Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014122

Physical Location & Seq

Genomic Coordinates Reverse (-)

29151167 .. 29155121

Gene Structure 3955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCTGAGAGTCAAAGGTGTTGAAGCAGCTTTAAGAAGGTGCTTGAAGCAACATTACAGAGCCTTCTCCGCTCAGCCAAACTATGCCCACCATCACCACGACGACATCCAAGACCTGGTTACGGTTGAGGGAAGCACTAAATCAAGAGCAGCCATTCTCAACAGACCATCTGCACTCAATGCCCTCAATACTGCTATGGTTTCTCGCCTCAAGAGACTTTATGAATCATGGGAAGATAACCCCGCTATTGGTTTTGTCTTGATGAAGGGTAATGGGAGAGCCTTCTGTTCTGGTGCAGATGCCGTTACCCTTTATCAGCTAGTCAATCAAGGGAATGTTGAGGAATGCAGAAAGTTTTTCGAGACATTGTATAAGTTTGTATATATTCAAGGAACATACTTGAAGCCACATGTCGCTATCTTGGATGGTATAACTATGGGAGCTGGGGCTGGAATTTCACTTCCGGGAATGTTCCGTGTGGTGACTGATAAAACCGTTTTTTGCAATCCAGAGGCTCAAATGGGTTTCCACCCTGGTGCTGGAGCTTCCTATTATCTTTCTCATCTACCTGGCTACTTAGGAGAATACTTGGCTCTTACAGGGGACAAGCTTAATGGTGTGGAGATGATTGCATGTGGCCTTGCCACACATTATGCATTAAATGCAAGACTTGCTGTGGTTGAAGAACGTGTGGCTAAATTGGTCACAGACGAACCATCTGTTATAAAAGCATCTCTTGCAGAATATGGTGACCTTGTTTATCCAGACAGTAGGAGTATACTTGCTAAGCTTGAAGGGATTGACAGATGTTTCAGCCATGACACGGTTGAGGAAATTGTTGATGGTTTGGAAAAGGAAGCTGCTGATTCTTCTGATGAATGGTGCACAACAGCCCTCAAGAAACTAAAAGAAGCCTCCCCTTTGAGTTTGAAAGTTTCCTTACGATCTATACGTGAAGGAAGATTTGAATCTCTTCATCAATGTCTGGCTCGTGAATACCGGATATCTCTAAATGGAATTTCCAAACGGTTCTCAAGTGACTTCTGTGAGGGTGTTCGGGCAAGATTAGTGGATAAGGACTTTGCACCCAAGTGGGACCCTCCTAGTTTGAAAGAAGTGTCTACGGACATAGTCGACTGCTATTTCTCTCCGCTCCCTGAATTTGAGCCTGAGCTGAAGTTGCCAACTGCCTCACGAGAGCCATATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

404

Amino Acids

44.77

Weight (kDa)

6.16

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	49 - 382	1.1e-113	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	53 - 224	1.3e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31810
fragaria_vesca	FvH4_2g41110
malus_domestica	MD08G1057200.v1.1 MD15G1040200.v1.1
prunus_persica	Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1
pyrus_communis	pycom08g04670
rosa_chinensis	RchiOBHm_Chr6g0299431
rosa_laevigata	RLG00000011432
rosa_multiflora	Rmu_sc0037301.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168690
rosa_rugosa	Rorug06G0288100
rosa_samantha	Rh6AG400000 Rh6BG408600 Rh6CG414100
rosa_wichuraiana	Rw6G035010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccBSI	CCGCTC	2 cut(s)	71, 1153
AccI	GTMKAC	3 cut(s)	778, 1121, 1134
AciI	CCGC	3 cut(s)	69, 243, 1151
AcsI	RAATTY	3 cut(s)	453, 1017, 1160
AcuI	CTGAAG	1 cut(s)	1196
AfiI	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
AflIII	ACRYGT	2 cut(s)	409, 688
AgsI	TTSAA	9 cut(s)	23, 46, 389, 403, 683, 794, 931, 968, 1111
AjnI	CCWGG	3 cut(s)	114, 532, 568
AleI	CACNNNNGTG	2 cut(s)	534, 1090
AluBI	AGCT	8 cut(s)	29, 319, 443, 545, 610, 790, 860, 1174
AluI	AGCT	8 cut(s)	29, 319, 443, 545, 610, 790, 860, 1174
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	2 cut(s)	208, 356
Alw44I	GTGCAC	1 cut(s)	883
AoxI	GGCC	1 cut(s)	637
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	3 cut(s)	26, 149, 860
ApoI	RAATTY	3 cut(s)	453, 1017, 1160
Asp700I	GAANNNNTTC	1 cut(s)	972
AspS9I	GGNCC	1 cut(s)	1096
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	86, 493, 761
AvaII	GGWCC	1 cut(s)	1096
BaeGI	GKGCMC	1 cut(s)	887
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BauI	CACGAG	2 cut(s)	990, 1194
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	3 cut(s)	38, 161, 847
BccI	CCATC	5 cut(s)	99, 175, 419, 724, 836
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	3 cut(s)	116, 534, 570
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	208, 356
BfaI	CTAG	2 cut(s)	320, 1104
BisI	GCNGC	3 cut(s)	27, 150, 861
BlpI	GCTNAGC	2 cut(s)	72, 786
BlsI	GCNGC	3 cut(s)	28, 151, 862
Bme1390I	CCNGG	4 cut(s)	116, 465, 534, 570
Bme18I	GGWCC	1 cut(s)	1096
BmgT120I	GGNCC	1 cut(s)	1096
BmiI	GGNNCC	2 cut(s)	1097, 1098
BmrFI	CCNGG	4 cut(s)	116, 465, 534, 570
BmsI	GCATC	2 cut(s)	289, 740
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	1170
Bpu1102I	GCTNAGC	2 cut(s)	72, 786
BpuEI	CTTGAG	3 cut(s)	194, 881, 1018
BpuMI	CCSGG	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	953
BsaBI	GATNNNNATC	1 cut(s)	967
BsaJI	CCNNGG	1 cut(s)	532
BsaWI	WCCGGW	1 cut(s)	999
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
Bse8I	GATNNNNATC	1 cut(s)	967
BseBI	CCWGG	3 cut(s)	116, 534, 570
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	105, 430
BseJI	GATNNNNATC	1 cut(s)	967
BseLI	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
BseMII	CTCAG	2 cut(s)	86, 1161
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	3 cut(s)	38, 161, 847
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	2 cut(s)	156, 315
BshFI	GGCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	2 cut(s)	464, 1000
BslFI	GGGAC	2 cut(s)	617, 1109
BslI	CCNNNNNNNGG	5 cut(s)	115, 121, 248, 539, 823
BsmAI	GTCTC	2 cut(s)	208, 356
BsmFI	GGGAC	2 cut(s)	617, 1109
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp143I	GATC	1 cut(s)	944
Bsp1720I	GCTNAGC	2 cut(s)	72, 786
BspACI	CCGC	3 cut(s)	69, 243, 1151
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	2 cut(s)	85, 1162
BspLI	GGNNCC	2 cut(s)	1097, 1098
BsrBI	CCGCTC	2 cut(s)	71, 1153
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	1 cut(s)	944
BssNAI	GTATAC	1 cut(s)	779
BssSI	CACGAG	2 cut(s)	990, 1194
Bst1107I	GTATAC	1 cut(s)	779
Bst2BI	CACGAG	2 cut(s)	990, 1194
Bst2UI	CCWGG	3 cut(s)	116, 534, 570
Bst4CI	ACNGT	5 cut(s)	124, 496, 770, 826, 1029
Bst6I	CTCTTC	1 cut(s)	978
BstAPI	GCANNNNNTGC	4 cut(s)	179, 662, 671, 737
BstBAI	YACGTR	1 cut(s)	953
BstDEI	CTNAG	5 cut(s)	5, 72, 577, 786, 1170
BstEII	GGTNACC	1 cut(s)	749
BstF5I	GGATG	2 cut(s)	105, 430
BstKTI	GATC	1 cut(s)	947
BstMAI	GTCTC	2 cut(s)	208, 356
BstMBI	GATC	1 cut(s)	944
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 179, 662, 671, 737, 1180
BstNI	CCWGG	3 cut(s)	116, 534, 570
BstNSI	RCATGY	2 cut(s)	413, 636
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	4 cut(s)	114, 463, 532, 568
BstSLI	GKGCMC	1 cut(s)	887
BstV1I	GCAGC	3 cut(s)	38, 161, 847
BstZ17I	GTATAC	1 cut(s)	779
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	105, 430
Cfr13I	GGNCC	1 cut(s)	1096
CsiI	ACCWGGT	1 cut(s)	114
CspCI	CAANNNNNGTGG	2 cut(s)	1050, 1085
CviAII	CATG	4 cut(s)	228, 410, 633, 818
DdeI	CTNAG	5 cut(s)	5, 72, 577, 786, 1170
DpnI	GATC	1 cut(s)	946
DpnII	GATC	1 cut(s)	944
Eam1104I	CTCTTC	1 cut(s)	978
EarI	CTCTTC	1 cut(s)	978
Eco32I	GATATC	1 cut(s)	1005
Eco47I	GGWCC	1 cut(s)	1096
Eco57I	CTGAAG	1 cut(s)	1196
Eco91I	GGTNACC	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	1096
EcoO65I	GGTNACC	1 cut(s)	749
EcoRII	CCWGG	3 cut(s)	114, 532, 568
EcoRV	GATATC	1 cut(s)	1005
EcoT22I	ATGCAT	1 cut(s)	658
FaeI	CATG	4 cut(s)	231, 413, 636, 821
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FaqI	GGGAC	2 cut(s)	617, 1109
FatI	CATG	4 cut(s)	227, 409, 632, 817
FauI	CCCGC	1 cut(s)	250
FblI	GTMKAC	3 cut(s)	778, 1121, 1134
Fnu4HI	GCNGC	3 cut(s)	27, 150, 861
FokI	GGATG	2 cut(s)	92, 437
Fsp4HI	GCNGC	3 cut(s)	27, 150, 861
FspBI	CTAG	2 cut(s)	320, 1104
GluI	GCNGC	3 cut(s)	27, 150, 861
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	464, 1000
Hin1II	CATG	4 cut(s)	231, 413, 636, 821
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	2 cut(s)	608, 788
HinfI	GANTC	4 cut(s)	9, 224, 866, 968
HpaII	CCGG	2 cut(s)	464, 1000
HphI	GGTGA	3 cut(s)	86, 493, 761
Hpy166II	GTNNAC	4 cut(s)	779, 885, 1122, 1135
Hpy188I	TCNGA	1 cut(s)	874
Hpy188III	TCNNGA	9 cut(s)	144, 211, 259, 361, 509, 764, 898, 992, 1194
Hpy8I	GTNNAC	4 cut(s)	779, 885, 1122, 1135
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	6 cut(s)	30, 73, 259, 292, 788, 950
HpyCH4III	ACNGT	5 cut(s)	124, 496, 770, 826, 1029
HpyCH4IV	ACGT	2 cut(s)	688, 952
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 179, 662, 671, 737, 1180
HpyF3I	CTNAG	5 cut(s)	5, 72, 577, 786, 1170
HpySE526I	ACGT	2 cut(s)	688, 952
Hsp92II	CATG	4 cut(s)	231, 413, 636, 821
KflI	GGGWCCC	1 cut(s)	1096
Kzo9I	GATC	1 cut(s)	944
LmnI	GCTCC	3 cut(s)	440, 542, 1158
Lsp1109I	GCAGC	3 cut(s)	38, 161, 847
LweI	GCATC	2 cut(s)	289, 740
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	2 cut(s)	320, 1104
MaeII	ACGT	2 cut(s)	688, 952
MaeIII	GTNAC	6 cut(s)	118, 304, 481, 703, 749, 1037
MalI	GATC	1 cut(s)	946
MbiI	CCGCTC	2 cut(s)	71, 1153
MboI	GATC	1 cut(s)	944
MboII	GAAGA	5 cut(s)	245, 695, 861, 965, 972
MhlI	GDGCHC	1 cut(s)	887
MluCI	AATT	5 cut(s)	453, 698, 834, 1017, 1160
MlyI	GAGTC	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	3 cut(s)	32, 612, 659
MslI	CAYNNNNRTG	2 cut(s)	534, 1090
MspI	CCGG	2 cut(s)	464, 1000
MspR9I	CCNGG	4 cut(s)	116, 465, 534, 570
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	3 cut(s)	116, 534, 570
MwoI	GCNNNNNNNGC	6 cut(s)	68, 179, 662, 671, 737, 1180
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	1 cut(s)	944
NlaIII	CATG	4 cut(s)	231, 413, 636, 821
NlaIV	GGNNCC	2 cut(s)	1097, 1098
NmuCI	GTSAC	4 cut(s)	481, 703, 749, 1037
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	2 cut(s)	413, 636
OliI	CACNNNNGTG	2 cut(s)	534, 1090
PciI	ACATGT	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	949
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	3 cut(s)	224, 866, 968
PflFI	GACNNNGTC	1 cut(s)	1130
PflMI	CCANNNNNTGG	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	28, 151, 862
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	1 cut(s)	953
PpuMI	RGGWCCY	1 cut(s)	1096
PscI	ACATGT	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	1096
Psp6I	CCWGG	3 cut(s)	114, 532, 568
PspEI	GGTNACC	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	3 cut(s)	114, 532, 568
PspN4I	GGNNCC	2 cut(s)	1097, 1098
PspPI	GGNCC	1 cut(s)	1096
PspPPI	RGGWCCY	1 cut(s)	1096
PsyI	GACNNNGTC	1 cut(s)	1130
RseI	CAYNNNNRTG	2 cut(s)	534, 1090
SalI	GTCGAC	1 cut(s)	1133
SaqAI	TTAA	3 cut(s)	32, 612, 659
SatI	GCNGC	3 cut(s)	27, 150, 861
Sau3AI	GATC	1 cut(s)	944
Sau96I	GGNCC	1 cut(s)	1096
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	4 cut(s)	116, 465, 534, 570
SduI	GDGCHC	1 cut(s)	887
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	289, 740
SinI	GGWCC	1 cut(s)	1096
SmiMI	CAYNNNNRTG	2 cut(s)	534, 1090
SmlI	CTYRAG	3 cut(s)	209, 896, 1033
SmoI	CTYRAG	3 cut(s)	209, 896, 1033
Sse9I	AATT	5 cut(s)	453, 698, 834, 1017, 1160
SsiI	CCGC	3 cut(s)	69, 243, 1151
SspMI	CTAG	2 cut(s)	320, 1104
StyD4I	CCNGG	4 cut(s)	114, 463, 532, 568
TaaI	ACNGT	5 cut(s)	124, 496, 770, 826, 1029
TaiI	ACGT	2 cut(s)	691, 955
TaqI	TCGA	2 cut(s)	360, 1134
TasI	AATT	5 cut(s)	453, 698, 834, 1017, 1160
TfiI	GAWTC	3 cut(s)	224, 866, 968
Tru1I	TTAA	3 cut(s)	32, 612, 659
Tru9I	TTAA	3 cut(s)	32, 612, 659
TseFI	GTSAC	4 cut(s)	481, 703, 749, 1037
TseI	GCWGC	3 cut(s)	26, 149, 860
Tsp45I	GTSAC	4 cut(s)	481, 703, 749, 1037
TspDTI	ATGAA	4 cut(s)	237, 278, 891, 965
TspGWI	ACGGA	2 cut(s)	464, 1139
Tth111I	GACNNNGTC	1 cut(s)	1130
Van91I	CCANNNNNTGG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	883
VpaK11BI	GGWCC	1 cut(s)	1096
XapI	RAATTY	3 cut(s)	453, 1017, 1160
XceI	RCATGY	2 cut(s)	413, 636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmiI	GTMKAC	3 cut(s)	778, 1121, 1134
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	2 cut(s)	320, 1104
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.