MD15G1040200.v1.1

Belongs to the enoyl-CoA hydratase isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014122
Physical Location & Seq
Reverse (-)
2837832 .. 2838939
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1040200.v1.1.491

Sequence Viewer

Length: 294 bp
ATGAATAAACGAAGCCTCCCTTTGAGTTTGATAGTTTCTTTACTATCGATACGTGAGGGCAGATTTCAACCTCTTGATCAGTGTCTGGCTCGTGAATATCGTACATCTCTTGCTGCAATTTCCAACCTGGTCTCTAGTGATTTCTCTGAGTGGAACCCTCGTAGTTTCAAAGATGTGTCCAAAGACATGGTTGATTGCTATTTCTCGCCACTTCCCGAAGTTGAGCCGGAGCCGGAGCTGCCGACAGCTATGCGAGAGCCATTTATGCAAGAGACGGATTCACCCAAAAAATGA

Protein Analysis

98

Amino Acids

11.14

Weight (kDa)

4.92

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31810
fragaria_vesca FvH4_2g41110
malus_domestica MD08G1057200.v1.1 MD15G1040200.v1.1
prunus_persica Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1 Prupe.1G393600_v2.0.a1
pyrus_communis pycom08g04670
rosa_chinensis RchiOBHm_Chr6g0299431
rosa_laevigata RLG00000011432
rosa_multiflora Rmu_sc0037301.1_g000004
rosa_roxburghii Rroxscaffold_7G00168690
rosa_rugosa Rorug06G0288100
rosa_samantha Rh6AG400000 Rh6BG408600 Rh6CG414100
rosa_wichuraiana Rw6G035010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 68, 169
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 238, 248
AluI AGCT 2 cut(s) 238, 248
Alw26I GTCTC 2 cut(s) 136, 266
AlwNI CAGNNNCTG 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 113, 238
AsuHPI GGTGA 1 cut(s) 273
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 2 cut(s) 100, 225
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 136, 266
BfaI CTAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 114, 239
BlsI GCNGC 2 cut(s) 115, 240
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 155, 231
BmrFI CCNGG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 136
BsaXI ACNNNNNCTCC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 47
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 100, 225
BshVI ATCGAT 1 cut(s) 47
BsiSI CCGG 2 cut(s) 227, 233
BsmAI GTCTC 2 cut(s) 136, 266
BsmBI CGTCTC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 155, 231
BspTNI GGTCTC 1 cut(s) 136
BssMI GATC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 136, 266
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 238, 265
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 100, 225
BstXI CCANNNNNNTGG 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 47
BsuTUI ATCGAT 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 15, 89, 226, 232, 238, 248, 259
CviKI_1 RGCY 7 cut(s) 15, 89, 226, 232, 238, 248, 259
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 1 cut(s) 190
FaiI YATR 3 cut(s) 188, 251, 266
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 114, 239
Fsp4HI GCNGC 2 cut(s) 114, 239
FspBI CTAG 1 cut(s) 135
GluI GCNGC 2 cut(s) 114, 239
HapII CCGG 2 cut(s) 227, 233
Hin1II CATG 1 cut(s) 190
HinfI GANTC 1 cut(s) 278
HpaII CCGG 2 cut(s) 227, 233
HphI GGTGA 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 74, 92, 215
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 116, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 265
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 229, 235
LpnPI CCDG 5 cut(s) 71, 113, 140, 240, 246
Lsp1109I GCAGC 2 cut(s) 100, 225
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 52
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MluCI AATT 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 4 cut(s) 26, 49, 81, 168
MspI CCGG 2 cut(s) 227, 233
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 238, 265
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 155, 231
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 115, 240
Ppu21I YACGTR 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 155, 231
PstNI CAGNNNCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SatI GCNGC 2 cut(s) 114, 239
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 128
SetI ASST 5 cut(s) 55, 73, 129, 240, 250
SexAI ACCWGGT 1 cut(s) 126
Sse9I AATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 1 cut(s) 86
TseI GCWGC 2 cut(s) 113, 238
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 86
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.