Rorug06G0289200
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
43952430 .. 43957641
5212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0289200.1

Sequence Viewer

Length: 1257 bp
ATGCTGTCTCTCGTTTACACGACCCCAAAAGCCAATTCCACCTCTCCTCTCGTCAGCTTACCCCACTATTCTTCTTCTTCTCCTCCTTTTCACACTTCAACTCACCACACCCTATCTCTACCTGCTTCACCACGTCGCTCAACCAGGTTCAGAATGTCGTCCTCCGATTCGCTTCCCCCTCTCCCGGAAAACCGGACCGTGCTCGGTGTGGGCAGCATGGGGCTGGATTTCTTGGCGGTCGTGTCCTCTTATCCTCAGCCGGACGATAAGATCAGGACCACCAGCTTGAAGGTTCAAGGAGGTGGAAATGCCAGTAATGCTTTAACTTGTGTGGCTCGTTTGGGGCTAAGTCCCAGGGTCATTTCCAAGGTTGCGGATGATACACAAGGCAGGGGTATAATGGAGGAGCTACAAGCCGAAGGCGTAGATACTTCTTTTGTTGTGGTTGCTGAGGAGGGTAATTCACCATTTACCTACATTATTGTTGACAATGAAACGAATACTCGTACGTGTATTCATACTGAAGGATATCCTCCTATGATACCGGATGACCTTTCGCCTTCAAGTTTATCGTCTGCACTGGATGGAGCAAGACTTGCTTATTTTGATGGACGTCTACATGAAACTGCTTTACTTATTGCACAGGAGGCTACTCGCCGGAACATACCTATATTAATTGAGGCTGAAAGGATAAGAGAAGGGTTGGATGATCTTCTAAACTTGTCTGAGTATGCCATATGCTCAGCAAAATTTCCAAAGGCATGGACAGGAGCAGAAACTTTTCCAAGTGCTCTTGTTTCAATGCTTTTGAAATTGCCAAAGCTCAAATTTTCAATTGTGACCTTGGGTGAAGATGGATGCATAATGCTTGAGAGAAATATAGAAGAGGCTCCTCAGACGGAAGAAATGGACGTGGACAGCTTATTCGAAGCGCTGAAGCAGAGAAAGGATGACAGCATAACCAGACCAACATATGTTTCATCTCCAGTTACAAACTTGAGAGCCAATGGAATAGGGACAGTGTGTGGAAGGCTGCTTGTGGGAACAGCTGAGAAAATACCACCCTCTGAGCTTGTAGATACAACGGGTGCTGGAGATAGTTTTATTGGAGCAGTTATTTATGCTGTTTGCACCAACACGCCACCAGAGAAAATGCTCCCTTTTGCTTCTCAAGTGGCTGCTGCCTGCTGTAGAGGTTTGGGAGCACGAACTAGTCTTCCACACCGCACAGATCCACTCTTGGCACCATTTCTATGA

Protein Analysis

418

Amino Acids

44.95

Weight (kDa)

5.3

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 68 - 293 1.4e-21 pfkB family carbohydrate kinase
PfkB PF00294 351 - 408 5.5e-13 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 616
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 1243
AccI GTMKAC 1 cut(s) 616
AciI CCGC 3 cut(s) 236, 374, 1225
AclWI GGATC 1 cut(s) 1226
AcsI RAATTY 2 cut(s) 749, 827
AcuI CTGAAG 2 cut(s) 543, 956
AcyI GRCGYC 1 cut(s) 613
AfaI GTAC 1 cut(s) 508
AfeI AGCGCT 1 cut(s) 933
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 7 cut(s) 99, 289, 296, 564, 801, 811, 834
AhlI ACTAGT 1 cut(s) 1211
AjiI CACGTC 2 cut(s) 134, 913
AjnI CCWGG 2 cut(s) 143, 353
AjuI GAANNNNNNNTTGG 4 cut(s) 19, 51, 961, 993
AloI GAACNNNNNNTCC 2 cut(s) 1201, 1233
AluBI AGCT 7 cut(s) 57, 285, 409, 823, 921, 1049, 1072
AluI AGCT 7 cut(s) 57, 285, 409, 823, 921, 1049, 1072
Alw21I GWGCWC 3 cut(s) 204, 793, 1207
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 1226
Aor51HI AGCGCT 1 cut(s) 933
ApeKI GCWGC 4 cut(s) 213, 1033, 1178, 1181
ApoI RAATTY 2 cut(s) 749, 827
ArsI GACNNNNNNTTYG 2 cut(s) 908, 940
AseI ATTAAT 1 cut(s) 674
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 1 cut(s) 934
AspS9I GGNCC 2 cut(s) 195, 276
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 95, 120, 456, 860
AsuII TTCGAA 1 cut(s) 927
AvaII GGWCC 2 cut(s) 195, 276
BanI GGYRCC 1 cut(s) 1243
BbsI GAAGAC 1 cut(s) 1208
Bbv12I GWGCWC 3 cut(s) 204, 793, 1207
BbvCI CCTCAGC 2 cut(s) 255, 450
BbvI GCAGC 4 cut(s) 225, 1020, 1165, 1168
BccI CCATC 3 cut(s) 578, 602, 848
BciT130I CCWGG 2 cut(s) 145, 355
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 1211
BfaI CTAG 1 cut(s) 1212
BfmI CTRYAG 1 cut(s) 1189
BfoI RGCGCY 1 cut(s) 935
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 4 cut(s) 214, 1034, 1179, 1182
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 4 cut(s) 215, 1035, 1180, 1183
Bme1390I CCNGG 3 cut(s) 145, 185, 355
Bme18I GGWCC 2 cut(s) 195, 276
BmgBI CACGTC 2 cut(s) 134, 913
BmgT120I GGNCC 2 cut(s) 195, 276
BmiI GGNNCC 2 cut(s) 891, 1245
BmrFI CCNGG 3 cut(s) 145, 185, 355
BmsI GCATC 1 cut(s) 848
BpiI GAAGAC 1 cut(s) 1208
BpmI CTGGAG 2 cut(s) 969, 1113
Bpu10I CCTNAGC 2 cut(s) 255, 450
Bpu1102I GCTNAGC 1 cut(s) 742
Bpu14I TTCGAA 1 cut(s) 927
BpuEI CTTGAG 3 cut(s) 890, 1018, 1155
BpuMI CCSGG 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 4 cut(s) 353, 354, 366, 843
BsaWI WCCGGW 2 cut(s) 192, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 3 cut(s) 312, 585, 986
BseBI CCWGG 2 cut(s) 145, 355
BseDI CCNNGG 4 cut(s) 353, 354, 366, 843
BseGI GGATG 6 cut(s) 382, 553, 589, 712, 863, 955
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 7 cut(s) 269, 441, 717, 756, 908, 1041, 1059
BseNI ACTGG 3 cut(s) 312, 585, 986
BseRI GAGGAG 5 cut(s) 36, 72, 419, 467, 882
BseXI GCAGC 4 cut(s) 225, 1020, 1165, 1168
BsgI GTGCAG 1 cut(s) 561
Bsh1285I CGRYCG 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 1243
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 3 cut(s) 204, 793, 1207
BsiSI CCGG 5 cut(s) 185, 193, 260, 545, 658
BsiWI CGTACG 1 cut(s) 506
BslFI GGGAC 2 cut(s) 336, 1030
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 336, 1030
Bsp119I TTCGAA 1 cut(s) 927
Bsp1286I GDGCHC 3 cut(s) 204, 793, 1207
Bsp143I GATC 3 cut(s) 270, 709, 1231
Bsp1720I GCTNAGC 1 cut(s) 742
BspACI CCGC 3 cut(s) 236, 374, 1225
BspCNI CTCAG 7 cut(s) 268, 442, 718, 755, 907, 1042, 1060
BspLI GGNNCC 2 cut(s) 891, 1245
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 1226
BspT104I TTCGAA 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 1243
BsrI ACTGG 3 cut(s) 312, 585, 986
BssECI CCNNGG 4 cut(s) 353, 354, 366, 843
BssMI GATC 3 cut(s) 270, 709, 1231
BssNI GRCGYC 1 cut(s) 613
BssT1I CCWWGG 2 cut(s) 366, 843
Bst2UI CCWGG 2 cut(s) 145, 355
Bst4CI ACNGT 2 cut(s) 199, 1021
Bst6I CTCTTC 1 cut(s) 879
BstACI GRCGYC 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 927
BstC8I GCNNGC 1 cut(s) 1186
BstDEI CTNAG 8 cut(s) 255, 347, 450, 726, 742, 894, 1050, 1068
BstF5I GGATG 6 cut(s) 382, 553, 589, 712, 863, 955
BstH2I RGCGCY 1 cut(s) 935
BstHHI GCGC 1 cut(s) 934
BstKTI GATC 3 cut(s) 273, 712, 1234
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 270, 709, 1231
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 3 cut(s) 317, 596, 647
BstNI CCWGG 2 cut(s) 145, 355
BstSCI CCNGG 3 cut(s) 143, 183, 353
BstSFI CTRYAG 1 cut(s) 1189
BstV1I GCAGC 4 cut(s) 225, 1020, 1165, 1168
BstV2I GAAGAC 1 cut(s) 1208
BstX2I RGATCY 1 cut(s) 1231
BstXI CCANNNNNNTGG 1 cut(s) 762
BstYI RGATCY 1 cut(s) 1231
BtrI CACGTC 2 cut(s) 134, 913
BtsCI GGATG 6 cut(s) 382, 553, 589, 712, 863, 955
BtsIMutI CAGTG 2 cut(s) 578, 1026
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 1186
CfoI GCGC 1 cut(s) 934
Cfr13I GGNCC 2 cut(s) 195, 276
CpoI CGGWCCG 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 143
Csp6I GTAC 1 cut(s) 507
CspI CGGWCCG 1 cut(s) 195
CviAII CATG 3 cut(s) 217, 620, 762
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 8 cut(s) 255, 347, 450, 726, 742, 894, 1050, 1068
DpnI GATC 3 cut(s) 272, 711, 1233
DpnII GATC 3 cut(s) 270, 709, 1231
Eam1104I CTCTTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 879
Eco130I CCWWGG 2 cut(s) 366, 843
Eco32I GATATC 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 195, 276
Eco47III AGCGCT 1 cut(s) 933
Eco57I CTGAAG 2 cut(s) 543, 956
EcoRII CCWGG 2 cut(s) 143, 353
EcoRV GATATC 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 366, 843
EcoT22I ATGCAT 1 cut(s) 863
ErhI CCWWGG 2 cut(s) 366, 843
FaeI CATG 3 cut(s) 220, 623, 765
FalI AAGNNNNNCTT 2 cut(s) 583, 615
FaqI GGGAC 2 cut(s) 336, 1030
FatI CATG 3 cut(s) 216, 619, 761
FauNDI CATATG 2 cut(s) 737, 973
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 4 cut(s) 214, 1034, 1179, 1182
FokI GGATG 6 cut(s) 389, 560, 596, 719, 870, 962
Fsp4HI GCNGC 4 cut(s) 214, 1034, 1179, 1182
FspBI CTAG 1 cut(s) 1212
GlaI GCGC 1 cut(s) 933
GluI GCNGC 4 cut(s) 214, 1034, 1179, 1182
GsuI CTGGAG 2 cut(s) 969, 1113
HaeII RGCGCY 1 cut(s) 935
HapII CCGG 5 cut(s) 185, 193, 260, 545, 658
HhaI GCGC 1 cut(s) 934
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 3 cut(s) 220, 623, 765
Hin6I GCGC 1 cut(s) 932
HinP1I GCGC 1 cut(s) 932
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 1 cut(s) 167
HpaII CCGG 5 cut(s) 185, 193, 260, 545, 658
HphI GGTGA 4 cut(s) 95, 120, 456, 860
Hpy166II GTNNAC 4 cut(s) 16, 487, 617, 916
Hpy188I TCNGA 5 cut(s) 152, 166, 727, 897, 1069
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 4 cut(s) 16, 487, 617, 916
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 6 cut(s) 283, 413, 518, 570, 692, 1023
HpyCH4III ACNGT 2 cut(s) 199, 1021
HpyCH4IV ACGT 4 cut(s) 133, 509, 613, 912
HpyCH4V TGCA 4 cut(s) 578, 641, 861, 1131
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 596, 647
HpyF3I CTNAG 8 cut(s) 255, 347, 450, 726, 742, 894, 1050, 1068
HpySE526I ACGT 4 cut(s) 133, 509, 613, 912
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 3 cut(s) 220, 623, 765
HspAI GCGC 1 cut(s) 932
Kzo9I GATC 3 cut(s) 270, 709, 1231
LmnI GCTCC 7 cut(s) 406, 587, 770, 895, 1109, 1161, 1202
Lsp1109I GCAGC 4 cut(s) 225, 1020, 1165, 1168
LweI GCATC 1 cut(s) 848
MabI ACCWGGT 1 cut(s) 143
MaeI CTAG 1 cut(s) 1212
MaeII ACGT 4 cut(s) 133, 509, 613, 912
MaeIII GTNAC 2 cut(s) 838, 988
MalI GATC 3 cut(s) 272, 711, 1233
MboI GATC 3 cut(s) 270, 709, 1231
MboII GAAGA 8 cut(s) 63, 66, 69, 704, 863, 896, 914, 1208
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 3 cut(s) 204, 793, 1207
MluCI AATT 7 cut(s) 34, 460, 675, 749, 812, 827, 834
MmeI TCCRAC 1 cut(s) 684
Mph1103I ATGCAT 1 cut(s) 863
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 2 cut(s) 323, 674
MslI CAYNNNNRTG 1 cut(s) 1252
MspA1I CMGCKG 1 cut(s) 1049
MspI CCGG 5 cut(s) 185, 193, 260, 545, 658
MspR9I CCNGG 3 cut(s) 145, 185, 355
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 2 cut(s) 145, 355
MwoI GCNNNNNNNGC 3 cut(s) 317, 596, 647
NciI CCSGG 1 cut(s) 185
NdeI CATATG 2 cut(s) 737, 973
NdeII GATC 3 cut(s) 270, 709, 1231
NlaIII CATG 3 cut(s) 220, 623, 765
NlaIV GGNNCC 2 cut(s) 891, 1245
NmuCI GTSAC 1 cut(s) 838
NsiI ATGCAT 1 cut(s) 863
NspV TTCGAA 1 cut(s) 927
PasI CCCWGGG 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 1 cut(s) 167
Pfl23II CGTACG 1 cut(s) 506
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 4 cut(s) 215, 1035, 1180, 1183
Ppu21I YACGTR 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 143, 353
PspGI CCWGG 2 cut(s) 143, 353
PspLI CGTACG 1 cut(s) 506
PspN4I GGNNCC 2 cut(s) 891, 1245
PspPI GGNCC 2 cut(s) 195, 276
PsuI RGATCY 1 cut(s) 1231
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 1 cut(s) 1252
Rsr2I CGGWCCG 1 cut(s) 195
RsrII CGGWCCG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 323, 674
SatI GCNGC 4 cut(s) 214, 1034, 1179, 1182
Sau3AI GATC 3 cut(s) 270, 709, 1231
Sau96I GGNCC 2 cut(s) 195, 276
ScrFI CCNGG 3 cut(s) 145, 185, 355
SduI GDGCHC 3 cut(s) 204, 793, 1207
SexAI ACCWGGT 1 cut(s) 143
SfaNI GCATC 1 cut(s) 848
SfcI CTRYAG 1 cut(s) 1189
SfuI TTCGAA 1 cut(s) 927
SinI GGWCC 2 cut(s) 195, 276
SmiMI CAYNNNNRTG 1 cut(s) 1252
SmlI CTYRAG 3 cut(s) 869, 997, 1170
SmoI CTYRAG 3 cut(s) 869, 997, 1170
SpeI ACTAGT 1 cut(s) 1211
Sse9I AATT 7 cut(s) 34, 460, 675, 749, 812, 827, 834
SsiI CCGC 3 cut(s) 236, 374, 1225
SspMI CTAG 1 cut(s) 1212
StyD4I CCNGG 3 cut(s) 143, 183, 353
StyI CCWWGG 2 cut(s) 366, 843
TaaI ACNGT 2 cut(s) 199, 1021
TaiI ACGT 4 cut(s) 136, 512, 616, 915
TaqI TCGA 1 cut(s) 927
TasI AATT 7 cut(s) 34, 460, 675, 749, 812, 827, 834
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 323, 674
Tru9I TTAA 2 cut(s) 323, 674
TscAI CASTG 2 cut(s) 585, 1026
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 4 cut(s) 213, 1033, 1178, 1181
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 4 cut(s) 506, 507, 636, 969
TspGWI ACGGA 1 cut(s) 914
TspRI CASTG 2 cut(s) 585, 1026
VpaK11BI GGWCC 2 cut(s) 195, 276
VspI ATTAAT 1 cut(s) 674
XapI RAATTY 2 cut(s) 749, 827
XmiI GTMKAC 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 1 cut(s) 1212
ZraI GACGTC 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.