FvH4_2g41120

phospholipase d

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
29155412 .. 29158282
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41120.t1

Sequence Viewer

Length: 1548 bp
ATGAAAGTCATACGCAGTCTCAATATCGTCGTCATCGTTTTGGTTTTAGTCAAGTTGCTACCCGTCTCTCAAGGTTCAGGTTCGGCGCAATGCAAAGCATGGTTGGTCCAATCAATCCCCACAGACATGCCCGGCCTCCATCGTGTCCCTGGTGTCCTCTCCACCGCGGATGTGTTCCGATGGCTGGCGCGGAACTCAACACAGAGACTGGACATAATAGCTCAGTACTGGCAGTTTGTAGCCAATCCTCAAGACCCTCACTCTGGAGATTTTGGATACTCAAAACACGACATGATGAGATTTGGAGCTCACCAAGGTGCTTCTGTTTATAGAGCCTTGGATGATGCTGCTAATCGCAATCTTTCTATCAGGCTACTATCACACTCGGGTGTATATCCTGACTACACCAAAGAACCTTCCAAACTTGCTTCAGGAAGGCCCAATGTGAAGAATGTCACTTTGTTACTTAGTGATTGGTGGGGTTCTGGCATTGTCCATGCCAAAGTTTGGATATCAGATCGGCGACATGTGTATATTGGCTCTGCAAATAATGACTGGAAGTCTCTCACACAAGTCAAGGAAGTTGGAATCTACCTTGCTGATTGTCCCAAAATAGCGAGAAAGGTTGAGACATACTTTGACAACCTGTGGAAACTTGCATCTCTTAATCCTACTGCTTATACAACAAATGTATCAGATAATCAGTGGCAGACTGAGAGACAAGTTCCTTGCTGGTCGCATTTTGTGGATTCCAAAGCGAGGTGTAGTTCACCTCTCCCTGGGATTGTGGAGACTGACCATGTAGCAGGATACCCCATACTGTCAGACCCTGATATGTTCAAAACTCAACTCCAGACTCCTGGACATAATGATTCAAGTCTGCAACCTCAATCCAGCTATCTATCTTTTGCTCCTCCAGAGCTGTCATTTGGCAAGTACCAGGCAGATGAACAAGCATGGATAGATACTATTACTTCTGTAGGACGTGGAGGGACTGTTAGGATTAGTACCATGGACTGGCTTGGTCAGTCCCAATTTATGGAGCAAACAATTTATTGGTCATCCCTCTCCTCTGCAATATCAGAGGTTGTGTTTGCAAAGAAAGCAACAGTGAAGTTATTAGTAGCACATTGGGCACATTTTATCAGCAGCACAGATCAGTACCTGAAATCTCTCCTCTACTCTAATGTTCTATGCAATTCATCCGAGTATAACCACTGTTCTGGGAAAGTTGAGATCAAGTATTATATGGTCCCGGGATTCAACTCAACAGGACCTGCCAGTACTACTAATGGTACTCATACCGGAAATATATACCCTGGTTACACCAGGGTTAACCATGGGAAGTATGCAGTAAGCGATGTTCGAGCCCACATTGGGACGAGCAATCTTGTGTGGGATTACTTCTATACAACAGCAGGTGTCAGCTTTGGTACAAATAACTCTGCCATTGTTTCACAACTTCAACAAGTCTTTGATGCTGACTGGGATTCGGAATATGCTGTGCCAGTTGAAGAGTTGGGGGAAGGTAATGCCTTTTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

57.24

Weight (kDa)

6.76

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLDc_2 PF13091 105 - 217 1.4e-12 PLD-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014680)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1409
Acc36I ACCTGC 2 cut(s) 1285, 1409
AccB7I CCANNNNNTGG 3 cut(s) 507, 1017, 1039
AccII CGCG 2 cut(s) 167, 190
AciI CCGC 3 cut(s) 165, 167, 190
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 7 cut(s) 227, 938, 1009, 1163, 1285, 1297, 1435
AfiI CCNNNNNNNGG 8 cut(s) 184, 263, 507, 759, 779, 1017, 1039, 1377
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 6 cut(s) 841, 876, 1264, 1466, 1514, 1542
AhdI GACNNNNNGTC 1 cut(s) 559
AjiI CACGTC 1 cut(s) 986
AjnI CCWGG 6 cut(s) 148, 778, 859, 939, 1318, 1328
AleI CACNNNNGTG 2 cut(s) 315, 387
AluBI AGCT 6 cut(s) 221, 308, 897, 922, 1428, 1545
AluI AGCT 6 cut(s) 221, 308, 897, 922, 1428, 1545
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 7 cut(s) 23, 70, 199, 567, 623, 712, 785
AlwNI CAGNNNCTG 4 cut(s) 208, 830, 1165, 1277
Ama87I CYCGRG 2 cut(s) 385, 1255
AoxI GGCC 2 cut(s) 133, 437
ApeKI GCWGC 2 cut(s) 347, 1149
AspLEI GCGC 2 cut(s) 88, 190
AspS9I GGNCC 4 cut(s) 106, 438, 1252, 1274
AsuC2I CCSGG 3 cut(s) 132, 1256, 1257
AsuHPI GGTGA 2 cut(s) 302, 762
AvaI CYCGRG 2 cut(s) 385, 1255
AvaII GGWCC 3 cut(s) 106, 1252, 1274
BaeGI GKGCMC 1 cut(s) 1138
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BanII GRGCYC 2 cut(s) 310, 1372
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 334, 1161
BccI CCATC 2 cut(s) 147, 174
BciT130I CCWGG 6 cut(s) 150, 780, 861, 941, 1320, 1330
BciVI GTATCC 2 cut(s) 269, 803
BcnI CCSGG 3 cut(s) 132, 1256, 1257
BcoDI GTCTC 7 cut(s) 23, 70, 199, 567, 623, 712, 785
BfmI CTRYAG 1 cut(s) 978
BfuAI ACCTGC 2 cut(s) 1285, 1409
BfuI GTATCC 2 cut(s) 269, 803
BisI GCNGC 2 cut(s) 348, 1150
BlsI GCNGC 2 cut(s) 349, 1151
BmcAI AGTACT 2 cut(s) 227, 1285
Bme1390I CCNGG 9 cut(s) 132, 150, 780, 861, 941, 1256, 1257, 1320, 1330
Bme18I GGWCC 3 cut(s) 106, 1252, 1274
BmeRI GACNNNNNGTC 1 cut(s) 559
BmeT110I CYCGRG 2 cut(s) 385, 1255
BmgBI CACGTC 1 cut(s) 986
BmgT120I GGNCC 4 cut(s) 106, 438, 1252, 1274
BmiI GGNNCC 1 cut(s) 1254
BmrFI CCNGG 9 cut(s) 132, 150, 780, 861, 941, 1256, 1257, 1320, 1330
BmrI ACTGGG 1 cut(s) 1495
BmsI GCATC 3 cut(s) 334, 668, 1468
BmuI ACTGGG 1 cut(s) 1495
BpmI CTGGAG 3 cut(s) 285, 836, 900
BpuEI CTTGAG 2 cut(s) 54, 234
BpuMI CCSGG 3 cut(s) 132, 1256, 1257
BsaWI WCCGGW 1 cut(s) 1304
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 8 cut(s) 184, 263, 507, 759, 779, 1017, 1039, 1377
Bse1I ACTGG 7 cut(s) 213, 233, 560, 1022, 1281, 1490, 1508
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 6 cut(s) 150, 780, 861, 941, 1320, 1330
BseGI GGATG 4 cut(s) 175, 346, 1061, 1202
BseLI CCNNNNNNNGG 8 cut(s) 184, 263, 507, 759, 779, 1017, 1039, 1377
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 236, 705
BseNI ACTGG 7 cut(s) 213, 233, 560, 1022, 1281, 1490, 1508
BseRI GAGGAG 3 cut(s) 903, 1060, 1166
BseSI GKGCMC 1 cut(s) 1138
BseXI GCAGC 2 cut(s) 334, 1161
Bsh1236I CGCG 2 cut(s) 167, 190
BshFI GGCC 2 cut(s) 135, 439
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 2 cut(s) 385, 1255
BsiSI CCGG 3 cut(s) 132, 1256, 1305
BslFI GGGAC 6 cut(s) 131, 591, 1006, 1015, 1238, 1393
BslI CCNNNNNNNGG 8 cut(s) 184, 263, 507, 759, 779, 1017, 1039, 1377
BsmAI GTCTC 7 cut(s) 23, 70, 199, 567, 623, 712, 785
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 6 cut(s) 131, 591, 1006, 1015, 1238, 1393
BsnI GGCC 2 cut(s) 135, 439
BsoBI CYCGRG 2 cut(s) 385, 1255
Bsp1286I GDGCHC 3 cut(s) 310, 1138, 1372
Bsp143I GATC 3 cut(s) 517, 1156, 1236
Bsp19I CCATGG 2 cut(s) 1011, 1339
BspACI CCGC 3 cut(s) 165, 167, 190
BspANI GGCC 2 cut(s) 135, 439
BspCNI CTCAG 2 cut(s) 235, 706
BspFNI CGCG 2 cut(s) 167, 190
BspLI GGNNCC 1 cut(s) 1254
BspMI ACCTGC 2 cut(s) 1285, 1409
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 7 cut(s) 213, 233, 560, 1022, 1281, 1490, 1508
BssMI GATC 3 cut(s) 517, 1156, 1236
BssT1I CCWWGG 4 cut(s) 313, 336, 1011, 1339
Bst2UI CCWGG 6 cut(s) 150, 780, 861, 941, 1320, 1330
Bst4CI ACNGT 4 cut(s) 822, 997, 1111, 1220
Bst6I CTCTTC 1 cut(s) 1509
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 222, 467, 714
BstDSI CCRYGG 3 cut(s) 165, 1011, 1339
BstF5I GGATG 4 cut(s) 175, 346, 1061, 1202
BstFNI CGCG 2 cut(s) 167, 190
BstHHI GCGC 2 cut(s) 88, 190
BstKTI GATC 3 cut(s) 520, 1159, 1239
BstMAI GTCTC 7 cut(s) 23, 70, 199, 567, 623, 712, 785
BstMBI GATC 3 cut(s) 517, 1156, 1236
BstMWI GCNNNNNNNGC 2 cut(s) 1103, 1133
BstNI CCWGG 6 cut(s) 150, 780, 861, 941, 1320, 1330
BstNSI RCATGY 2 cut(s) 130, 530
BstSCI CCNGG 9 cut(s) 130, 148, 778, 859, 939, 1254, 1255, 1318, 1328
BstSFI CTRYAG 1 cut(s) 978
BstSLI GKGCMC 1 cut(s) 1138
BstUI CGCG 2 cut(s) 167, 190
BstV1I GCAGC 2 cut(s) 334, 1161
BstXI CCANNNNNNTGG 2 cut(s) 860, 1223
BsuI GTATCC 2 cut(s) 269, 803
BsuRI GGCC 2 cut(s) 135, 439
BtgI CCRYGG 3 cut(s) 165, 1011, 1339
BtgZI GCGATG 1 cut(s) 1374
BtrI CACGTC 1 cut(s) 986
BtsCI GGATG 4 cut(s) 175, 346, 1061, 1202
BtsIMutI CAGTG 3 cut(s) 710, 1116, 1216
BveI ACCTGC 2 cut(s) 1285, 1409
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 4 cut(s) 208, 830, 1165, 1277
CfoI GCGC 2 cut(s) 88, 190
Cfr13I GGNCC 4 cut(s) 106, 438, 1252, 1274
Cfr42I CCGCGG 1 cut(s) 168
Cfr9I CCCGGG 1 cut(s) 1255
Csp6I GTAC 7 cut(s) 226, 937, 1008, 1162, 1284, 1296, 1434
CviAII CATG 9 cut(s) 99, 127, 292, 497, 527, 800, 957, 1012, 1340
CviQI GTAC 7 cut(s) 226, 937, 1008, 1162, 1284, 1296, 1434
DdeI CTNAG 3 cut(s) 222, 467, 714
DpnI GATC 3 cut(s) 519, 1158, 1238
DpnII GATC 3 cut(s) 517, 1156, 1236
DriI GACNNNNNGTC 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 1509
Eam1105I GACNNNNNGTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 1509
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 4 cut(s) 313, 336, 1011, 1339
Eco24I GRGCYC 2 cut(s) 310, 1372
Eco32I GATATC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 106, 1252, 1274
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 385, 1255
EcoICRI GAGCTC 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 1274
EcoRII CCWGG 6 cut(s) 148, 778, 859, 939, 1318, 1328
EcoRV GATATC 1 cut(s) 513
EcoT14I CCWWGG 4 cut(s) 313, 336, 1011, 1339
EcoT38I GRGCYC 2 cut(s) 310, 1372
ErhI CCWWGG 4 cut(s) 313, 336, 1011, 1339
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 9 cut(s) 102, 130, 295, 500, 530, 803, 960, 1015, 1343
FaqI GGGAC 6 cut(s) 131, 591, 1006, 1015, 1238, 1393
FatI CATG 9 cut(s) 98, 126, 291, 496, 526, 799, 956, 1011, 1339
Fnu4HI GCNGC 2 cut(s) 348, 1150
FokI GGATG 4 cut(s) 182, 353, 1048, 1189
FriOI GRGCYC 2 cut(s) 310, 1372
Fsp4HI GCNGC 2 cut(s) 348, 1150
GlaI GCGC 2 cut(s) 87, 189
GluI GCNGC 2 cut(s) 348, 1150
GsuI CTGGAG 3 cut(s) 285, 836, 900
HaeIII GGCC 2 cut(s) 135, 439
HapII CCGG 3 cut(s) 132, 1256, 1305
HhaI GCGC 2 cut(s) 88, 190
Hin1II CATG 9 cut(s) 102, 130, 295, 500, 530, 803, 960, 1015, 1343
Hin6I GCGC 2 cut(s) 86, 188
HinP1I GCGC 2 cut(s) 86, 188
HincII GTYRAC 1 cut(s) 1336
HindII GTYRAC 1 cut(s) 1336
HinfI GANTC 6 cut(s) 588, 749, 856, 872, 1260, 1490
HpaI GTTAAC 1 cut(s) 1336
HpaII CCGG 3 cut(s) 132, 1256, 1305
HphI GGTGA 2 cut(s) 302, 762
Hpy166II GTNNAC 2 cut(s) 770, 1336
Hpy188I TCNGA 7 cut(s) 179, 517, 697, 826, 1084, 1207, 1495
Hpy188III TCNNGA 6 cut(s) 251, 264, 398, 432, 853, 917
Hpy8I GTNNAC 2 cut(s) 770, 1336
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 426, 429, 1520
HpyCH4III ACNGT 4 cut(s) 822, 997, 1111, 1220
HpyCH4IV ACGT 1 cut(s) 985
HpyCH4V TGCA 8 cut(s) 93, 545, 659, 883, 1076, 1097, 1197, 1352
HpyF10VI GCNNNNNNNGC 2 cut(s) 1103, 1133
HpyF3I CTNAG 3 cut(s) 222, 467, 714
HpySE526I ACGT 1 cut(s) 985
Hsp92II CATG 9 cut(s) 102, 130, 295, 500, 530, 803, 960, 1015, 1343
HspAI GCGC 2 cut(s) 86, 188
KspAI GTTAAC 1 cut(s) 1336
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 3 cut(s) 517, 1156, 1236
LmnI GCTCC 3 cut(s) 305, 916, 1042
Lsp1109I GCAGC 2 cut(s) 334, 1161
LweI GCATC 3 cut(s) 334, 668, 1468
MaeII ACGT 1 cut(s) 985
MaeIII GTNAC 3 cut(s) 454, 462, 1322
MalI GATC 3 cut(s) 519, 1158, 1238
MboI GATC 3 cut(s) 517, 1156, 1236
MboII GAAGA 2 cut(s) 460, 1526
MhlI GDGCHC 3 cut(s) 310, 1138, 1372
MluCI AATT 3 cut(s) 1034, 1050, 1198
MlyI GAGTC 1 cut(s) 850
MmeI TCCRAC 1 cut(s) 565
MseI TTAA 2 cut(s) 666, 1335
MslI CAYNNNNRTG 3 cut(s) 125, 315, 387
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 132, 1256, 1305
MspR9I CCNGG 9 cut(s) 132, 150, 780, 861, 941, 1256, 1257, 1320, 1330
MvaI CCWGG 6 cut(s) 150, 780, 861, 941, 1320, 1330
MvnI CGCG 2 cut(s) 167, 190
MwoI GCNNNNNNNGC 2 cut(s) 1103, 1133
NciI CCSGG 3 cut(s) 132, 1256, 1257
NcoI CCATGG 2 cut(s) 1011, 1339
NdeII GATC 3 cut(s) 517, 1156, 1236
NlaIII CATG 9 cut(s) 102, 130, 295, 500, 530, 803, 960, 1015, 1343
NlaIV GGNNCC 1 cut(s) 1254
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 2 cut(s) 130, 530
OliI CACNNNNGTG 2 cut(s) 315, 387
PaqCI CACCTGC 1 cut(s) 1409
PasI CCCWGGG 1 cut(s) 779
PciI ACATGT 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 5 cut(s) 588, 749, 872, 1260, 1490
PflMI CCANNNNNTGG 3 cut(s) 507, 1017, 1039
PfoI TCCNGGA 1 cut(s) 859
PkrI GCNGC 2 cut(s) 349, 1151
PleI GAGTC 1 cut(s) 850
PpsI GAGTC 1 cut(s) 850
PpuMI RGGWCCY 1 cut(s) 1274
PscI ACATGT 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 1274
Psp6I CCWGG 6 cut(s) 148, 778, 859, 939, 1318, 1328
PspGI CCWGG 6 cut(s) 148, 778, 859, 939, 1318, 1328
PspN4I GGNNCC 1 cut(s) 1254
PspPI GGNCC 4 cut(s) 106, 438, 1252, 1274
PspPPI RGGWCCY 1 cut(s) 1274
PsrI GAACNNNNNNTAC 2 cut(s) 1347, 1379
PstNI CAGNNNCTG 4 cut(s) 208, 830, 1165, 1277
RsaI GTAC 7 cut(s) 227, 938, 1009, 1163, 1285, 1297, 1435
RsaNI GTAC 7 cut(s) 226, 937, 1008, 1162, 1284, 1296, 1434
RseI CAYNNNNRTG 3 cut(s) 125, 315, 387
SacI GAGCTC 1 cut(s) 310
SacII CCGCGG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 666, 1335
SatI GCNGC 2 cut(s) 348, 1150
Sau3AI GATC 3 cut(s) 517, 1156, 1236
Sau96I GGNCC 4 cut(s) 106, 438, 1252, 1274
ScaI AGTACT 2 cut(s) 227, 1285
SchI GAGTC 1 cut(s) 850
ScrFI CCNGG 9 cut(s) 132, 150, 780, 861, 941, 1256, 1257, 1320, 1330
SduI GDGCHC 3 cut(s) 310, 1138, 1372
SfaNI GCATC 3 cut(s) 334, 668, 1468
SfcI CTRYAG 1 cut(s) 978
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SinI GGWCC 3 cut(s) 106, 1252, 1274
SmaI CCCGGG 1 cut(s) 1257
SmiMI CAYNNNNRTG 3 cut(s) 125, 315, 387
SmlI CTYRAG 2 cut(s) 69, 249
SmoI CTYRAG 2 cut(s) 69, 249
Sse9I AATT 3 cut(s) 1034, 1050, 1198
SsiI CCGC 3 cut(s) 165, 167, 190
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 9 cut(s) 130, 148, 778, 859, 939, 1254, 1255, 1318, 1328
StyI CCWWGG 4 cut(s) 313, 336, 1011, 1339
TaaI ACNGT 4 cut(s) 822, 997, 1111, 1220
TaiI ACGT 1 cut(s) 988
TaqI TCGA 1 cut(s) 1366
TasI AATT 3 cut(s) 1034, 1050, 1198
TatI WGTACW 2 cut(s) 225, 1283
TfiI GAWTC 5 cut(s) 588, 749, 872, 1260, 1490
Tru1I TTAA 2 cut(s) 666, 1335
Tru9I TTAA 2 cut(s) 666, 1335
TscAI CASTG 3 cut(s) 710, 1116, 1223
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 2 cut(s) 347, 1149
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 17, 963, 1191
TspMI CCCGGG 1 cut(s) 1255
TspRI CASTG 3 cut(s) 710, 1116, 1223
Van91I CCANNNNNTGG 3 cut(s) 507, 1017, 1039
VpaK11BI GGWCC 3 cut(s) 106, 1252, 1274
XceI RCATGY 2 cut(s) 130, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmaI CCCGGG 1 cut(s) 1255
ZrmI AGTACT 2 cut(s) 227, 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.