Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Forward (+)

43772909 .. 43779383

Gene Structure 6475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCACCAAATTGCAGATATTTACAAGATTGACCATGGCTTCAACTCCCGCCTCTTCGTTCCAATCCCCGCCTTCTTCTTCTTCTTCTTCTTCATCATCCTCCACCACCCTCTCCATGGTCAGGAGACCTCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTGAAGTCATTAGGGTTGCTCCTTCCAATAAGCGACATCATTCGAGACAACGTGGAGGTGCTCTCGGTGCCCGTATGAACCTTTTTGACCGGTTTTCTAGAGTTGTCAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAGGCCACAGCACAGGTATTGGCTTCTCAAAAACGATTGGAAAATAAGTACAAAGCTGCACAACAAGCTTCTGAGGACTGGTATCGAAAAGCACAATTAGCTCTTCAGAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAATTCTTTGAGAACGCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTGTCTAATACAAAGCTTTTAGAGAGCAAGATACAAGAGGCAAGATCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCCCTTTCCGCTTTTGACAAGATGGAGGAGAAAGTCCTGGCAATGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGACGATCTGGAAGGAAAGTTTGCGATGCTAGAGAGCTCTTCTGTTGATGATGATCTTGCAAGCTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGATCTTCCACCCGGAAGAACTGTTACTCCCAGTTCAAACAAGGCATATCCATTCAAGGATTCTGAAATTGAAATGGAGCTTAATGAATTGAGACGGAAAGCGCAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

343

Amino Acids

37.76

Weight (kDa)

9.53

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	85 - 298	1.7e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	1 cut(s)	675
AciI	CCGC	5 cut(s)	51, 71, 156, 542, 747
AclWI	GGATC	2 cut(s)	314, 510
AcoI	YGGCCR	2 cut(s)	3, 805
AcuI	CTGAAG	2 cut(s)	470, 542
AcvI	CACGTG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	118, 123, 781
AgeI	ACCGGT	1 cut(s)	264
AjnI	CCWGG	1 cut(s)	774
AloI	GAACNNNNNNTCC	2 cut(s)	928, 960
Alw21I	GWGCWC	3 cut(s)	169, 238, 857
Alw26I	GTCTC	3 cut(s)	121, 214, 1003
AlwI	GGATC	2 cut(s)	314, 510
AoxI	GGCC	3 cut(s)	3, 384, 805
ApeKI	GCWGC	1 cut(s)	437
AsiGI	ACCGGT	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	677, 1021
AsuC2I	CCSGG	1 cut(s)	930
BaeGI	GKGCMC	2 cut(s)	247, 742
BalI	TGGCCA	2 cut(s)	5, 807
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	169, 857
BarI	GAAGNNNNNNTAC	2 cut(s)	925, 957
BbrPI	CACGTG	1 cut(s)	512
Bbv12I	GWGCWC	3 cut(s)	169, 238, 857
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	706, 754
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	776
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	3 cut(s)	121, 214, 1003
BfaI	CTAG	2 cut(s)	273, 848
BfmI	CTRYAG	1 cut(s)	816
BglII	AGATCT	1 cut(s)	919
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	776, 930
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	776, 930
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	366, 834
BmuI	ACTGGG	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpuMI	CCSGG	1 cut(s)	930
BsaAI	YACGTR	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	36, 117
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	928, 958
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 123, 781
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	3 cut(s)	464, 808, 948
Bse3DI	GCAATG	1 cut(s)	786
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	36, 117
BseGI	GGATG	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	118, 123, 781
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	3 cut(s)	315, 444, 692
BseNI	ACTGG	3 cut(s)	464, 808, 948
BseRI	GAGGAG	2 cut(s)	512, 779
BseSI	GKGCMC	2 cut(s)	247, 742
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	5, 386, 807
BshNI	GGYRCC	1 cut(s)	242
BshTI	ACCGGT	1 cut(s)	264
BsiHKAI	GWGCWC	3 cut(s)	169, 238, 857
BsiSI	CCGG	2 cut(s)	265, 930
BslI	CCNNNNNNNGG	3 cut(s)	118, 123, 781
BsmAI	GTCTC	3 cut(s)	121, 214, 1003
BsmBI	CGTCTC	1 cut(s)	1003
BsnI	GGCC	3 cut(s)	5, 386, 807
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	5 cut(s)	169, 238, 247, 742, 857
Bsp143I	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
Bsp19I	CCATGG	2 cut(s)	36, 117
BspACI	CCGC	5 cut(s)	51, 71, 156, 542, 747
BspANI	GGCC	3 cut(s)	5, 386, 807
BspCNI	CTCAG	3 cut(s)	316, 445, 691
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	314, 510
BspQI	GCTCTTC	2 cut(s)	489, 862
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	464, 808, 948
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	36, 117
BssMI	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	36, 117
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	897, 940
Bst6I	CTCTTC	4 cut(s)	61, 489, 518, 862
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	342, 673, 880
BstDEI	CTNAG	3 cut(s)	324, 453, 678
BstDSI	CCRYGG	2 cut(s)	36, 117
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	675
BstHHI	GCGC	2 cut(s)	677, 1021
BstKTI	GATC	7 cut(s)	322, 505, 577, 650, 826, 874, 922
BstMAI	GTCTC	3 cut(s)	121, 214, 1003
BstMBI	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 446, 479, 515, 548, 683, 692, 746
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	774, 928
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	2 cut(s)	247, 742
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	3 cut(s)	319, 502, 919
BstYI	RGATCY	3 cut(s)	319, 502, 919
BsuRI	GGCC	3 cut(s)	5, 386, 807
BtgI	CCRYGG	2 cut(s)	36, 117
BtgZI	GCGATG	1 cut(s)	857
BtsCI	GGATG	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	342, 673, 880
CfoI	GCGC	2 cut(s)	677, 1021
Cfr10I	RCCGGY	1 cut(s)	264
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	430
CspAI	ACCGGT	1 cut(s)	264
CviAII	CATG	2 cut(s)	37, 118
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	324, 453, 678
DpnI	GATC	7 cut(s)	321, 504, 576, 649, 825, 873, 921
DpnII	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
EaeI	YGGCCR	2 cut(s)	3, 805
Eam1104I	CTCTTC	4 cut(s)	61, 489, 518, 862
EarI	CTCTTC	4 cut(s)	61, 489, 518, 862
EciI	GGCGGA	1 cut(s)	171
Ecl136II	GAGCTC	2 cut(s)	167, 855
Eco130I	CCWWGG	2 cut(s)	36, 117
Eco24I	GRGCYC	2 cut(s)	169, 857
Eco31I	GGTCTC	1 cut(s)	121
Eco53kI	GAGCTC	2 cut(s)	167, 855
Eco57I	CTGAAG	2 cut(s)	470, 542
Eco72I	CACGTG	1 cut(s)	512
EcoICRI	GAGCTC	2 cut(s)	167, 855
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	36, 117
EcoT38I	GRGCYC	2 cut(s)	169, 857
ErhI	CCWWGG	2 cut(s)	36, 117
Esp3I	CGTCTC	1 cut(s)	1003
FaeI	CATG	2 cut(s)	40, 121
FaiI	YATR	7 cut(s)	38, 119, 251, 289, 291, 305, 964
FalI	AAGNNNNNCTT	4 cut(s)	333, 365, 906, 938
FatI	CATG	2 cut(s)	36, 117
FauI	CCCGC	2 cut(s)	58, 78
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	2 cut(s)	169, 857
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	273, 848
GlaI	GCGC	2 cut(s)	676, 1020
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	5, 386, 807
HapII	CCGG	2 cut(s)	265, 930
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	677, 1021
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	40, 121
Hin6I	GCGC	2 cut(s)	675, 1019
HinP1I	GCGC	2 cut(s)	675, 1019
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	3 cut(s)	447, 617, 880
HinfI	GANTC	2 cut(s)	785, 977
HpaI	GTTAAC	1 cut(s)	813
HpaII	CCGG	2 cut(s)	265, 930
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	4 cut(s)	454, 489, 522, 982
Hpy188III	TCNNGA	7 cut(s)	124, 136, 219, 273, 323, 350, 827
Hpy8I	GTNNAC	1 cut(s)	813
Hpy99I	CGWCG	2 cut(s)	142, 145
HpyAV	CCTTC	3 cut(s)	84, 207, 824
HpyCH4III	ACNGT	2 cut(s)	897, 940
HpyCH4IV	ACGT	3 cut(s)	140, 226, 511
HpyCH4V	TGCA	7 cut(s)	16, 293, 299, 440, 509, 686, 878
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 446, 479, 515, 548, 683, 692, 746
HpyF3I	CTNAG	3 cut(s)	324, 453, 678
HpySE526I	ACGT	3 cut(s)	140, 226, 511
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	40, 121
HspAI	GCGC	2 cut(s)	675, 1019
Ksp22I	TGATCA	1 cut(s)	574
KspAI	GTTAAC	1 cut(s)	813
Kzo9I	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
LguI	GCTCTTC	2 cut(s)	489, 862
LmnI	GCTCC	4 cut(s)	164, 199, 337, 994
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	2 cut(s)	366, 834
MaeI	CTAG	2 cut(s)	273, 848
MaeII	ACGT	3 cut(s)	140, 226, 511
MaeIII	GTNAC	1 cut(s)	940
MalI	GATC	7 cut(s)	321, 504, 576, 649, 825, 873, 921
MboI	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
MflI	RGATCY	3 cut(s)	319, 502, 919
MhlI	GDGCHC	5 cut(s)	169, 238, 247, 742, 857
MlsI	TGGCCA	2 cut(s)	5, 807
MluCI	AATT	5 cut(s)	11, 476, 553, 984, 1004
MluNI	TGGCCA	2 cut(s)	5, 807
Mox20I	TGGCCA	2 cut(s)	5, 807
MscI	TGGCCA	2 cut(s)	5, 807
MseI	TTAA	2 cut(s)	812, 999
Msp20I	TGGCCA	2 cut(s)	5, 807
MspI	CCGG	2 cut(s)	265, 930
MspR9I	CCNGG	2 cut(s)	776, 930
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	8 cut(s)	242, 446, 479, 515, 548, 683, 692, 746
NciI	CCSGG	1 cut(s)	930
NcoI	CCATGG	2 cut(s)	36, 117
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
NlaIII	CATG	2 cut(s)	40, 121
NlaIV	GGNNCC	1 cut(s)	244
PciSI	GCTCTTC	2 cut(s)	489, 862
PfeI	GAWTC	2 cut(s)	785, 977
PinAI	ACCGGT	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	439
PmaCI	CACGTG	1 cut(s)	512
PmlI	CACGTG	1 cut(s)	512
Ppu21I	YACGTR	1 cut(s)	512
Psp124BI	GAGCTC	2 cut(s)	169, 857
Psp6I	CCWGG	1 cut(s)	774
PspCI	CACGTG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	244
PsuI	RGATCY	3 cut(s)	319, 502, 919
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacI	GAGCTC	2 cut(s)	169, 857
SapI	GCTCTTC	2 cut(s)	489, 862
SaqAI	TTAA	2 cut(s)	812, 999
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	7 cut(s)	319, 502, 574, 647, 823, 871, 919
ScrFI	CCNGG	2 cut(s)	776, 930
SduI	GDGCHC	5 cut(s)	169, 238, 247, 742, 857
SfaNI	GCATC	2 cut(s)	366, 834
SfcI	CTRYAG	1 cut(s)	816
Sse9I	AATT	5 cut(s)	11, 476, 553, 984, 1004
SsiI	CCGC	5 cut(s)	51, 71, 156, 542, 747
SspMI	CTAG	2 cut(s)	273, 848
SstI	GAGCTC	2 cut(s)	169, 857
StyD4I	CCNGG	2 cut(s)	774, 928
StyI	CCWWGG	2 cut(s)	36, 117
TaaI	ACNGT	2 cut(s)	897, 940
TaiI	ACGT	3 cut(s)	143, 229, 514
TaqI	TCGA	3 cut(s)	218, 466, 650
TasI	AATT	5 cut(s)	11, 476, 553, 984, 1004
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	785, 977
Tru1I	TTAA	2 cut(s)	812, 999
Tru9I	TTAA	2 cut(s)	812, 999
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	4 cut(s)	84, 266, 371, 1017
TspGWI	ACGGA	1 cut(s)	1027
XbaI	TCTAGA	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	273, 848
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.