Rh6AG399900

phospholipase d

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
59721148 .. 59723574
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG399900.1

Sequence Viewer

Length: 1554 bp
ATGAAAGTCATTCACAGTCGCATTATCGTCGTCATCGTTTGGGTTTTAGTCAACCTTTCTTTGCCACCCGTCTCTGAATGTTCAGGTTCGGCGAAATGCAAAGCATGGCTGGTCCAATCAATCCCCACCGACATGCCGGGTCTCCGTCGTGTCCCTGGTGTCCTCGCCACCGCGGATGTGTTCCGGTGGCTGGCGCGGAACTCATCAGAGAGACTGGACATAATTGCTCAGTACTGGCAGTTTGAAGCCAATCCTAAAGACCCTCAATCTGGAGATTTTGGATACTCAAAACAGGACATGAAGAGATTTGGAGCTCACCAAGGTGCTTCCGTTTATGGCGCCATAGATGATGCTGCTAATCGCAATCTTACTATCAGGCTACTATCACACTCAGGTGTATATCCTGACTACACCAAAGAGCCTTCCAAACTTGCTTCAGGAAGGCCCAATGTGAAGAATGTCACTTTGTTACTAAGTGAATGGTGGGGTTCTGGCATAGTCCATGCCAAAGTTTGGATATCAGATCGGCGAGATGTATATATTGGGTCTGCAAACAATGACTGGAAATCTCTCACACAAGTCAAGGAAGTTGGAATTTATCTTACTGGTTGTCCAAAAATAGCGAGAAAGGTTGAGACCTACTTTGACAACCTGTGGAAACTTGCATCTCTTAATTCTACAGCTTACACAACAAATGTATCAGATAAACAGTGGCAGACTGAGAGACAAGTTCCTTGCTGGTCGCATTTCGTGGATTCTAAAGCAAGGTGTAGTTCACCTCTCCCTGGGATTGTGGAGACTGACCATGTAGCAGGATACCCCATACTGTCAGACCCTCATATGTTCAAAATGCAGCTCCAGACTCCTGGACATAATGATTCAAGTTTGCAACCCCAATCCAGCTATCTATCTTTTGCTCCTCCAGAGCTGTCATTTGGCAAGTACCAGGCAGATGAACAAGCATGGATAGAGACTATTAAATCTGTAGGAAGTGGAGGGACCGTCAGGATTAGTACCATGGACTGGCTTGGTCAGTCCCAGTTTATGAAGCATACAATTTATTGGGCATCCCTCTCCTCTGCAATATCAGAGGTTGTGTTTGCAAAGAATGCAACAGTGAAGTTATTGGTAGCACACTGGGCACATTTTATCAACAGCACAGATCAATACCTGAAATCTCTCCTCTACTCTAATGTTCTCTGCAATTCATCCGAGTATAACCACTGTTCTGGGAAAGTTGAGATCAAGTATTATATGGTCCCAGGTTTCAACTTGACAGGACCTGCCAGAACTGGCAATGGTACTCGTACTGGAAATATATACCCTGGTTACACCAGGGTTAACCATGGCAAGTATGCAGTAAGCGATGTTCGAGCCCATATTGGGACGAGCAATCTTGTGTGGGATTACTTTTATACAACAGCGGGTGTCAGCTTTGGTACAAATAACTCTGCCATTGTTTCACAACTTCAACAAGTCTTTGATGCTGACTGGGATTCGGAATATGCTTTGCCAGTTGAAGAGTTGGGGGAAGGTAATGCTTTTTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

57.55

Weight (kDa)

8.03

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLDc_2 PF13091 109 - 219 1.7e-10 PLD-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014680)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1291
AccB1I GGYRCC 1 cut(s) 338
AccB7I CCANNNNNTGG 2 cut(s) 513, 1023
AccII CGCG 2 cut(s) 173, 196
AciI CCGC 4 cut(s) 171, 173, 196, 1424
AcsI RAATTY 1 cut(s) 594
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 6 cut(s) 233, 944, 1015, 1303, 1309, 1441
AfiI CCNNNNNNNGG 6 cut(s) 190, 269, 513, 785, 1023, 1383
AgsI TTSAA 7 cut(s) 245, 847, 882, 1270, 1472, 1520, 1548
AjnI CCWGG 7 cut(s) 154, 784, 865, 945, 1261, 1324, 1334
AleI CACNNNNGTG 2 cut(s) 321, 393
AluBI AGCT 7 cut(s) 314, 683, 856, 903, 928, 1434, 1551
AluI AGCT 7 cut(s) 314, 683, 856, 903, 928, 1434, 1551
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 7 cut(s) 76, 146, 205, 629, 718, 791, 965
AlwNI CAGNNNCTG 1 cut(s) 1283
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 353, 853
ApoI RAATTY 1 cut(s) 594
AspLEI GCGC 2 cut(s) 196, 341
AspS9I GGNCC 5 cut(s) 112, 444, 999, 1258, 1280
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 308, 768
AvaII GGWCC 4 cut(s) 112, 999, 1258, 1280
BaeGI GKGCMC 1 cut(s) 1144
BaeI ACNNNNGTAYC 2 cut(s) 681, 714
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 316, 1378
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 340, 865
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 7 cut(s) 156, 786, 867, 947, 1263, 1326, 1336
BciVI GTATCC 2 cut(s) 275, 809
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 7 cut(s) 76, 146, 205, 629, 718, 791, 965
BfmI CTRYAG 2 cut(s) 678, 984
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 1291
BfuI GTATCC 2 cut(s) 275, 809
BisI GCNGC 2 cut(s) 354, 854
BlsI GCNGC 2 cut(s) 355, 855
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 8 cut(s) 138, 156, 786, 867, 947, 1263, 1326, 1336
Bme18I GGWCC 4 cut(s) 112, 999, 1258, 1280
BmgT120I GGNCC 5 cut(s) 112, 444, 999, 1258, 1280
BmiI GGNNCC 3 cut(s) 340, 1000, 1260
BmrFI CCNGG 8 cut(s) 138, 156, 786, 867, 947, 1263, 1326, 1336
BmrI ACTGGG 3 cut(s) 1033, 1147, 1501
BmsI GCATC 4 cut(s) 340, 674, 1076, 1474
BmuI ACTGGG 3 cut(s) 1033, 1147, 1501
BpmI CTGGAG 3 cut(s) 291, 842, 906
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 2 cut(s) 146, 629
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 987, 1017
Bsc4I CCNNNNNNNGG 6 cut(s) 190, 269, 513, 785, 1023, 1383
Bse3DI GCAATG 1 cut(s) 1303
BseBI CCWGG 7 cut(s) 156, 786, 867, 947, 1263, 1326, 1336
BseGI GGATG 3 cut(s) 181, 1067, 1208
BseLI CCNNNNNNNGG 6 cut(s) 190, 269, 513, 785, 1023, 1383
BseMI GCAATG 1 cut(s) 1303
BseMII CTCAG 3 cut(s) 242, 405, 711
BseRI GAGGAG 3 cut(s) 909, 1066, 1172
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 2 cut(s) 340, 865
Bsh1236I CGCG 2 cut(s) 173, 196
BshFI GGCC 1 cut(s) 445
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 2 cut(s) 137, 184
BslFI GGGAC 5 cut(s) 137, 1012, 1021, 1244, 1399
BslI CCNNNNNNNGG 6 cut(s) 190, 269, 513, 785, 1023, 1383
BsmAI GTCTC 7 cut(s) 76, 146, 205, 629, 718, 791, 965
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 5 cut(s) 137, 1012, 1021, 1244, 1399
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 2 cut(s) 146, 629
Bsp1286I GDGCHC 3 cut(s) 316, 1144, 1378
Bsp143I GATC 3 cut(s) 523, 1162, 1242
Bsp19I CCATGG 2 cut(s) 1017, 1345
BspACI CCGC 4 cut(s) 171, 173, 196, 1424
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 3 cut(s) 241, 404, 712
BspFNI CGCG 2 cut(s) 173, 196
BspLI GGNNCC 3 cut(s) 340, 1000, 1260
BspMI ACCTGC 1 cut(s) 1291
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 2 cut(s) 146, 629
BsrDI GCAATG 1 cut(s) 1303
BssMI GATC 3 cut(s) 523, 1162, 1242
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 3 cut(s) 319, 1017, 1345
Bst2UI CCWGG 7 cut(s) 156, 786, 867, 947, 1263, 1326, 1336
Bst4CI ACNGT 6 cut(s) 17, 711, 828, 1003, 1117, 1226
Bst6I CTCTTC 2 cut(s) 296, 1515
BstACI GRCGYC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 4 cut(s) 228, 391, 473, 720
BstDSI CCRYGG 3 cut(s) 171, 1017, 1345
BstF5I GGATG 3 cut(s) 181, 1067, 1208
BstFNI CGCG 2 cut(s) 173, 196
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 2 cut(s) 196, 341
BstKTI GATC 3 cut(s) 526, 1165, 1245
BstMAI GTCTC 7 cut(s) 76, 146, 205, 629, 718, 791, 965
BstMBI GATC 3 cut(s) 523, 1162, 1242
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1139
BstNI CCWGG 7 cut(s) 156, 786, 867, 947, 1263, 1326, 1336
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 8 cut(s) 136, 154, 784, 865, 945, 1261, 1324, 1334
BstSFI CTRYAG 2 cut(s) 678, 984
BstSLI GKGCMC 1 cut(s) 1144
BstUI CGCG 2 cut(s) 173, 196
BstV1I GCAGC 2 cut(s) 340, 865
BstXI CCANNNNNNTGG 2 cut(s) 866, 1229
BsuI GTATCC 2 cut(s) 275, 809
BsuRI GGCC 1 cut(s) 445
BtgI CCRYGG 3 cut(s) 171, 1017, 1345
BtgZI GCGATG 1 cut(s) 1380
BtsCI GGATG 3 cut(s) 181, 1067, 1208
BtsIMutI CAGTG 4 cut(s) 716, 1122, 1135, 1222
BveI ACCTGC 1 cut(s) 1291
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 1283
CfoI GCGC 2 cut(s) 196, 341
Cfr13I GGNCC 5 cut(s) 112, 444, 999, 1258, 1280
Cfr42I CCGCGG 1 cut(s) 174
Csp6I GTAC 6 cut(s) 232, 943, 1014, 1302, 1308, 1440
CviAII CATG 8 cut(s) 105, 133, 298, 503, 806, 963, 1018, 1346
CviQI GTAC 6 cut(s) 232, 943, 1014, 1302, 1308, 1440
DdeI CTNAG 4 cut(s) 228, 391, 473, 720
DinI GGCGCC 1 cut(s) 340
DpnI GATC 3 cut(s) 525, 1164, 1244
DpnII GATC 3 cut(s) 523, 1162, 1242
Eam1104I CTCTTC 2 cut(s) 296, 1515
EarI CTCTTC 2 cut(s) 296, 1515
Ecl136II GAGCTC 1 cut(s) 314
Eco130I CCWWGG 3 cut(s) 319, 1017, 1345
Eco24I GRGCYC 2 cut(s) 316, 1378
Eco31I GGTCTC 2 cut(s) 146, 629
Eco32I GATATC 1 cut(s) 519
Eco47I GGWCC 4 cut(s) 112, 999, 1258, 1280
Eco53kI GAGCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 1280
EcoRII CCWGG 7 cut(s) 154, 784, 865, 945, 1261, 1324, 1334
EcoRV GATATC 1 cut(s) 519
EcoT14I CCWWGG 3 cut(s) 319, 1017, 1345
EcoT38I GRGCYC 2 cut(s) 316, 1378
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 3 cut(s) 319, 1017, 1345
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 8 cut(s) 108, 136, 301, 506, 809, 966, 1021, 1349
FaqI GGGAC 5 cut(s) 137, 1012, 1021, 1244, 1399
FatI CATG 8 cut(s) 104, 132, 297, 502, 805, 962, 1017, 1345
FauI CCCGC 1 cut(s) 1417
FauNDI CATATG 1 cut(s) 840
Fnu4HI GCNGC 2 cut(s) 354, 854
FokI GGATG 3 cut(s) 188, 1054, 1195
FriOI GRGCYC 2 cut(s) 316, 1378
Fsp4HI GCNGC 2 cut(s) 354, 854
GlaI GCGC 2 cut(s) 195, 340
GluI GCNGC 2 cut(s) 354, 854
GsuI CTGGAG 3 cut(s) 291, 842, 906
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 445
HapII CCGG 2 cut(s) 137, 184
HhaI GCGC 2 cut(s) 196, 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 8 cut(s) 108, 136, 301, 506, 809, 966, 1021, 1349
Hin6I GCGC 2 cut(s) 194, 339
HinP1I GCGC 2 cut(s) 194, 339
HincII GTYRAC 2 cut(s) 52, 1342
HindII GTYRAC 2 cut(s) 52, 1342
HinfI GANTC 4 cut(s) 755, 862, 878, 1496
HpaI GTTAAC 1 cut(s) 1342
HpaII CCGG 2 cut(s) 137, 184
HphI GGTGA 2 cut(s) 308, 768
Hpy166II GTNNAC 3 cut(s) 52, 776, 1342
Hpy188I TCNGA 8 cut(s) 76, 208, 523, 703, 832, 1090, 1213, 1501
Hpy188III TCNNGA 6 cut(s) 270, 404, 438, 859, 923, 1006
Hpy8I GTNNAC 3 cut(s) 52, 776, 1342
Hpy99I CGWCG 2 cut(s) 32, 150
HpyAV CCTTC 3 cut(s) 432, 435, 1526
HpyCH4III ACNGT 6 cut(s) 17, 711, 828, 1003, 1117, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1139
HpyF3I CTNAG 4 cut(s) 228, 391, 473, 720
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 8 cut(s) 108, 136, 301, 506, 809, 966, 1021, 1349
HspAI GCGC 2 cut(s) 194, 339
KasI GGCGCC 1 cut(s) 338
KspAI GTTAAC 1 cut(s) 1342
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 3 cut(s) 523, 1162, 1242
LmnI GCTCC 3 cut(s) 311, 861, 922
Lsp1109I GCAGC 2 cut(s) 340, 865
LweI GCATC 4 cut(s) 340, 674, 1076, 1474
MaeIII GTNAC 3 cut(s) 460, 468, 1328
MalI GATC 3 cut(s) 525, 1164, 1244
MboI GATC 3 cut(s) 523, 1162, 1242
MboII GAAGA 3 cut(s) 313, 466, 1532
MhlI GDGCHC 3 cut(s) 316, 1144, 1378
MluCI AATT 5 cut(s) 222, 594, 673, 1056, 1204
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 1 cut(s) 571
MseI TTAA 3 cut(s) 672, 978, 1341
MslI CAYNNNNRTG 3 cut(s) 131, 321, 393
MspA1I CMGCKG 2 cut(s) 173, 1424
MspI CCGG 2 cut(s) 137, 184
MspR9I CCNGG 8 cut(s) 138, 156, 786, 867, 947, 1263, 1326, 1336
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 7 cut(s) 156, 786, 867, 947, 1263, 1326, 1336
MvnI CGCG 2 cut(s) 173, 196
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1139
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 2 cut(s) 1017, 1345
NdeI CATATG 1 cut(s) 840
NdeII GATC 3 cut(s) 523, 1162, 1242
NlaIII CATG 8 cut(s) 108, 136, 301, 506, 809, 966, 1021, 1349
NlaIV GGNNCC 3 cut(s) 340, 1000, 1260
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 136
OliI CACNNNNGTG 2 cut(s) 321, 393
PasI CCCWGGG 1 cut(s) 785
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 3 cut(s) 755, 878, 1496
PflMI CCANNNNNTGG 2 cut(s) 513, 1023
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 2 cut(s) 355, 855
PleI GAGTC 1 cut(s) 856
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 856
PpuMI RGGWCCY 1 cut(s) 1280
Psp124BI GAGCTC 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 1280
Psp6I CCWGG 7 cut(s) 154, 784, 865, 945, 1261, 1324, 1334
PspGI CCWGG 7 cut(s) 154, 784, 865, 945, 1261, 1324, 1334
PspN4I GGNNCC 3 cut(s) 340, 1000, 1260
PspPI GGNCC 5 cut(s) 112, 444, 999, 1258, 1280
PspPPI RGGWCCY 1 cut(s) 1280
PsrI GAACNNNNNNTAC 2 cut(s) 1353, 1385
PstNI CAGNNNCTG 1 cut(s) 1283
RsaI GTAC 6 cut(s) 233, 944, 1015, 1303, 1309, 1441
RsaNI GTAC 6 cut(s) 232, 943, 1014, 1302, 1308, 1440
RseI CAYNNNNRTG 3 cut(s) 131, 321, 393
SacI GAGCTC 1 cut(s) 316
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 672, 978, 1341
SatI GCNGC 2 cut(s) 354, 854
Sau3AI GATC 3 cut(s) 523, 1162, 1242
Sau96I GGNCC 5 cut(s) 112, 444, 999, 1258, 1280
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 856
ScrFI CCNGG 8 cut(s) 138, 156, 786, 867, 947, 1263, 1326, 1336
SduI GDGCHC 3 cut(s) 316, 1144, 1378
SfaNI GCATC 4 cut(s) 340, 674, 1076, 1474
SfcI CTRYAG 2 cut(s) 678, 984
SfoI GGCGCC 1 cut(s) 340
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 4 cut(s) 112, 999, 1258, 1280
SmiMI CAYNNNNRTG 3 cut(s) 131, 321, 393
Sse9I AATT 5 cut(s) 222, 594, 673, 1056, 1204
SsiI CCGC 4 cut(s) 171, 173, 196, 1424
SspDI GGCGCC 1 cut(s) 338
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 8 cut(s) 136, 154, 784, 865, 945, 1261, 1324, 1334
StyI CCWWGG 3 cut(s) 319, 1017, 1345
TaaI ACNGT 6 cut(s) 17, 711, 828, 1003, 1117, 1226
TaqI TCGA 1 cut(s) 1372
TasI AATT 5 cut(s) 222, 594, 673, 1056, 1204
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 3 cut(s) 755, 878, 1496
Tru1I TTAA 3 cut(s) 672, 978, 1341
Tru9I TTAA 3 cut(s) 672, 978, 1341
TscAI CASTG 4 cut(s) 716, 1122, 1142, 1229
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 353, 853
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 5 cut(s) 17, 314, 969, 1061, 1197
TspGWI ACGGA 2 cut(s) 134, 319
TspRI CASTG 4 cut(s) 716, 1122, 1142, 1229
Van91I CCANNNNNTGG 2 cut(s) 513, 1023
VpaK11BI GGWCC 4 cut(s) 112, 999, 1258, 1280
XapI RAATTY 1 cut(s) 594
XceI RCATGY 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.