Rmu_sc0037301.1_g000004

Belongs to the enoyl-CoA hydratase isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037301.1
OG0014122
Physical Location & Seq
Reverse (-)
17301 .. 18960
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037301.1_g000004.1.cds

Sequence Viewer

Length: 483 bp
atgttgagattgcagctatttggtgtcatatggcaccttttgttgcacatcagctgcaggcttgaagggattgacagatgtttcagccatgacacggttgaggaaattattgatgctttggaaaaggaagctgctgattcttatgatgaatggtgcaccacagccctcaagaaactaaaagatgcctcccctttgagtttgaaagtttccctacgatctatacgtgaaggcagatttgaatctcttcatcaatgtctggctcgtgaataccggatatccctaaatggaatttccaaacgggtctcaagtgacttctgtgagggtgtttgggcgagattagtggaaaaggactttgcacccaagtgggaccctcctagtttgaaagaagtgtctaaagacatggttgactgctatttctctcacctccctgaagttgagcctgagctggagttgccaaccgcgtcgcgagagccatttatgtag

Protein Analysis

160

Amino Acids

18.49

Weight (kDa)

5.28

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31810
fragaria_vesca FvH4_2g41110
malus_domestica MD08G1057200.v1.1 MD15G1040200.v1.1
prunus_persica Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1
pyrus_communis pycom08g04670
rosa_chinensis RchiOBHm_Chr6g0299431
rosa_laevigata RLG00000011432
rosa_multiflora Rmu_sc0037301.1_g000004
rosa_roxburghii Rroxscaffold_7G00168690
rosa_rugosa Rorug06G0288100
rosa_samantha Rh6AG400000 Rh6BG408600 Rh6CG414100
rosa_wichuraiana Rw6G035010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AccII CGCG 2 cut(s) 461, 466
AciI CCGC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 4 cut(s) 65, 202, 239, 382
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 4 cut(s) 16, 54, 131, 445
AluI AGCT 4 cut(s) 16, 54, 131, 445
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 307
Alw44I GTGCAC 1 cut(s) 154
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 13, 54, 131
ApoI RAATTY 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 33
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 25, 41, 118
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 3 cut(s) 14, 55, 132
BlsI GCNGC 3 cut(s) 15, 56, 133
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 3 cut(s) 35, 368, 369
BmsI GCATC 2 cut(s) 103, 172
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 152, 289
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 307
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 3 cut(s) 25, 41, 118
Bsh1236I CGCG 2 cut(s) 461, 466
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 380
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 215
Bsp68I TCGCGA 1 cut(s) 466
BspACI CCGC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 2 cut(s) 461, 466
BspLI GGNNCC 3 cut(s) 35, 368, 369
BspMAI CTGCAG 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 307
BssMI GATC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 441
BstFNI CGCG 2 cut(s) 461, 466
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 2 cut(s) 461, 466
BstV1I GCAGC 3 cut(s) 25, 41, 118
BtuMI TCGCGA 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 367
CseI GACGC 1 cut(s) 450
CviAII CATG 2 cut(s) 89, 400
DdeI CTNAG 1 cut(s) 441
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 367
EcoRV GATATC 1 cut(s) 276
FaeI CATG 2 cut(s) 92, 403
FaiI YATR 7 cut(s) 29, 31, 90, 144, 221, 401, 479
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 88, 399
FauNDI CATATG 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 14, 55, 132
Fsp4HI GCNGC 3 cut(s) 14, 55, 132
FspBI CTAG 1 cut(s) 375
GluI GCNGC 3 cut(s) 14, 55, 132
GsuI CTGGAG 1 cut(s) 467
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 92, 403
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 2 cut(s) 137, 239
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 156, 406
Hpy188III TCNNGA 3 cut(s) 169, 263, 465
Hpy8I GTNNAC 2 cut(s) 156, 406
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 59, 221
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 5 cut(s) 13, 46, 57, 156, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 92, 403
KflI GGGWCCC 1 cut(s) 367
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 6 cut(s) 43, 242, 284, 431, 441, 453
Lsp1109I GCAGC 3 cut(s) 25, 41, 118
LweI GCATC 2 cut(s) 103, 172
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 2 cut(s) 105, 288
MnlI CCTC 6 cut(s) 94, 176, 196, 313, 381, 434
MroXI GAANNNNTTC 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 1 cut(s) 271
MvnI CGCG 2 cut(s) 461, 466
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeI CATATG 1 cut(s) 29
NdeII GATC 1 cut(s) 215
NlaIII CATG 2 cut(s) 92, 403
NlaIV GGNNCC 3 cut(s) 35, 368, 369
NmuCI GTSAC 1 cut(s) 308
NruI TCGCGA 1 cut(s) 466
OliI CACNNNNGTG 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 137, 239
PkrI GCNGC 3 cut(s) 15, 56, 133
Ppu21I YACGTR 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 35, 368, 369
PspPI GGNCC 1 cut(s) 367
PspPPI RGGWCCY 1 cut(s) 367
PstI CTGCAG 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 54
RruI TCGCGA 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 361
SatI GCNGC 3 cut(s) 14, 55, 132
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 158
SetI ASST 7 cut(s) 18, 39, 56, 133, 226, 426, 447
SfaNI GCATC 2 cut(s) 103, 172
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 167, 304
SmoI CTYRAG 2 cut(s) 167, 304
Sse9I AATT 2 cut(s) 105, 288
SsiI CCGC 1 cut(s) 459
SspMI CTAG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 226
TasI AATT 2 cut(s) 105, 288
TfiI GAWTC 2 cut(s) 137, 239
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 13, 54, 131
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 162, 236
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.