Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Reverse (-)

60550369 .. 60552532

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGATTCTTCAACGTGGGTGAACACTTCTCTTGGCCTCAATCTTGTTGCTAACGACTCACTCCAAGCCATGGACGAAGGTCAACCTCCTGTACCGACTATCACGAAAAAAGTAGGAGAGTTTGAAGGAGAATATGATATATTTGAAAGCAACCTACGATCAGTGAAACAGGAGGCAGGTGCAGGTGGTAGTGTATTAATGGCTCAGGAGTTAAATAGAATAAGTTTGGAGAACAAGAAACTGACTGAGATGCTAACTGTACTATGCGAGAATTACAACTCTCTGGAAGCTCATGTAAAGGAGTTGATGACCACCAAACAGCTGGCCTCTGAGAACGAGTCGATGATCTTAGGAAATAACTGCTTGATCAAGAAGAGAAAGTCACCAGTTGATGATCATCAAGACTACTGCAATAACGTCAATATGATTGGATTTACTACAAATACAAGTACTGGGGAGACAAGCTCCAGTGACGAAGAAGCATACAAAAGGCCCAAGGAGATGAGCAACGTCAACTTGAAGATTTCTAGGGTTTATGTTCGCACTGATGTCTCTGATACGCGCCTGATTGTGAAGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTCACCAGAGATAATCCTTCTCCTAGGGCTTACTACAAGTGCTCTTTTGCCCCAACTTGCCCAGTTAAAAAGAAGGTTCAAAAAAGTGCGGAAAATCCATGCCTATTAGTGGCTACATATGAAGGGGAACACAACCACATACTCCCCGCCGAACCTCAAGTAATAACAATAGATCACGGTGATCATCAAGGCCAAGGTCGAAATCTAATTACTACTGCCCTACCATTACGTCATGATCATTCCAGTATTAGTTTGGCACCCAAGAGATCATCATCACCATCTTCAAGTCCTACTACCGTGTCTATGTCTATGTCGTCGTCATCTGTACTTGACAGTTCAACAGAACCGGGTTCATCATTTGGTTACAAACCGAATCAAGGAAGGCAAGCTTCCGATGATATTTATGAAGAGAAGGCTACTACTTTCCAACAGCTTTTGGTCCAACAGATGGCTTCTTCGTTGACAAAAGATCCCAATTTCACAACTGCTCTTGCTGCTGCAATTTCTGCAGGAAGATTTAATATTTTAGACCAGCCTCATCCTCATCCTCCCATCCCAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

391

Amino Acids

43.19

Weight (kDa)

6.23

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	192 - 249	1.5e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	167, 173
Acc36I	ACCTGC	2 cut(s)	167, 173
AccB1I	GGYRCC	1 cut(s)	865
AccB7I	CCANNNNNTGG	2 cut(s)	70, 1057
AccII	CGCG	1 cut(s)	562
AciI	CCGC	2 cut(s)	698, 756
AclWI	GGATC	1 cut(s)	1073
AfaI	GTAC	4 cut(s)	93, 261, 451, 936
AfiI	CCNNNNNNNGG	4 cut(s)	70, 718, 986, 1057
AgsI	TTSAA	7 cut(s)	12, 125, 146, 520, 689, 894, 948
AluBI	AGCT	5 cut(s)	290, 322, 465, 998, 1042
AluI	AGCT	5 cut(s)	290, 322, 465, 998, 1042
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	2 cut(s)	452, 556
AlwI	GGATC	1 cut(s)	1073
AoxI	GGCC	4 cut(s)	34, 324, 491, 799
ApeKI	GCWGC	2 cut(s)	1103, 1106
AseI	ATTAAT	1 cut(s)	197
AspA2I	CCTAGG	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	492, 1048
AsuC2I	CCSGG	1 cut(s)	957
AsuHPI	GGTGA	5 cut(s)	31, 375, 604, 800, 876
AvaII	GGWCC	1 cut(s)	1048
AvrII	CCTAGG	1 cut(s)	632
BanI	GGYRCC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	1090, 1093
BccI	CCATC	4 cut(s)	572, 895, 1051, 1169
BclI	TGATCA	4 cut(s)	366, 394, 790, 844
BcnI	CCSGG	1 cut(s)	957
BcoDI	GTCTC	2 cut(s)	452, 556
BfaI	CTAG	2 cut(s)	528, 633
BfmI	CTRYAG	1 cut(s)	1116
BfuAI	ACCTGC	2 cut(s)	167, 173
BisI	GCNGC	2 cut(s)	1104, 1107
BlnI	CCTAGG	1 cut(s)	632
BlsI	GCNGC	2 cut(s)	1105, 1108
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	957
Bme18I	GGWCC	1 cut(s)	1048
BmgT120I	GGNCC	2 cut(s)	492, 1048
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	1 cut(s)	957
BmrI	ACTGGG	2 cut(s)	462, 665
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	2 cut(s)	462, 665
BoxI	GACNNNNGTC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	451
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	750
BpuMI	CCSGG	1 cut(s)	957
BsaBI	GATNNNNATC	3 cut(s)	396, 582, 880
BsaJI	CCNNGG	4 cut(s)	69, 495, 632, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 718, 986, 1057
Bse1I	ACTGG	5 cut(s)	386, 457, 468, 671, 852
Bse8I	GATNNNNATC	3 cut(s)	396, 582, 880
BseDI	CCNNGG	4 cut(s)	69, 495, 632, 802
BseGI	GGATG	4 cut(s)	583, 1147, 1153, 1161
BseJI	GATNNNNATC	3 cut(s)	396, 582, 880
BseLI	CCNNNNNNNGG	4 cut(s)	70, 718, 986, 1057
BseMII	CTCAG	3 cut(s)	218, 237, 321
BseNI	ACTGG	5 cut(s)	386, 457, 468, 671, 852
BseXI	GCAGC	2 cut(s)	1090, 1093
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	4 cut(s)	36, 326, 493, 801
BshNI	GGYRCC	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	956
BslI	CCNNNNNNNGG	4 cut(s)	70, 718, 986, 1057
BsmAI	GTCTC	2 cut(s)	452, 556
BsnI	GGCC	4 cut(s)	36, 326, 493, 801
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp143I	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	698, 756
BspANI	GGCC	4 cut(s)	36, 326, 493, 801
BspCNI	CTCAG	3 cut(s)	217, 238, 322
BspFNI	CGCG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	1 cut(s)	867
BspMAI	CTGCAG	1 cut(s)	1120
BspMI	ACCTGC	2 cut(s)	167, 173
BspPI	GGATC	1 cut(s)	1073
BspT107I	GGYRCC	1 cut(s)	865
BsrI	ACTGG	5 cut(s)	386, 457, 468, 671, 852
BssECI	CCNNGG	4 cut(s)	69, 495, 632, 802
BssMI	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
BssT1I	CCWWGG	4 cut(s)	69, 495, 632, 802
Bst4CI	ACNGT	4 cut(s)	259, 788, 907, 944
Bst6I	CTCTTC	2 cut(s)	368, 1011
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstC8I	GCNNGC	2 cut(s)	324, 996
BstDEI	CTNAG	4 cut(s)	204, 246, 330, 349
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	4 cut(s)	583, 1147, 1153, 1161
BstFNI	CGCG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	9 cut(s)	161, 348, 369, 397, 784, 793, 847, 878, 1081
BstMAI	GTCTC	2 cut(s)	452, 556
BstMBI	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	1103, 1115
BstPAI	GACNNNNGTC	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	955
BstSFI	CTRYAG	1 cut(s)	1116
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	2 cut(s)	1090, 1093
BstX2I	RGATCY	1 cut(s)	1078
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	1078
BsuRI	GGCC	4 cut(s)	36, 326, 493, 801
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	583, 1147, 1153, 1161
BtsIMutI	CAGTG	3 cut(s)	168, 475, 543
BveI	ACCTGC	2 cut(s)	167, 173
Cac8I	GCNNGC	2 cut(s)	324, 996
CciI	TCATGA	1 cut(s)	841
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	492, 1048
Csp6I	GTAC	4 cut(s)	92, 260, 450, 935
CviAII	CATG	4 cut(s)	70, 293, 708, 842
CviQI	GTAC	4 cut(s)	92, 260, 450, 935
DdeI	CTNAG	4 cut(s)	204, 246, 330, 349
DpnI	GATC	9 cut(s)	160, 347, 368, 396, 783, 792, 846, 877, 1080
DpnII	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
Eam1104I	CTCTTC	2 cut(s)	368, 1011
EarI	CTCTTC	2 cut(s)	368, 1011
Eco130I	CCWWGG	4 cut(s)	69, 495, 632, 802
Eco32I	GATATC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	1048
Eco91I	GGTNACC	1 cut(s)	610
EcoO65I	GGTNACC	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	584
EcoT14I	CCWWGG	4 cut(s)	69, 495, 632, 802
ErhI	CCWWGG	4 cut(s)	69, 495, 632, 802
FaeI	CATG	4 cut(s)	73, 296, 711, 845
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FatI	CATG	4 cut(s)	69, 292, 707, 841
FauI	CCCGC	1 cut(s)	763
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	4 cut(s)	366, 394, 790, 844
Fnu4HI	GCNGC	2 cut(s)	1104, 1107
FokI	GGATG	4 cut(s)	590, 1134, 1140, 1148
Fsp4HI	GCNGC	2 cut(s)	1104, 1107
FspBI	CTAG	2 cut(s)	528, 633
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	1104, 1107
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	4 cut(s)	36, 326, 493, 801
HapII	CCGG	1 cut(s)	956
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	4 cut(s)	73, 296, 711, 845
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	3 cut(s)	83, 514, 1071
HindII	GTYRAC	3 cut(s)	83, 514, 1071
HindIII	AAGCTT	1 cut(s)	996
HinfI	GANTC	4 cut(s)	5, 56, 338, 982
HpaII	CCGG	1 cut(s)	956
HphI	GGTGA	5 cut(s)	31, 375, 604, 800, 876
Hpy166II	GTNNAC	4 cut(s)	22, 83, 514, 1071
Hpy188I	TCNGA	3 cut(s)	331, 556, 1003
Hpy188III	TCNNGA	6 cut(s)	103, 206, 284, 370, 401, 842
Hpy8I	GTNNAC	4 cut(s)	22, 83, 514, 1071
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	8 cut(s)	71, 119, 568, 636, 676, 725, 984, 1015
HpyCH4III	ACNGT	4 cut(s)	259, 788, 907, 944
HpyCH4IV	ACGT	4 cut(s)	14, 417, 510, 838
HpyCH4V	TGCA	4 cut(s)	182, 411, 1109, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1103, 1115
HpyF3I	CTNAG	4 cut(s)	204, 246, 330, 349
HpySE526I	ACGT	4 cut(s)	14, 417, 510, 838
Hsp92II	CATG	4 cut(s)	73, 296, 711, 845
HspAI	GCGC	1 cut(s)	562
Ksp22I	TGATCA	4 cut(s)	366, 394, 790, 844
Kzo9I	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	2 cut(s)	1090, 1093
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	528, 633
MaeII	ACGT	4 cut(s)	14, 417, 510, 838
MaeIII	GTNAC	4 cut(s)	381, 470, 610, 971
MalI	GATC	9 cut(s)	160, 347, 368, 396, 783, 792, 846, 877, 1080
MboI	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
MboII	GAAGA	7 cut(s)	385, 488, 532, 882, 1028, 1056, 1134
MflI	RGATCY	1 cut(s)	1078
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	4 cut(s)	271, 816, 1084, 1110
MlyI	GAGTC	2 cut(s)	50, 347
MmeI	TCCRAC	2 cut(s)	1060, 1075
MnlI	CCTC	9 cut(s)	47, 96, 166, 337, 585, 774, 1155, 1161, 1167
MseI	TTAA	4 cut(s)	197, 212, 675, 1128
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	1 cut(s)	956
MspR9I	CCNGG	1 cut(s)	957
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	1103, 1115
NciI	CCSGG	1 cut(s)	957
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
NlaIII	CATG	4 cut(s)	73, 296, 711, 845
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	3 cut(s)	381, 470, 610
PagI	TCATGA	1 cut(s)	841
PaqCI	CACCTGC	2 cut(s)	167, 173
PfeI	GAWTC	2 cut(s)	5, 982
PflMI	CCANNNNNTGG	2 cut(s)	70, 1057
PkrI	GCNGC	2 cut(s)	1105, 1108
PleI	GAGTC	2 cut(s)	50, 346
PpsI	GAGTC	2 cut(s)	50, 346
PshAI	GACNNNNGTC	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	2 cut(s)	492, 1048
PstI	CTGCAG	1 cut(s)	1120
PsuI	RGATCY	1 cut(s)	1078
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	4 cut(s)	93, 261, 451, 936
RsaNI	GTAC	4 cut(s)	92, 260, 450, 935
SaqAI	TTAA	4 cut(s)	197, 212, 675, 1128
SatI	GCNGC	2 cut(s)	1104, 1107
Sau3AI	GATC	9 cut(s)	158, 345, 366, 394, 781, 790, 844, 875, 1078
Sau96I	GGNCC	2 cut(s)	492, 1048
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	2 cut(s)	50, 347
ScrFI	CCNGG	1 cut(s)	957
SduI	GDGCHC	1 cut(s)	653
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	1116
SinI	GGWCC	1 cut(s)	1048
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
Sse9I	AATT	4 cut(s)	271, 816, 1084, 1110
SsiI	CCGC	2 cut(s)	698, 756
SspI	AATATT	1 cut(s)	1132
SspMI	CTAG	2 cut(s)	528, 633
StyD4I	CCNGG	1 cut(s)	955
StyI	CCWWGG	4 cut(s)	69, 495, 632, 802
TaaI	ACNGT	4 cut(s)	259, 788, 907, 944
TaiI	ACGT	4 cut(s)	17, 420, 513, 841
TaqI	TCGA	2 cut(s)	341, 808
TasI	AATT	4 cut(s)	271, 816, 1084, 1110
TatI	WGTACW	3 cut(s)	259, 449, 934
TfiI	GAWTC	2 cut(s)	5, 982
Tru1I	TTAA	4 cut(s)	197, 212, 675, 1128
Tru9I	TTAA	4 cut(s)	197, 212, 675, 1128
TscAI	CASTG	3 cut(s)	168, 475, 550
TseFI	GTSAC	3 cut(s)	381, 470, 610
TseI	GCWGC	2 cut(s)	1103, 1106
Tsp45I	GTSAC	3 cut(s)	381, 470, 610
TspDTI	ATGAA	3 cut(s)	744, 951, 1029
TspRI	CASTG	3 cut(s)	168, 475, 550
Van91I	CCANNNNNTGG	2 cut(s)	70, 1057
VpaK11BI	GGWCC	1 cut(s)	1048
VspI	ATTAAT	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	2 cut(s)	319, 859
XmaJI	CCTAGG	1 cut(s)	632
XspI	CTAG	2 cut(s)	528, 633
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.