Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014122

Physical Location & Seq

Genomic Coordinates Reverse (-)

35039028 .. 35042852

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G393600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGCAGAAAGCAAAAGCTTTTGAAACTTTGAGGAGGTGTGTGAGCCAGAGAGGAAGCTCTCTTTCCCATCACAGAGCCTTTTCTGCTCAACCAAACTATGCCCAATATGATGATGTCGAAGACCTGGTTACGGTTGAGGGAAGAGCTAAATCAAGAGCAGCCATTCTCAATAGACCATCTGCACTGAATGCTCTCAATAACGCTATGGCAGCTCGCCTGAAGAGACTCTATGAATCATGGGAGGACAACCCAGATATTGGATTTGTTTTGATGAAGGGTAGTGGGAGGGCCTTCTGCTCTGGTGCAGATGCTGTTAGCCTTTATCAACTAGTGAATGAAGGGAATGTTGAGGAATGTAAAAACTTTTTCGAGACATTGTATAAGTTTGTATATATCCAAGGAACCTACCTGAAGCCACATGTAGCGATATTGGATGGTATCACCATGGGAGCTGGGGCTGGCATTGCACTCCCAGGAATGTTCCGGGTGGTGACTGATAAAACTGTATTTGTCAATCCGGAGACTCAGATGGGTTTCCATCCTGATGCAGGGGCTTCCTTTTATCTGTCTCGTCTACCTGGCTACCTAGGAGAATACTTGGCTCTTACAGGAGACAAGCTTAATGGTGTAGAAATGATTGCATGTCGCCTTGCTACGCACTATACGCTAAACGCAAGACTTGCTGTGGTTGAAGAACGCCTTGGTAAATTAGCTACAGATGAACCTTCTGTAATAGAAACATCTCTTGCACAATATGGTGACCTTGTTTATCTAAACAAGAGGAGTATACTTTCTAAGCTTGAGGTTGTTGATAGATGTTTCAGCCATGACACGATTGAGGAAATTATTGATGCTTTGGAAAAGGAAGCTGCCGATTCTTATGATGAATGGTGCACAACAGCCCTCAAGAAACTAAAAGAAGCCTCCCCCTTGAGTTTGATAGTTTCTTTGCGATCTATACGTGAGGGCCGATTTCAATCACTTGATCAGTGTCTGGCTCGTGAATATCGTATATCCCTTAATGCAATTTCCAGACTGGTCTCTAGTGACTTCTTTGAGGGCGTTCGAGCAAGATTGGTGGACAAGGACTTTGCGCCCAAGGTATGGGATCCTCCTAGTTTTAAAGAAGTGTCCAAAGACATGGTTGATTGCTATTTCTCCCCACTTTCAGAATTTGAGCCTGAGCTGGAGCTGCCCACAGCATCACGAGAACCATTTATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

409

Amino Acids

45.62

Weight (kDa)

5.4

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31810
fragaria_vesca	FvH4_2g41110
malus_domestica	MD08G1057200.v1.1 MD15G1040200.v1.1
prunus_persica	Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1
pyrus_communis	pycom08g04670
rosa_chinensis	RchiOBHm_Chr6g0299431
rosa_laevigata	RLG00000011432
rosa_multiflora	Rmu_sc0037301.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168690
rosa_rugosa	Rorug06G0288100
rosa_samantha	Rh6AG400000 Rh6BG408600 Rh6CG414100
rosa_wichuraiana	Rw6G035010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	257, 1104
AccI	GTMKAC	2 cut(s)	574, 787
AccIII	TCCGGA	1 cut(s)	517
AclWI	GGATC	2 cut(s)	1103, 1116
AcsI	RAATTY	1 cut(s)	1172
AcuI	CTGAAG	2 cut(s)	239, 431
AfiI	CCNNNNNNNGG	4 cut(s)	130, 257, 548, 1104
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	23, 692, 977
AhlI	ACTAGT	1 cut(s)	328
AjnI	CCWGG	3 cut(s)	123, 472, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	684, 716
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	6 cut(s)	217, 365, 515, 573, 606, 1045
Alw44I	GTGCAC	1 cut(s)	892
AlwI	GGATC	2 cut(s)	1103, 1116
AlwNI	CAGNNNCTG	2 cut(s)	311, 994
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	2 cut(s)	288, 967
ApaLI	GTGCAC	1 cut(s)	892
ApeKI	GCWGC	4 cut(s)	158, 209, 869, 1192
ApoI	RAATTY	1 cut(s)	1172
ArsI	GACNNNNNNTTYG	2 cut(s)	1073, 1105
AspA2I	CCTAGG	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	1096
AspS9I	GGNCC	2 cut(s)	288, 967
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	3 cut(s)	433, 502, 770
AvrII	CCTAGG	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	896
BamHI	GGATCC	1 cut(s)	1108
BauI	CACGAG	2 cut(s)	999, 1206
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	896
BbvI	GCAGC	4 cut(s)	170, 221, 856, 1179
BccI	CCATC	5 cut(s)	75, 184, 428, 523, 546
BciT130I	CCWGG	3 cut(s)	125, 474, 579
BclI	TGATCA	1 cut(s)	985
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	6 cut(s)	217, 365, 515, 573, 606, 1045
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	4 cut(s)	329, 587, 1044, 1116
BfmI	CTRYAG	1 cut(s)	714
BisI	GCNGC	4 cut(s)	159, 210, 870, 1193
BlnI	CCTAGG	1 cut(s)	586
BlsI	GCNGC	4 cut(s)	160, 211, 871, 1194
Bme1390I	CCNGG	4 cut(s)	125, 474, 485, 579
BmgT120I	GGNCC	2 cut(s)	288, 967
BmiI	GGNNCC	2 cut(s)	403, 1110
BmrFI	CCNGG	4 cut(s)	125, 474, 485, 579
BmsI	GCATC	4 cut(s)	298, 535, 841, 1211
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	1208
Bpu10I	CCTNAGC	1 cut(s)	1182
BpuEI	CTTGAG	3 cut(s)	821, 890, 952
BpuMI	CCSGG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	962
BsaBI	GATNNNNATC	1 cut(s)	976
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	6 cut(s)	397, 444, 472, 586, 700, 1098
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 257, 548, 1104
Bse1I	ACTGG	1 cut(s)	1041
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	976
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	125, 474, 579
BseDI	CCNNGG	6 cut(s)	397, 444, 472, 586, 700, 1098
BseGI	GGATG	2 cut(s)	439, 538
BseJI	GATNNNNATC	1 cut(s)	976
BseLI	CCNNNNNNNGG	4 cut(s)	130, 257, 548, 1104
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	539, 1173
BseNI	ACTGG	1 cut(s)	1041
BseRI	GAGGAG	2 cut(s)	46, 796
BseSI	GKGCMC	1 cut(s)	896
BseXI	GCAGC	4 cut(s)	170, 221, 856, 1179
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	2 cut(s)	165, 324
BshFI	GGCC	2 cut(s)	290, 969
BsiHKAI	GWGCWC	1 cut(s)	896
BsiSI	CCGG	2 cut(s)	484, 518
BslI	CCNNNNNNNGG	4 cut(s)	130, 257, 548, 1104
BsmAI	GTCTC	6 cut(s)	217, 365, 515, 573, 606, 1045
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	290, 969
Bso31I	GGTCTC	1 cut(s)	1045
Bsp1286I	GDGCHC	1 cut(s)	896
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	953, 985, 1108
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	2 cut(s)	290, 969
BspCNI	CTCAG	2 cut(s)	538, 1174
BspEI	TCCGGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	403, 1110
BspPI	GGATC	2 cut(s)	1103, 1116
BspQI	GCTCTTC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	1045
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	1041
BssECI	CCNNGG	6 cut(s)	397, 444, 472, 586, 700, 1098
BssMI	GATC	3 cut(s)	953, 985, 1108
BssNAI	GTATAC	1 cut(s)	788
BssSI	CACGAG	2 cut(s)	999, 1206
BssT1I	CCWWGG	5 cut(s)	397, 444, 586, 700, 1098
Bst1107I	GTATAC	1 cut(s)	788
Bst2BI	CACGAG	2 cut(s)	999, 1206
Bst2UI	CCWGG	3 cut(s)	125, 474, 579
Bst4CI	ACNGT	2 cut(s)	133, 505
Bst6I	CTCTTC	2 cut(s)	136, 215
BstAPI	GCANNNNNTGC	2 cut(s)	188, 680
BstBAI	YACGTR	1 cut(s)	962
BstC8I	GCNNGC	2 cut(s)	214, 460
BstDEI	CTNAG	3 cut(s)	525, 795, 1182
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	758
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	439, 538
BstHHI	GCGC	1 cut(s)	1096
BstKTI	GATC	3 cut(s)	956, 988, 1111
BstMAI	GTCTC	6 cut(s)	217, 365, 515, 573, 606, 1045
BstMBI	GATC	3 cut(s)	953, 985, 1108
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 188, 209, 464, 664, 680, 1192
BstNI	CCWGG	3 cut(s)	125, 474, 579
BstNSI	RCATGY	2 cut(s)	422, 645
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	4 cut(s)	123, 472, 483, 577
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	896
BstV1I	GCAGC	4 cut(s)	170, 221, 856, 1179
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	1108
BstXI	CCANNNNNNTGG	1 cut(s)	1141
BstYI	RGATCY	1 cut(s)	1108
BstZ17I	GTATAC	1 cut(s)	788
BsuRI	GGCC	2 cut(s)	290, 969
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	439, 538
BtsIMutI	CAGTG	2 cut(s)	182, 995
Cac8I	GCNNGC	2 cut(s)	214, 460
CaiI	CAGNNNCTG	2 cut(s)	311, 994
CfoI	GCGC	1 cut(s)	1096
Cfr13I	GGNCC	2 cut(s)	288, 967
CsiI	ACCWGGT	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	1059, 1094
CviAII	CATG	6 cut(s)	237, 419, 445, 642, 827, 1141
DdeI	CTNAG	3 cut(s)	525, 795, 1182
DpnI	GATC	3 cut(s)	955, 987, 1110
DpnII	GATC	3 cut(s)	953, 985, 1108
DraI	TTTAAA	1 cut(s)	1123
Eam1104I	CTCTTC	2 cut(s)	136, 215
EarI	CTCTTC	2 cut(s)	136, 215
Eco130I	CCWWGG	5 cut(s)	397, 444, 586, 700, 1098
Eco31I	GGTCTC	1 cut(s)	1045
Eco57I	CTGAAG	2 cut(s)	239, 431
Eco91I	GGTNACC	1 cut(s)	758
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	123, 472, 577
EcoT14I	CCWWGG	5 cut(s)	397, 444, 586, 700, 1098
ErhI	CCWWGG	5 cut(s)	397, 444, 586, 700, 1098
FaeI	CATG	6 cut(s)	240, 422, 448, 645, 830, 1144
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FatI	CATG	6 cut(s)	236, 418, 444, 641, 826, 1140
FbaI	TGATCA	1 cut(s)	985
FblI	GTMKAC	2 cut(s)	574, 787
Fnu4HI	GCNGC	4 cut(s)	159, 210, 870, 1193
FokI	GGATG	2 cut(s)	446, 525
Fsp4HI	GCNGC	4 cut(s)	159, 210, 870, 1193
FspBI	CTAG	4 cut(s)	329, 587, 1044, 1116
GlaI	GCGC	1 cut(s)	1095
GluI	GCNGC	4 cut(s)	159, 210, 870, 1193
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	1208
HaeIII	GGCC	2 cut(s)	290, 969
HapII	CCGG	2 cut(s)	484, 518
HhaI	GCGC	1 cut(s)	1096
Hin1II	CATG	6 cut(s)	240, 422, 448, 645, 830, 1144
Hin6I	GCGC	1 cut(s)	1094
HinP1I	GCGC	1 cut(s)	1094
HindIII	AAGCTT	3 cut(s)	15, 617, 797
HinfI	GANTC	4 cut(s)	225, 233, 523, 875
HpaII	CCGG	2 cut(s)	484, 518
HphI	GGTGA	3 cut(s)	433, 502, 770
Hpy166II	GTNNAC	4 cut(s)	575, 788, 894, 1081
Hpy188I	TCNGA	2 cut(s)	528, 1171
Hpy188III	TCNNGA	8 cut(s)	153, 370, 518, 542, 907, 1001, 1032, 1206
Hpy8I	GTNNAC	4 cut(s)	575, 788, 894, 1081
HpyAV	CCTTC	4 cut(s)	268, 301, 332, 735
HpyCH4III	ACNGT	2 cut(s)	133, 505
HpyCH4IV	ACGT	1 cut(s)	961
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 188, 209, 464, 664, 680, 1192
HpyF3I	CTNAG	3 cut(s)	525, 795, 1182
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	6 cut(s)	240, 422, 448, 645, 830, 1144
HspAI	GCGC	1 cut(s)	1094
Kpn2I	TCCGGA	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	3 cut(s)	953, 985, 1108
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	449, 1189
Lsp1109I	GCAGC	4 cut(s)	170, 221, 856, 1179
LweI	GCATC	4 cut(s)	298, 535, 841, 1211
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	4 cut(s)	329, 587, 1044, 1116
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	4 cut(s)	127, 490, 758, 1046
MalI	GATC	3 cut(s)	955, 987, 1110
MboI	GATC	3 cut(s)	953, 985, 1108
MboII	GAAGA	4 cut(s)	131, 153, 232, 704
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	1 cut(s)	896
MluCI	AATT	4 cut(s)	707, 843, 1026, 1172
MlyI	GAGTC	2 cut(s)	219, 517
MroI	TCCGGA	1 cut(s)	517
MseI	TTAA	3 cut(s)	621, 1020, 1122
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	2 cut(s)	484, 518
MspR9I	CCNGG	4 cut(s)	125, 474, 485, 579
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	3 cut(s)	125, 474, 579
MwoI	GCNNNNNNNGC	7 cut(s)	83, 188, 209, 464, 664, 680, 1192
NciI	CCSGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	953, 985, 1108
NlaIII	CATG	6 cut(s)	240, 422, 448, 645, 830, 1144
NlaIV	GGNNCC	2 cut(s)	403, 1110
NmuCI	GTSAC	3 cut(s)	490, 758, 1046
NspI	RCATGY	2 cut(s)	422, 645
PciI	ACATGT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	2 cut(s)	967, 1006
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	233, 875
PflMI	CCANNNNNTGG	2 cut(s)	257, 1104
PkrI	GCNGC	4 cut(s)	160, 211, 871, 1194
PleI	GAGTC	2 cut(s)	219, 517
PpsI	GAGTC	2 cut(s)	219, 517
Ppu21I	YACGTR	1 cut(s)	962
PscI	ACATGT	1 cut(s)	418
Psp6I	CCWGG	3 cut(s)	123, 472, 577
PspEI	GGTNACC	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	3 cut(s)	123, 472, 577
PspN4I	GGNNCC	2 cut(s)	403, 1110
PspPI	GGNCC	2 cut(s)	288, 967
PstNI	CAGNNNCTG	2 cut(s)	311, 994
PsuI	RGATCY	1 cut(s)	1108
RseI	CAYNNNNRTG	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	621, 1020, 1122
SatI	GCNGC	4 cut(s)	159, 210, 870, 1193
Sau3AI	GATC	3 cut(s)	953, 985, 1108
Sau96I	GGNCC	2 cut(s)	288, 967
SchI	GAGTC	2 cut(s)	219, 517
ScrFI	CCNGG	4 cut(s)	125, 474, 485, 579
SduI	GDGCHC	1 cut(s)	896
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	4 cut(s)	298, 535, 841, 1211
SfcI	CTRYAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	3 cut(s)	800, 905, 931
SmoI	CTYRAG	3 cut(s)	800, 905, 931
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	4 cut(s)	707, 843, 1026, 1172
SspMI	CTAG	4 cut(s)	329, 587, 1044, 1116
StyD4I	CCNGG	4 cut(s)	123, 472, 483, 577
StyI	CCWWGG	5 cut(s)	397, 444, 586, 700, 1098
TaaI	ACNGT	2 cut(s)	133, 505
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	3 cut(s)	117, 369, 1066
TasI	AATT	4 cut(s)	707, 843, 1026, 1172
TfiI	GAWTC	2 cut(s)	233, 875
Tru1I	TTAA	3 cut(s)	621, 1020, 1122
Tru9I	TTAA	3 cut(s)	621, 1020, 1122
TscAI	CASTG	2 cut(s)	189, 995
TseFI	GTSAC	3 cut(s)	490, 758, 1046
TseI	GCWGC	4 cut(s)	158, 209, 869, 1192
Tsp45I	GTSAC	3 cut(s)	490, 758, 1046
TspDTI	ATGAA	5 cut(s)	246, 287, 351, 735, 900
TspRI	CASTG	2 cut(s)	189, 995
Van91I	CCANNNNNTGG	2 cut(s)	257, 1104
VneI	GTGCAC	1 cut(s)	892
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	1172
XceI	RCATGY	2 cut(s)	422, 645
XmaJI	CCTAGG	1 cut(s)	586
XmiI	GTMKAC	2 cut(s)	574, 787
XspI	CTAG	4 cut(s)	329, 587, 1044, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.