Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Forward (+)

4451998 .. 4457098

Gene Structure 5101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1057100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGAAGTTTATGAAGCTGGGGTCCAAGCCTGATGCATTTCAGGCTGATGGCAAGTCTATCAGATATGTGTCATCTGACTTGCAAACAGATGTCATTATTAATGTTGGGGATGTGAAGTTTTACCTTCACAAGTTCCCTCTCTTGTCCAAGAGCAATCGCCTGCAAAAACTAGTATCTAAACCCAACGATGATTCTGAAGAAGTTGACATGGTTGATTTTCCCGGTGGGCCAAAATCCTTTGAAATTTGTGCAAAGTTTTGCTATGGAATGACTGTTACTCTGAACGCTTACAATGTTGTGGCTGCTCGTTGTGCTGCTGAGTATCTGGAGATGACCGAGGATGTTGATCGCAGTAACCTAATATACAAAATTGAGGTGTTCCTTAACTCAAGCATCTTCCGCAGCTGGAAGGATTCCATTATTGTTCTACAAACCACCAAATCTCTTCTGTCATGGTCTGATGATCTGAAGATTGTCGGAAGATGCATAGATTCAATTGCATCTAAAACGTCTGTAGACCCTACTAACATCACCTGGTCCTATACGTATAACCGAAAACTAGCAGAGCCTGATAAAATTATTGAAGAAGGGATGAATTATCGAGACAAAATTGAAAAAGTTCCAAGGGATTGGTGGGTTGAAGACATATGTGAGTTGGATATTGATCTCTACAAGCGAGTTATGATTGCTGTGAAATCGAAGGGAAGAATGGACGGCACTGTTATTGGGGAGGCTCTGAAGACTTATGCCGTTAGATGGTTGCCAGATTCTGTTGATGCACTGGTTTCAGATGAACACGCCTTGAGGAACAAATCTCTGGTAGAAACAATTATTTGCTTACTGCCGTCTGACAAAGGCATGGGTTGTTCATCAAGTTTCTTGCTGAAACTTTTGAAAGTTTCTATTTTGGTTGGAGCAGACGAGTCGTTGAGGGAGGAGCTGGTGAAGAGAATCAGTTTGAAGTTGCATGAAGTTTGTGTCGATGACTTATTGATCCCCGCTCGATCTCCTCAAATTACTATATATGATGTTGAGTTGGTTCAGTCTGTTGTGAATCAGTATGTGATGCATGAAAAGTATAAGTGGGATTTGGATGTTGTCGAGAAGAATGAAAAGGGGACTGAGACTTTTACGTTATTGAGTGTTGGTAGACTGGTTGATGGGTACATTGCGGAAATTGCACATGACCCAAATCTTAACCTCAGTAGTTTCGTAGAGTTGTCACAATCAATTCCCGAGTCAGCAAGGCCAATTCACGATGGGTTGTACAAAGCCATTGACATCTACCTGAAGGAGCACCCTAGTTTAACAAAGGCTGAAAGGAAAAGAATATGCGGATTGATGGATGTCAAGAAACTTACAGTGGAGGCATCCATGGATGCTGCACAGAACGAGCAGCTCCCACTCCGAGTTGTTGTTCAAGTTCTCTTCTTTGAGCAGGTTAGGTCTGCAGCTAGCGTTCGAGCCCTTAACAACCATCCCAGCGACACTTCACTTTCCACGACAAATTTGGACGAAGAACACGACAAGACAGCAGAAGAAAACTGCAAGCCTCCGGGAAAACAGATGAGCCAAATGAAGGTAACAGAAGAGTTCCAGAAGAACGCGAAACTTGGCAAGAAGAGCAGCAAAAACAGCGCAAGTGGTTCGCAGTTGCTGCCATCTAGGTCAAGGAGAATCTTCGACAAATTGTGGTCTGTGGGGAAGGGGCATGTAGAGAACAAGAGCTCGGAGACATCCGGGAGTTCTCATAGTCCAACTTCGAATGTTCCTGGCGATTCAAAGTCGGTTTCAAGACACCGGAGGCATTCCATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

607

Amino Acids

68.13

Weight (kDa)

6.53

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	27 - 116	7.4e-07	BTB/POZ domain
NPH3	PF03000	210 - 458	6e-86	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1429
AccBSI	CCGCTC	1 cut(s)	1001
AccI	GTMKAC	2 cut(s)	516, 1150
AccII	CGCG	1 cut(s)	1607
AciI	CCGC	4 cut(s)	400, 999, 1172, 1335
AclWI	GGATC	1 cut(s)	988
AcsI	RAATTY	2 cut(s)	243, 1507
AcuI	CTGAAG	4 cut(s)	216, 488, 758, 1310
AfaI	GTAC	2 cut(s)	1166, 1268
AfiI	CCNNNNNNNGG	2 cut(s)	756, 1579
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	533, 1771
AluBI	AGCT	6 cut(s)	16, 405, 940, 1399, 1454, 1728
AluI	AGCT	6 cut(s)	16, 405, 940, 1399, 1454, 1728
Alw21I	GWGCWC	2 cut(s)	1299, 1730
Alw26I	GTCTC	3 cut(s)	597, 1118, 1727
AlwI	GGATC	1 cut(s)	988
AlwNI	CAGNNNCTG	3 cut(s)	569, 770, 1657
Ama87I	CYCGRG	1 cut(s)	1235
AoxI	GGCC	2 cut(s)	227, 1247
ApeKI	GCWGC	8 cut(s)	302, 314, 402, 1382, 1396, 1451, 1626, 1657
ApoI	RAATTY	2 cut(s)	243, 1507
AseI	ATTAAT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	1640
AspS9I	GGNCC	3 cut(s)	21, 227, 537
AsuC2I	CCSGG	3 cut(s)	222, 1557, 1741
AsuHPI	GGTGA	2 cut(s)	523, 955
AsuII	TTCGAA	1 cut(s)	1763
AsuNHI	GCTAGC	1 cut(s)	1454
AvaI	CYCGRG	1 cut(s)	1235
AvaII	GGWCC	2 cut(s)	21, 537
BanII	GRGCYC	2 cut(s)	1468, 1730
BbsI	GAAGAC	2 cut(s)	648, 746
Bbv12I	GWGCWC	2 cut(s)	1299, 1730
BbvI	GCAGC	8 cut(s)	289, 301, 414, 1369, 1408, 1463, 1638, 1644
BccI	CCATC	8 cut(s)	41, 750, 1154, 1253, 1336, 1485, 1669, 1820
BceAI	ACGGC	3 cut(s)	730, 734, 829
BcgI	CGANNNNNNTGC	4 cut(s)	906, 940, 1629, 1663
BciT130I	CCWGG	2 cut(s)	535, 1773
BcnI	CCSGG	3 cut(s)	222, 1557, 1741
BcoDI	GTCTC	3 cut(s)	597, 1118, 1727
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	5 cut(s)	170, 560, 1302, 1455, 1665
BfmI	CTRYAG	2 cut(s)	513, 1449
BfuAI	ACCTGC	1 cut(s)	1429
BisI	GCNGC	8 cut(s)	303, 315, 403, 1383, 1397, 1452, 1627, 1658
BlsI	GCNGC	8 cut(s)	304, 316, 404, 1384, 1398, 1453, 1628, 1659
Bme1390I	CCNGG	5 cut(s)	222, 535, 1557, 1741, 1773
Bme18I	GGWCC	2 cut(s)	21, 537
BmeT110I	CYCGRG	1 cut(s)	1235
BmgT120I	GGNCC	3 cut(s)	21, 227, 537
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	5 cut(s)	222, 535, 1557, 1741, 1773
BmsI	GCATC	8 cut(s)	22, 402, 473, 509, 766, 1056, 1369, 1379
BmtI	GCTAGC	1 cut(s)	1458
BpiI	GAAGAC	2 cut(s)	648, 746
BpmI	CTGGAG	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	1763
BpuEI	CTTGAG	2 cut(s)	373, 823
BpuMI	CCSGG	3 cut(s)	222, 1557, 1741
BsaAI	YACGTR	1 cut(s)	546
BsaBI	GATNNNNATC	2 cut(s)	345, 663
BsaJI	CCNNGG	3 cut(s)	336, 623, 1374
BsaWI	WCCGGW	1 cut(s)	1800
Bsc4I	CCNNNNNNNGG	2 cut(s)	756, 1579
Bse1I	ACTGG	2 cut(s)	786, 1158
Bse3DI	GCAATG	1 cut(s)	1167
Bse8I	GATNNNNATC	2 cut(s)	345, 663
BseBI	CCWGG	2 cut(s)	535, 1773
BseDI	CCNNGG	3 cut(s)	336, 623, 1374
BseGI	GGATG	9 cut(s)	115, 346, 597, 1099, 1351, 1370, 1384, 1477, 1736
BseJI	GATNNNNATC	2 cut(s)	345, 663
BseLI	CCNNNNNNNGG	2 cut(s)	756, 1579
BseMI	GCAATG	1 cut(s)	1167
BseMII	CTCAG	3 cut(s)	309, 1113, 1216
BseNI	ACTGG	2 cut(s)	786, 1158
BseRI	GAGGAG	2 cut(s)	950, 999
BseXI	GCAGC	8 cut(s)	289, 301, 414, 1369, 1408, 1463, 1638, 1644
BseYI	CCCAGC	2 cut(s)	16, 1481
BsgI	GTGCAG	1 cut(s)	1368
Bsh1236I	CGCG	1 cut(s)	1607
BshFI	GGCC	2 cut(s)	229, 1249
BsiHKAI	GWGCWC	2 cut(s)	1299, 1730
BsiHKCI	CYCGRG	1 cut(s)	1235
BsiSI	CCGG	4 cut(s)	222, 1556, 1740, 1801
BslFI	GGGAC	1 cut(s)	1132
BslI	CCNNNNNNNGG	2 cut(s)	756, 1579
BsmAI	GTCTC	3 cut(s)	597, 1118, 1727
BsmFI	GGGAC	1 cut(s)	1132
BsmI	GAATGC	1 cut(s)	1807
BsnI	GGCC	2 cut(s)	229, 1249
BsoBI	CYCGRG	1 cut(s)	1235
Bsp119I	TTCGAA	1 cut(s)	1763
Bsp1286I	GDGCHC	3 cut(s)	1299, 1468, 1730
Bsp1407I	TGTACA	1 cut(s)	1266
Bsp143I	GATC	5 cut(s)	346, 463, 664, 993, 1004
Bsp19I	CCATGG	1 cut(s)	1374
BspACI	CCGC	4 cut(s)	400, 999, 1172, 1335
BspANI	GGCC	2 cut(s)	229, 1249
BspCNI	CTCAG	3 cut(s)	310, 1114, 1215
BspFNI	CGCG	1 cut(s)	1607
BspLI	GGNNCC	1 cut(s)	22
BspMAI	CTGCAG	1 cut(s)	1453
BspMI	ACCTGC	1 cut(s)	1429
BspOI	GCTAGC	1 cut(s)	1458
BspPI	GGATC	1 cut(s)	988
BspQI	GCTCTTC	1 cut(s)	1616
BspT104I	TTCGAA	1 cut(s)	1763
BsrBI	CCGCTC	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	1167
BsrGI	TGTACA	1 cut(s)	1266
BsrI	ACTGG	2 cut(s)	786, 1158
BssECI	CCNNGG	3 cut(s)	336, 623, 1374
BssMI	GATC	5 cut(s)	346, 463, 664, 993, 1004
BssT1I	CCWWGG	2 cut(s)	623, 1374
Bst2UI	CCWGG	2 cut(s)	535, 1773
Bst4CI	ACNGT	3 cut(s)	274, 721, 1363
Bst6I	CTCTTC	5 cut(s)	450, 941, 1433, 1584, 1616
BstAPI	GCANNNNNTGC	1 cut(s)	1657
BstAUI	TGTACA	1 cut(s)	1266
BstBAI	YACGTR	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	1763
BstC8I	GCNNGC	3 cut(s)	161, 1456, 1550
BstDEI	CTNAG	3 cut(s)	318, 1122, 1202
BstDSI	CCRYGG	1 cut(s)	1374
BstF5I	GGATG	9 cut(s)	115, 346, 597, 1099, 1351, 1370, 1384, 1477, 1736
BstFNI	CGCG	1 cut(s)	1607
BstHHI	GCGC	1 cut(s)	1640
BstKTI	GATC	5 cut(s)	349, 466, 667, 996, 1007
BstMAI	GTCTC	3 cut(s)	597, 1118, 1727
BstMBI	GATC	5 cut(s)	346, 463, 664, 993, 1004
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 311, 399, 1178, 1623, 1635, 1657
BstNI	CCWGG	2 cut(s)	535, 1773
BstNSI	RCATGY	1 cut(s)	1715
BstSCI	CCNGG	5 cut(s)	220, 533, 1555, 1739, 1771
BstSFI	CTRYAG	2 cut(s)	513, 1449
BstSNI	TACGTA	1 cut(s)	546
BstUI	CGCG	1 cut(s)	1607
BstV1I	GCAGC	8 cut(s)	289, 301, 414, 1369, 1408, 1463, 1638, 1644
BstV2I	GAAGAC	2 cut(s)	648, 746
BstXI	CCANNNNNNTGG	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	229, 1249
BtgI	CCRYGG	1 cut(s)	1374
BtsCI	GGATG	9 cut(s)	115, 346, 597, 1099, 1351, 1370, 1384, 1477, 1736
BtsIMutI	CAGTG	3 cut(s)	717, 779, 1368
BveI	ACCTGC	1 cut(s)	1429
Cac8I	GCNNGC	3 cut(s)	161, 1456, 1550
CaiI	CAGNNNCTG	3 cut(s)	569, 770, 1657
CfoI	GCGC	1 cut(s)	1640
Cfr13I	GGNCC	3 cut(s)	21, 227, 537
CsiI	ACCWGGT	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	1165, 1267
CviAII	CATG	8 cut(s)	208, 453, 859, 968, 1070, 1184, 1375, 1712
CviQI	GTAC	2 cut(s)	1165, 1267
DdeI	CTNAG	3 cut(s)	318, 1122, 1202
DpnI	GATC	5 cut(s)	348, 465, 666, 995, 1006
DpnII	GATC	5 cut(s)	346, 463, 664, 993, 1004
Eam1104I	CTCTTC	5 cut(s)	450, 941, 1433, 1584, 1616
EarI	CTCTTC	5 cut(s)	450, 941, 1433, 1584, 1616
Ecl136II	GAGCTC	1 cut(s)	1728
Eco105I	TACGTA	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	623, 1374
Eco24I	GRGCYC	2 cut(s)	1468, 1730
Eco47I	GGWCC	2 cut(s)	21, 537
Eco53kI	GAGCTC	1 cut(s)	1728
Eco57I	CTGAAG	4 cut(s)	216, 488, 758, 1310
Eco88I	CYCGRG	1 cut(s)	1235
EcoICRI	GAGCTC	1 cut(s)	1728
EcoRII	CCWGG	2 cut(s)	533, 1771
EcoT14I	CCWWGG	2 cut(s)	623, 1374
EcoT22I	ATGCAT	3 cut(s)	37, 488, 1071
EcoT38I	GRGCYC	2 cut(s)	1468, 1730
ErhI	CCWWGG	2 cut(s)	623, 1374
FaeI	CATG	8 cut(s)	211, 456, 862, 971, 1073, 1187, 1378, 1715
FaqI	GGGAC	1 cut(s)	1132
FatI	CATG	8 cut(s)	207, 452, 858, 967, 1069, 1183, 1374, 1711
FauI	CCCGC	1 cut(s)	1006
FauNDI	CATATG	1 cut(s)	647
FblI	GTMKAC	2 cut(s)	516, 1150
Fnu4HI	GCNGC	8 cut(s)	303, 315, 403, 1383, 1397, 1452, 1627, 1658
FokI	GGATG	9 cut(s)	122, 353, 604, 1106, 1357, 1358, 1391, 1464, 1723
FriOI	GRGCYC	2 cut(s)	1468, 1730
Fsp4HI	GCNGC	8 cut(s)	303, 315, 403, 1383, 1397, 1452, 1627, 1658
FspBI	CTAG	5 cut(s)	170, 560, 1302, 1455, 1665
GlaI	GCGC	1 cut(s)	1639
GluI	GCNGC	8 cut(s)	303, 315, 403, 1383, 1397, 1452, 1627, 1658
GsaI	CCCAGC	2 cut(s)	20, 1485
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	229, 1249
HapII	CCGG	4 cut(s)	222, 1556, 1740, 1801
HhaI	GCGC	1 cut(s)	1640
Hin1II	CATG	8 cut(s)	211, 456, 862, 971, 1073, 1187, 1378, 1715
Hin6I	GCGC	1 cut(s)	1638
HinP1I	GCGC	1 cut(s)	1638
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaII	CCGG	4 cut(s)	222, 1556, 1740, 1801
HphI	GGTGA	2 cut(s)	523, 955
Hpy166II	GTNNAC	3 cut(s)	205, 517, 1151
Hpy188III	TCNNGA	8 cut(s)	326, 602, 1102, 1235, 1256, 1351, 1597, 1794
Hpy8I	GTNNAC	3 cut(s)	205, 517, 1151
HpyAV	CCTTC	7 cut(s)	134, 403, 581, 694, 1285, 1573, 1699
HpyCH4III	ACNGT	3 cut(s)	274, 721, 1363
HpyCH4IV	ACGT	3 cut(s)	509, 545, 1133
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 311, 399, 1178, 1623, 1635, 1657
HpyF3I	CTNAG	3 cut(s)	318, 1122, 1202
HpySE526I	ACGT	3 cut(s)	509, 545, 1133
Hsp92II	CATG	8 cut(s)	211, 456, 862, 971, 1073, 1187, 1378, 1715
HspAI	GCGC	1 cut(s)	1638
Kzo9I	GATC	5 cut(s)	346, 463, 664, 993, 1004
LguI	GCTCTTC	1 cut(s)	1616
LmnI	GCTCC	4 cut(s)	914, 937, 1294, 1404
Lsp1109I	GCAGC	8 cut(s)	289, 301, 414, 1369, 1408, 1463, 1638, 1644
LweI	GCATC	8 cut(s)	22, 402, 473, 509, 766, 1056, 1369, 1379
MabI	ACCWGGT	1 cut(s)	533
MaeI	CTAG	5 cut(s)	170, 560, 1302, 1455, 1665
MaeII	ACGT	3 cut(s)	509, 545, 1133
MaeIII	GTNAC	4 cut(s)	274, 353, 1221, 1582
MalI	GATC	5 cut(s)	348, 465, 666, 995, 1006
MbiI	CCGCTC	1 cut(s)	1001
MboI	GATC	5 cut(s)	346, 463, 664, 993, 1004
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	3 cut(s)	1299, 1468, 1730
MlyI	GAGTC	2 cut(s)	932, 1247
MmeI	TCCRAC	4 cut(s)	457, 636, 892, 1781
Mph1103I	ATGCAT	3 cut(s)	37, 488, 1071
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	5 cut(s)	99, 384, 1197, 1307, 1470
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	4 cut(s)	222, 1556, 1740, 1801
MspR9I	CCNGG	5 cut(s)	222, 535, 1557, 1741, 1773
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	1807
MvaI	CCWGG	2 cut(s)	535, 1773
MvnI	CGCG	1 cut(s)	1607
MwoI	GCNNNNNNNGC	7 cut(s)	41, 311, 399, 1178, 1623, 1635, 1657
NciI	CCSGG	3 cut(s)	222, 1557, 1741
NcoI	CCATGG	1 cut(s)	1374
NdeI	CATATG	1 cut(s)	647
NdeII	GATC	5 cut(s)	346, 463, 664, 993, 1004
NheI	GCTAGC	1 cut(s)	1454
NlaIII	CATG	8 cut(s)	211, 456, 862, 971, 1073, 1187, 1378, 1715
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	1221
NsiI	ATGCAT	3 cut(s)	37, 488, 1071
NspI	RCATGY	1 cut(s)	1715
NspV	TTCGAA	1 cut(s)	1763
PciSI	GCTCTTC	1 cut(s)	1616
PcsI	WCGNNNNNNNCGW	1 cut(s)	1521
PctI	GAATGC	1 cut(s)	1807
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	8 cut(s)	191, 413, 491, 767, 951, 1054, 1677, 1778
PfoI	TCCNGGA	2 cut(s)	1555, 1739
PkrI	GCNGC	8 cut(s)	304, 316, 404, 1384, 1398, 1453, 1628, 1659
PleI	GAGTC	2 cut(s)	931, 1246
PpsI	GAGTC	2 cut(s)	931, 1246
Ppu21I	YACGTR	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	1730
Psp6I	CCWGG	2 cut(s)	533, 1771
PspFI	CCCAGC	2 cut(s)	16, 1481
PspGI	CCWGG	2 cut(s)	533, 1771
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	21, 227, 537
PstI	CTGCAG	1 cut(s)	1453
PstNI	CAGNNNCTG	3 cut(s)	569, 770, 1657
PvuII	CAGCTG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	1166, 1268
RsaNI	GTAC	2 cut(s)	1165, 1267
SacI	GAGCTC	1 cut(s)	1730
SapI	GCTCTTC	1 cut(s)	1616
SaqAI	TTAA	5 cut(s)	99, 384, 1197, 1307, 1470
SatI	GCNGC	8 cut(s)	303, 315, 403, 1383, 1397, 1452, 1627, 1658
Sau3AI	GATC	5 cut(s)	346, 463, 664, 993, 1004
Sau96I	GGNCC	3 cut(s)	21, 227, 537
SchI	GAGTC	2 cut(s)	932, 1247
ScrFI	CCNGG	5 cut(s)	222, 535, 1557, 1741, 1773
SduI	GDGCHC	3 cut(s)	1299, 1468, 1730
SexAI	ACCWGGT	1 cut(s)	533
SfaNI	GCATC	8 cut(s)	22, 402, 473, 509, 766, 1056, 1369, 1379
SfcI	CTRYAG	2 cut(s)	513, 1449
SfuI	TTCGAA	1 cut(s)	1763
SinI	GGWCC	2 cut(s)	21, 537
SmlI	CTYRAG	2 cut(s)	388, 802
SmoI	CTYRAG	2 cut(s)	388, 802
SnaBI	TACGTA	1 cut(s)	546
SpeI	ACTAGT	1 cut(s)	169
SsiI	CCGC	4 cut(s)	400, 999, 1172, 1335
SspMI	CTAG	5 cut(s)	170, 560, 1302, 1455, 1665
SstI	GAGCTC	1 cut(s)	1730
StyD4I	CCNGG	5 cut(s)	220, 533, 1555, 1739, 1771
StyI	CCWWGG	2 cut(s)	623, 1374
TaaI	ACNGT	3 cut(s)	274, 721, 1363
TaiI	ACGT	3 cut(s)	512, 548, 1136
TaqI	TCGA	8 cut(s)	601, 698, 981, 1003, 1101, 1462, 1683, 1763
TaqII	GACCGA	1 cut(s)	350
TatI	WGTACW	1 cut(s)	1266
TfiI	GAWTC	8 cut(s)	191, 413, 491, 767, 951, 1054, 1677, 1778
Tru1I	TTAA	5 cut(s)	99, 384, 1197, 1307, 1470
Tru9I	TTAA	5 cut(s)	99, 384, 1197, 1307, 1470
TscAI	CASTG	3 cut(s)	724, 786, 1368
TseFI	GTSAC	1 cut(s)	1221
TseI	GCWGC	8 cut(s)	302, 314, 402, 1382, 1396, 1451, 1626, 1657
Tsp45I	GTSAC	1 cut(s)	1221
TspDTI	ATGAA	9 cut(s)	17, 26, 608, 807, 858, 984, 1086, 1125, 1592
TspRI	CASTG	3 cut(s)	724, 786, 1368
VpaK11BI	GGWCC	2 cut(s)	21, 537
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	2 cut(s)	243, 1507
XceI	RCATGY	1 cut(s)	1715
XcmI	CCANNNNNNNNNTGG	2 cut(s)	630, 1507
XmiI	GTMKAC	2 cut(s)	516, 1150
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	5 cut(s)	170, 560, 1302, 1455, 1665
Zsp2I	ATGCAT	3 cut(s)	37, 488, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.