Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011530

Physical Location & Seq

Genomic Coordinates Forward (+)

9482139 .. 9484377

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGATTCTTCAACGTGGGTGAACACTTCTCTTGGCCTCAATCTTGTTCCTAACGACTCACTCCAGGCCATGGACGAAGGTCAACCTCCTGTTCCGACTATCACGAAAAAAGTAGAAGAGTTTGAAGGAGAATATGCTATATTTGAAAGCAACCTACGACCAGTGAAACAGGAGGCAGGTGCAGGTGCAGGTGGTAGTGGAGTAATGGCTCAGGAGTTGAATAGAATAAGTTTGGAGAACAAGAAACTGACTGAGATGCTAACTGTACTATGCGAGAATTACAACTCTCTGGAAGCTTATGTAAAGGAGTTGATGACCACCAAACAGCTGGCCTCTGAGAACGAGTCGATGATCTTAGGAAATAACTGCTTGATCAAGAAGAGAAAGTCACCAGTTGATGATCAGCAAGACTACTGCAATAACGTCAATATGATTGGATTTACTACAAATACAAGTACTGGGGAGACAAGCTCCAGTGACGAAGAAGCATACAAAAGGCCCAAGGAGATGAACAACATCAACTTGAAGATTTCTAGGGTTTATGTTCCCACTGATGTCTCGGATACGCGCCTGATTGTGAAGGATGGGTATCAATGGAGGAAATATGGTCAAAAGGTCACCAGAGATAATCCTTCTCCTAGGGCTTACTACAAGTGCTCTTTTGCCCCAACTTGCCCAGTTAAAAAGAAGGTTCAAAAAAGTGCGGAAAATCCATGCCTATTAGTGGCTACATATGAAGGGGAACACAACCACATACTCCCAGCCGAACCTCAAGTAATAACAATAGATCACCAAGGCGAAGGTCGAAATCTAATTACTACTGCCCTACCATTACGTCATGATCATTCCAGTATTAGTTTGGCACCCAAGAGATCATCATCACCATCTTCAAGTCCTACTACCGTGTCTATGTCGTCGTCATCTTTACTTGACAGTTCAACAGAACCGGGTTCATCATTTGGTTACAAACCGAATCAAGGAAAGCAAGCTTCCGATGATATTTCTGATGGGAAGGCTACTAATTTCCAACAGCTTTTGGTCCAACAGATGGCTTCTTCGTTGACAAAAGATCCCAATTTCACAACTGCTCTTGCTGCTGCAATTTCTGCAGGAAGATTTAATATTTTAGACCAGCCTCATCCTCATCCTCCCATCCCAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

388

Amino Acids

42.64

Weight (kDa)

6.04

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	194 - 251	1.5e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41060 FvH4_2g41060 FvH4_2g41060
malus_domestica	MD00G1143500.v1.1 MD15G1039500.v1.1
prunus_persica	Prupe.1G393000_v2.0.a1
pyrus_communis	pycom08g04760 pycom15g03690
rosa_chinensis	RchiOBHm_Chr6g0299501
rosa_laevigata	RLG00000011426
rosa_multiflora	Rmu_sc0001184.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168630
rosa_rugosa	Rorug06G0289200 Rorug06G0289200 Rorug06G0289300
rosa_samantha	Rh6AG400500 Rh6BG409200 Rh6CG414700 Rh6DG401600
rosa_wichuraiana	Rw6G035060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	167, 173, 179
Acc36I	ACCTGC	3 cut(s)	167, 173, 179
AccB1I	GGYRCC	1 cut(s)	862
AccB7I	CCANNNNNTGG	2 cut(s)	70, 1048
AccII	CGCG	1 cut(s)	568
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	1 cut(s)	1064
AfaI	GTAC	2 cut(s)	267, 457
AfiI	CCNNNNNNNGG	4 cut(s)	70, 724, 977, 1048
AgsI	TTSAA	8 cut(s)	12, 125, 146, 220, 526, 695, 891, 939
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	296, 328, 471, 989, 1033
AluI	AGCT	5 cut(s)	296, 328, 471, 989, 1033
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	2 cut(s)	458, 562
AlwI	GGATC	1 cut(s)	1064
AoxI	GGCC	4 cut(s)	34, 66, 330, 497
ApeKI	GCWGC	2 cut(s)	1094, 1097
AspA2I	CCTAGG	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	2 cut(s)	498, 1039
AsuC2I	CCSGG	1 cut(s)	948
AsuHPI	GGTGA	5 cut(s)	31, 381, 610, 782, 873
AvaII	GGWCC	1 cut(s)	1039
AvrII	CCTAGG	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	862
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	1081, 1084
BccI	CCATC	5 cut(s)	578, 892, 1001, 1042, 1160
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	3 cut(s)	372, 400, 841
BcnI	CCSGG	1 cut(s)	948
BcoDI	GTCTC	2 cut(s)	458, 562
BfaI	CTAG	2 cut(s)	534, 639
BfmI	CTRYAG	1 cut(s)	1107
BfuAI	ACCTGC	3 cut(s)	167, 173, 179
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	2 cut(s)	1095, 1098
BlnI	CCTAGG	1 cut(s)	638
BlsI	GCNGC	2 cut(s)	1096, 1099
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	65, 948
Bme18I	GGWCC	1 cut(s)	1039
BmgT120I	GGNCC	2 cut(s)	498, 1039
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	2 cut(s)	65, 948
BmrI	ACTGGG	2 cut(s)	468, 671
BmsI	GCATC	1 cut(s)	246
BmuI	ACTGGG	2 cut(s)	468, 671
BoxI	GACNNNNGTC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	2 cut(s)	47, 457
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	948
BsaBI	GATNNNNATC	2 cut(s)	588, 877
BsaJI	CCNNGG	4 cut(s)	69, 501, 638, 793
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 724, 977, 1048
Bse1I	ACTGG	6 cut(s)	161, 392, 463, 474, 677, 849
Bse8I	GATNNNNATC	2 cut(s)	588, 877
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	4 cut(s)	69, 501, 638, 793
BseGI	GGATG	4 cut(s)	589, 1138, 1144, 1152
BseJI	GATNNNNATC	2 cut(s)	588, 877
BseLI	CCNNNNNNNGG	4 cut(s)	70, 724, 977, 1048
BseMII	CTCAG	3 cut(s)	224, 243, 327
BseNI	ACTGG	6 cut(s)	161, 392, 463, 474, 677, 849
BseXI	GCAGC	2 cut(s)	1081, 1084
BseYI	CCCAGC	1 cut(s)	760
BsgI	GTGCAG	2 cut(s)	201, 207
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	4 cut(s)	36, 68, 332, 499
BshNI	GGYRCC	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	947
BslI	CCNNNNNNNGG	4 cut(s)	70, 724, 977, 1048
BsmAI	GTCTC	2 cut(s)	458, 562
BsnI	GGCC	4 cut(s)	36, 68, 332, 499
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	4 cut(s)	36, 68, 332, 499
BspCNI	CTCAG	3 cut(s)	223, 244, 328
BspFNI	CGCG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	1 cut(s)	864
BspMAI	CTGCAG	1 cut(s)	1111
BspMI	ACCTGC	3 cut(s)	167, 173, 179
BspPI	GGATC	1 cut(s)	1064
BspT107I	GGYRCC	1 cut(s)	862
BsrI	ACTGG	6 cut(s)	161, 392, 463, 474, 677, 849
BssECI	CCNNGG	4 cut(s)	69, 501, 638, 793
BssMI	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
BssT1I	CCWWGG	4 cut(s)	69, 501, 638, 793
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	265, 904, 935
Bst6I	CTCTTC	2 cut(s)	111, 374
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstC8I	GCNNGC	2 cut(s)	330, 987
BstDEI	CTNAG	4 cut(s)	210, 252, 336, 355
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	4 cut(s)	589, 1138, 1144, 1152
BstFNI	CGCG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	7 cut(s)	354, 375, 403, 790, 844, 875, 1072
BstMAI	GTCTC	2 cut(s)	458, 562
BstMBI	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	1094, 1106
BstNI	CCWGG	1 cut(s)	65
BstPAI	GACNNNNGTC	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	63, 946
BstSFI	CTRYAG	1 cut(s)	1107
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	1081, 1084
BstX2I	RGATCY	1 cut(s)	1069
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	36, 68, 332, 499
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	589, 1138, 1144, 1152
BtsIMutI	CAGTG	3 cut(s)	168, 481, 549
BveI	ACCTGC	3 cut(s)	167, 173, 179
Cac8I	GCNNGC	2 cut(s)	330, 987
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	2 cut(s)	498, 1039
Csp6I	GTAC	2 cut(s)	266, 456
CviAII	CATG	3 cut(s)	70, 714, 839
CviQI	GTAC	2 cut(s)	266, 456
DdeI	CTNAG	4 cut(s)	210, 252, 336, 355
DpnI	GATC	7 cut(s)	353, 374, 402, 789, 843, 874, 1071
DpnII	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
Eam1104I	CTCTTC	2 cut(s)	111, 374
EarI	CTCTTC	2 cut(s)	111, 374
Eco130I	CCWWGG	4 cut(s)	69, 501, 638, 793
Eco47I	GGWCC	1 cut(s)	1039
Eco91I	GGTNACC	1 cut(s)	616
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	4 cut(s)	69, 501, 638, 793
ErhI	CCWWGG	4 cut(s)	69, 501, 638, 793
FaeI	CATG	3 cut(s)	73, 717, 842
FatI	CATG	3 cut(s)	69, 713, 838
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	3 cut(s)	372, 400, 841
Fnu4HI	GCNGC	2 cut(s)	1095, 1098
FokI	GGATG	4 cut(s)	596, 1125, 1131, 1139
Fsp4HI	GCNGC	2 cut(s)	1095, 1098
FspBI	CTAG	2 cut(s)	534, 639
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	2 cut(s)	1095, 1098
GsaI	CCCAGC	1 cut(s)	764
GsuI	CTGGAG	2 cut(s)	47, 457
HaeIII	GGCC	4 cut(s)	36, 68, 332, 499
HapII	CCGG	1 cut(s)	947
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	3 cut(s)	73, 717, 842
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HincII	GTYRAC	2 cut(s)	83, 1062
HindII	GTYRAC	2 cut(s)	83, 1062
HindIII	AAGCTT	2 cut(s)	294, 987
HinfI	GANTC	4 cut(s)	5, 56, 344, 973
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	5 cut(s)	31, 381, 610, 782, 873
Hpy166II	GTNNAC	3 cut(s)	22, 83, 1062
Hpy188I	TCNGA	5 cut(s)	96, 337, 562, 994, 1006
Hpy188III	TCNNGA	5 cut(s)	103, 212, 290, 376, 839
Hpy8I	GTNNAC	3 cut(s)	22, 83, 1062
Hpy99I	CGWCG	1 cut(s)	919
HpyAV	CCTTC	8 cut(s)	71, 119, 574, 642, 682, 731, 794, 1006
HpyCH4III	ACNGT	3 cut(s)	265, 904, 935
HpyCH4IV	ACGT	3 cut(s)	14, 423, 835
HpyCH4V	TGCA	5 cut(s)	182, 188, 417, 1100, 1109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1094, 1106
HpyF3I	CTNAG	4 cut(s)	210, 252, 336, 355
HpySE526I	ACGT	3 cut(s)	14, 423, 835
Hsp92II	CATG	3 cut(s)	73, 717, 842
HspAI	GCGC	1 cut(s)	568
Ksp22I	TGATCA	3 cut(s)	372, 400, 841
Kzo9I	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	2 cut(s)	1081, 1084
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	534, 639
MaeII	ACGT	3 cut(s)	14, 423, 835
MaeIII	GTNAC	4 cut(s)	387, 476, 616, 962
MalI	GATC	7 cut(s)	353, 374, 402, 789, 843, 874, 1071
MboI	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
MboII	GAAGA	7 cut(s)	128, 391, 494, 538, 879, 1047, 1125
MflI	RGATCY	1 cut(s)	1069
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	5 cut(s)	277, 813, 1021, 1075, 1101
MlyI	GAGTC	2 cut(s)	50, 353
MmeI	TCCRAC	3 cut(s)	119, 1051, 1066
MnlI	CCTC	9 cut(s)	47, 96, 166, 343, 591, 780, 1146, 1152, 1158
MseI	TTAA	2 cut(s)	681, 1119
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	2 cut(s)	65, 948
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	1094, 1106
NciI	CCSGG	1 cut(s)	948
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
NlaIII	CATG	3 cut(s)	73, 717, 842
NlaIV	GGNNCC	1 cut(s)	864
NmuCI	GTSAC	3 cut(s)	387, 476, 616
PagI	TCATGA	1 cut(s)	838
PaqCI	CACCTGC	3 cut(s)	167, 173, 179
PfeI	GAWTC	2 cut(s)	5, 973
PflMI	CCANNNNNTGG	2 cut(s)	70, 1048
PkrI	GCNGC	2 cut(s)	1096, 1099
PleI	GAGTC	2 cut(s)	50, 352
PpsI	GAGTC	2 cut(s)	50, 352
PshAI	GACNNNNGTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	2 cut(s)	498, 1039
PstI	CTGCAG	1 cut(s)	1111
PsuI	RGATCY	1 cut(s)	1069
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	267, 457
RsaNI	GTAC	2 cut(s)	266, 456
SaqAI	TTAA	2 cut(s)	681, 1119
SatI	GCNGC	2 cut(s)	1095, 1098
Sau3AI	GATC	7 cut(s)	351, 372, 400, 787, 841, 872, 1069
Sau96I	GGNCC	2 cut(s)	498, 1039
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	2 cut(s)	50, 353
ScrFI	CCNGG	2 cut(s)	65, 948
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	1107
SinI	GGWCC	1 cut(s)	1039
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
Sse9I	AATT	5 cut(s)	277, 813, 1021, 1075, 1101
SsiI	CCGC	1 cut(s)	704
SspI	AATATT	1 cut(s)	1123
SspMI	CTAG	2 cut(s)	534, 639
StyD4I	CCNGG	2 cut(s)	63, 946
StyI	CCWWGG	4 cut(s)	69, 501, 638, 793
TaaI	ACNGT	3 cut(s)	265, 904, 935
TaiI	ACGT	3 cut(s)	17, 426, 838
TaqI	TCGA	2 cut(s)	347, 805
TasI	AATT	5 cut(s)	277, 813, 1021, 1075, 1101
TatI	WGTACW	2 cut(s)	265, 455
TfiI	GAWTC	2 cut(s)	5, 973
Tru1I	TTAA	2 cut(s)	681, 1119
Tru9I	TTAA	2 cut(s)	681, 1119
TscAI	CASTG	3 cut(s)	168, 481, 556
TseFI	GTSAC	3 cut(s)	387, 476, 616
TseI	GCWGC	2 cut(s)	1094, 1097
Tsp45I	GTSAC	3 cut(s)	387, 476, 616
TspDTI	ATGAA	3 cut(s)	524, 750, 942
TspRI	CASTG	3 cut(s)	168, 481, 556
Van91I	CCANNNNNTGG	2 cut(s)	70, 1048
VpaK11BI	GGWCC	1 cut(s)	1039
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 856
XmaJI	CCTAGG	1 cut(s)	638
XspI	CTAG	2 cut(s)	534, 639
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.