC	2 cut(s)	553, 809
TseI	GCWGC	6 cut(s)	152, 155, 289, 748, 932, 935
Tsp45I	GTSAC	2 cut(s)	553, 809
TspDTI	ATGAA	3 cut(s)	435, 470, 687
TspRI	CASTG	2 cut(s)	421, 493
Van91I	CCANNNNNTGG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	877
XceI	RCATGY	1 cut(s)	694
XmaJI	CCTAGG	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	952
XspI	CTAG	4 cut(s)	60, 159, 381, 576
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.