pycom08g04660

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
3528541 .. 3529901
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04660.2

Sequence Viewer

Length: 1230 bp
ATGAATTATCGAGACAAAATTGAAAAAGTTCCAAGGGATTGGTGGGTTGAAGACATATGTGAGTTGGATATTGATCGCTACAAGCGAGTTATGATTGCTGTGAAATCGAAGGGAAGAATGGATGGCACTGTTATTGGGGAGGCTCTGAAGACTTATGCAGTTAGATGGTTGCCAGATTCTGTTGATGCACTGGTTTCAGACGAACACGCCTTGAGGAACAAATCTCTGGTAAAAACAATTATTTGCTTATTGCCGTCTGACAAAGGTATGGGTTGTTCATCAAGTTTCTTGCTGAAACTTTTGAAAGTTTCTATTTTGGTTGGAGCAGACGAGTCGTTGAGGGAGGAGCTGGTGAAGAGGATCAGTTTGAAGTTGCATGAAGCTTGTGTCGGTGACTTGTTGATCCCCGCTCGATCTCCTCAGATTACTATATATGATGTTGAGTTGGTTCAGTCTGTTGTGAGTCAGTATGTGATGCATGAAAAGTGTAAGTGGGATTTGGATTTTGTCGAGAAGAATGAAAAGGGGACTGATACTTTTACGTTGTTGAGTGTTGGTAGACTGGTTGATAGGTATCTTGCGGAAATTGCACATGACCCAAACCTTAACCTCAGTAGTTTCGTAGAGTTGTCCCAATCAATTCCCGAATCAGCACGGCCAATTCAGGATGGGCTGTACAAAGCCATCGACATCTACCTGAAGGAGCACCCTAGTTTAACAAAGGCTGAAAGGAAAAGAATATGCGGATTGATGGATGTCAAGAAACTTACAGTGGAGGCATCCATGGATGCTGCACAGAACGAGAAGCTCCCACTCCGAGTCGTTGTTCAAGTTCTCTTCTTTGAGCAGGTAAGATCTGCAGCTAGCGTTCGAGCCCTTAACAACCATCCTAGTGACACTTCACTTTCCACGACAAATATGGACGAAGAACGTGACAAGACAGCAGAAGAAAACTGCAAGCCTCTGGGAAAACAGATGAGCCAAATGAAGGTAACCGAAGAGTTCCAGAAGAACATGAAACTTGGCAAGAAGAGCAGCAAAAACAGCGCAAGTGGTTCGCAGTTGCTGCCATCTAGGTCCAGGAGAATCTTTGACAAATTGTGGTCTGTGGGGAAGGGGCATGTAGAGAACAAGAGCTCGGAGACATCCGGGAGTTCTCATAGTCCAACTTCAAATGTTCCTGGCGATTCAAAGTCGGTTTCAAGACACCGGAGGCATTCTATCTCCTAA

Protein Analysis

410

Amino Acids

45.97

Weight (kDa)

8.76

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccBSI CCGCTC 1 cut(s) 410
AccI GTMKAC 1 cut(s) 559
AciI CCGC 3 cut(s) 408, 581, 744
AclWI GGATC 2 cut(s) 368, 397
AcoI YGGCCR 1 cut(s) 656
AcuI CTGAAG 2 cut(s) 167, 719
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 1 cut(s) 988
AgsI TTSAA 8 cut(s) 23, 50, 304, 370, 830, 1173, 1191, 1203
AjnI CCWGG 2 cut(s) 1079, 1180
AluBI AGCT 5 cut(s) 349, 383, 808, 863, 1137
AluI AGCT 5 cut(s) 349, 383, 808, 863, 1137
Alw21I GWGCWC 2 cut(s) 708, 1139
Alw26I GTCTC 2 cut(s) 6, 1136
AlwI GGATC 2 cut(s) 368, 397
AlwNI CAGNNNCTG 2 cut(s) 179, 1066
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 4 cut(s) 791, 860, 1035, 1066
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 1 cut(s) 1077
AsuC2I CCSGG 1 cut(s) 1150
AsuHPI GGTGA 2 cut(s) 364, 404
AsuNHI GCTAGC 1 cut(s) 863
AvaII GGWCC 1 cut(s) 1077
BanII GRGCYC 2 cut(s) 877, 1139
BbsI GAAGAC 2 cut(s) 57, 155
Bbv12I GWGCWC 2 cut(s) 708, 1139
BbvI GCAGC 4 cut(s) 778, 872, 1047, 1053
BccI CCATC 7 cut(s) 116, 159, 662, 692, 745, 894, 1078
BceAI ACGGC 2 cut(s) 238, 671
BcgI CGANNNNNNTGC 4 cut(s) 315, 349, 1038, 1072
BciT130I CCWGG 2 cut(s) 1081, 1182
BcnI CCSGG 1 cut(s) 1150
BcoDI GTCTC 2 cut(s) 6, 1136
BfaI CTAG 4 cut(s) 711, 864, 891, 1074
BfmI CTRYAG 1 cut(s) 858
BfuAI ACCTGC 1 cut(s) 838
BglII AGATCT 1 cut(s) 854
BisI GCNGC 4 cut(s) 792, 861, 1036, 1067
BlsI GCNGC 4 cut(s) 793, 862, 1037, 1068
Bme1390I CCNGG 3 cut(s) 1081, 1150, 1182
Bme18I GGWCC 1 cut(s) 1077
BmgT120I GGNCC 1 cut(s) 1077
BmrFI CCNGG 3 cut(s) 1081, 1150, 1182
BmsI GCATC 4 cut(s) 175, 465, 778, 788
BmtI GCTAGC 1 cut(s) 867
BpiI GAAGAC 2 cut(s) 57, 155
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 1150
BsaBI GATNNNNATC 2 cut(s) 72, 573
BsaJI CCNNGG 2 cut(s) 32, 783
BsaWI WCCGGW 1 cut(s) 1209
Bsc4I CCNNNNNNNGG 1 cut(s) 988
Bse1I ACTGG 2 cut(s) 195, 567
Bse8I GATNNNNATC 2 cut(s) 72, 573
BseBI CCWGG 2 cut(s) 1081, 1182
BseDI CCNNGG 2 cut(s) 32, 783
BseGI GGATG 7 cut(s) 127, 673, 760, 779, 793, 886, 1145
BseJI GATNNNNATC 2 cut(s) 72, 573
BseLI CCNNNNNNNGG 1 cut(s) 988
BseMII CTCAG 2 cut(s) 434, 625
BseNI ACTGG 2 cut(s) 195, 567
BseRI GAGGAG 2 cut(s) 359, 408
BseXI GCAGC 4 cut(s) 778, 872, 1047, 1053
BsgI GTGCAG 1 cut(s) 777
BshFI GGCC 1 cut(s) 658
BsiHKAI GWGCWC 2 cut(s) 708, 1139
BsiSI CCGG 2 cut(s) 1149, 1210
BslFI GGGAC 2 cut(s) 541, 616
BslI CCNNNNNNNGG 1 cut(s) 988
BsmAI GTCTC 2 cut(s) 6, 1136
BsmFI GGGAC 2 cut(s) 541, 616
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 1 cut(s) 658
Bsp1286I GDGCHC 3 cut(s) 708, 877, 1139
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 5 cut(s) 73, 360, 402, 413, 854
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 3 cut(s) 408, 581, 744
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 2 cut(s) 433, 624
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 867
BspPI GGATC 2 cut(s) 368, 397
BspQI GCTCTTC 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 2 cut(s) 195, 567
BssECI CCNNGG 2 cut(s) 32, 783
BssMI GATC 5 cut(s) 73, 360, 402, 413, 854
BssT1I CCWWGG 2 cut(s) 32, 783
Bst2UI CCWGG 2 cut(s) 1081, 1182
Bst4CI ACNGT 2 cut(s) 130, 772
Bst6I CTCTTC 4 cut(s) 350, 842, 993, 1025
BstAPI GCANNNNNTGC 1 cut(s) 1066
BstAUI TGTACA 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 865, 959
BstDEI CTNAG 2 cut(s) 420, 611
BstDSI CCRYGG 1 cut(s) 783
BstEII GGTNACC 1 cut(s) 991
BstF5I GGATG 7 cut(s) 127, 673, 760, 779, 793, 886, 1145
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 5 cut(s) 76, 363, 405, 416, 857
BstMAI GTCTC 2 cut(s) 6, 1136
BstMBI GATC 5 cut(s) 73, 360, 402, 413, 854
BstMWI GCNNNNNNNGC 4 cut(s) 587, 1032, 1044, 1066
BstNI CCWGG 2 cut(s) 1081, 1182
BstNSI RCATGY 1 cut(s) 1124
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 3 cut(s) 1079, 1148, 1180
BstSFI CTRYAG 1 cut(s) 858
BstV1I GCAGC 4 cut(s) 778, 872, 1047, 1053
BstV2I GAAGAC 2 cut(s) 57, 155
BstX2I RGATCY 1 cut(s) 854
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 854
BsuRI GGCC 1 cut(s) 658
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 7 cut(s) 127, 673, 760, 779, 793, 886, 1145
BtsIMutI CAGTG 3 cut(s) 126, 188, 777
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 2 cut(s) 865, 959
CaiI CAGNNNCTG 2 cut(s) 179, 1066
CfoI GCGC 1 cut(s) 1049
Cfr13I GGNCC 1 cut(s) 1077
Csp6I GTAC 1 cut(s) 676
CviAII CATG 6 cut(s) 377, 479, 593, 784, 1015, 1121
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 2 cut(s) 420, 611
DpnI GATC 5 cut(s) 75, 362, 404, 415, 856
DpnII GATC 5 cut(s) 73, 360, 402, 413, 854
EaeI YGGCCR 1 cut(s) 656
Eam1104I CTCTTC 4 cut(s) 350, 842, 993, 1025
EarI CTCTTC 4 cut(s) 350, 842, 993, 1025
Ecl136II GAGCTC 1 cut(s) 1137
Eco130I CCWWGG 2 cut(s) 32, 783
Eco24I GRGCYC 2 cut(s) 877, 1139
Eco47I GGWCC 1 cut(s) 1077
Eco53kI GAGCTC 1 cut(s) 1137
Eco57I CTGAAG 2 cut(s) 167, 719
Eco91I GGTNACC 1 cut(s) 991
EcoICRI GAGCTC 1 cut(s) 1137
EcoO65I GGTNACC 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 1079, 1180
EcoT14I CCWWGG 2 cut(s) 32, 783
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 2 cut(s) 877, 1139
ErhI CCWWGG 2 cut(s) 32, 783
FaeI CATG 6 cut(s) 380, 482, 596, 787, 1018, 1124
FaqI GGGAC 2 cut(s) 541, 616
FatI CATG 6 cut(s) 376, 478, 592, 783, 1014, 1120
FauI CCCGC 1 cut(s) 415
FauNDI CATATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 792, 861, 1036, 1067
FokI GGATG 7 cut(s) 134, 680, 766, 767, 800, 873, 1132
FriOI GRGCYC 2 cut(s) 877, 1139
Fsp4HI GCNGC 4 cut(s) 792, 861, 1036, 1067
FspBI CTAG 4 cut(s) 711, 864, 891, 1074
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 4 cut(s) 792, 861, 1036, 1067
HaeIII GGCC 1 cut(s) 658
HapII CCGG 2 cut(s) 1149, 1210
HhaI GCGC 1 cut(s) 1049
Hin1II CATG 6 cut(s) 380, 482, 596, 787, 1018, 1124
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 7 cut(s) 176, 332, 463, 647, 819, 1086, 1187
HpaII CCGG 2 cut(s) 1149, 1210
HphI GGTGA 2 cut(s) 364, 404
Hpy166II GTNNAC 1 cut(s) 560
Hpy188I TCNGA 6 cut(s) 147, 199, 259, 423, 818, 1141
Hpy188III TCNNGA 7 cut(s) 11, 511, 644, 665, 760, 1006, 1203
Hpy8I GTNNAC 1 cut(s) 560
HpyAV CCTTC 4 cut(s) 103, 694, 982, 1108
HpyCH4III ACNGT 2 cut(s) 130, 772
HpyCH4IV ACGT 2 cut(s) 542, 931
HpyCH4V TGCA 8 cut(s) 158, 188, 376, 478, 590, 794, 860, 957
HpyF10VI GCNNNNNNNGC 4 cut(s) 587, 1032, 1044, 1066
HpyF3I CTNAG 2 cut(s) 420, 611
HpySE526I ACGT 2 cut(s) 542, 931
Hsp92II CATG 6 cut(s) 380, 482, 596, 787, 1018, 1124
HspAI GCGC 1 cut(s) 1047
Kzo9I GATC 5 cut(s) 73, 360, 402, 413, 854
LguI GCTCTTC 1 cut(s) 1025
LmnI GCTCC 4 cut(s) 323, 346, 703, 813
Lsp1109I GCAGC 4 cut(s) 778, 872, 1047, 1053
LweI GCATC 4 cut(s) 175, 465, 778, 788
MaeI CTAG 4 cut(s) 711, 864, 891, 1074
MaeII ACGT 2 cut(s) 542, 931
MaeIII GTNAC 4 cut(s) 392, 893, 932, 991
MalI GATC 5 cut(s) 75, 362, 404, 415, 856
MbiI CCGCTC 1 cut(s) 410
MboI GATC 5 cut(s) 73, 360, 402, 413, 854
MflI RGATCY 1 cut(s) 854
MhlI GDGCHC 3 cut(s) 708, 877, 1139
MluCI AATT 7 cut(s) 4, 18, 237, 585, 639, 660, 1097
MlyI GAGTC 3 cut(s) 341, 472, 828
MmeI TCCRAC 3 cut(s) 45, 301, 1190
Mph1103I ATGCAT 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 3 cut(s) 606, 716, 879
MslI CAYNNNNRTG 1 cut(s) 891
MspI CCGG 2 cut(s) 1149, 1210
MspR9I CCNGG 3 cut(s) 1081, 1150, 1182
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 2 cut(s) 1081, 1182
MwoI GCNNNNNNNGC 4 cut(s) 587, 1032, 1044, 1066
NciI CCSGG 1 cut(s) 1150
NcoI CCATGG 1 cut(s) 783
NdeI CATATG 1 cut(s) 56
NdeII GATC 5 cut(s) 73, 360, 402, 413, 854
NheI GCTAGC 1 cut(s) 863
NlaIII CATG 6 cut(s) 380, 482, 596, 787, 1018, 1124
NmuCI GTSAC 3 cut(s) 392, 893, 932
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 1124
PciSI GCTCTTC 1 cut(s) 1025
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 176, 647, 1086, 1187
PfoI TCCNGGA 2 cut(s) 1079, 1148
PkrI GCNGC 4 cut(s) 793, 862, 1037, 1068
PleI GAGTC 3 cut(s) 340, 471, 827
PpsI GAGTC 3 cut(s) 340, 471, 827
Psp124BI GAGCTC 1 cut(s) 1139
Psp6I CCWGG 2 cut(s) 1079, 1180
PspEI GGTNACC 1 cut(s) 991
PspGI CCWGG 2 cut(s) 1079, 1180
PspPI GGNCC 1 cut(s) 1077
PsrI GAACNNNNNNTAC 2 cut(s) 259, 291
PstI CTGCAG 1 cut(s) 862
PstNI CAGNNNCTG 2 cut(s) 179, 1066
PsuI RGATCY 1 cut(s) 854
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 1 cut(s) 891
SacI GAGCTC 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 1025
SaqAI TTAA 3 cut(s) 606, 716, 879
SatI GCNGC 4 cut(s) 792, 861, 1036, 1067
Sau3AI GATC 5 cut(s) 73, 360, 402, 413, 854
Sau96I GGNCC 1 cut(s) 1077
SchI GAGTC 3 cut(s) 341, 472, 828
ScrFI CCNGG 3 cut(s) 1081, 1150, 1182
SduI GDGCHC 3 cut(s) 708, 877, 1139
SfaNI GCATC 4 cut(s) 175, 465, 778, 788
SfcI CTRYAG 1 cut(s) 858
SinI GGWCC 1 cut(s) 1077
SmiMI CAYNNNNRTG 1 cut(s) 891
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 7 cut(s) 4, 18, 237, 585, 639, 660, 1097
SsiI CCGC 3 cut(s) 408, 581, 744
SspMI CTAG 4 cut(s) 711, 864, 891, 1074
SstI GAGCTC 1 cut(s) 1139
StyD4I CCNGG 3 cut(s) 1079, 1148, 1180
StyI CCWWGG 2 cut(s) 32, 783
TaaI ACNGT 2 cut(s) 130, 772
TaiI ACGT 2 cut(s) 545, 934
TaqI TCGA 6 cut(s) 10, 107, 412, 510, 687, 871
TasI AATT 7 cut(s) 4, 18, 237, 585, 639, 660, 1097
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 4 cut(s) 176, 647, 1086, 1187
Tru1I TTAA 3 cut(s) 606, 716, 879
Tru9I TTAA 3 cut(s) 606, 716, 879
TscAI CASTG 3 cut(s) 133, 195, 777
TseFI GTSAC 3 cut(s) 392, 893, 932
TseI GCWGC 4 cut(s) 791, 860, 1035, 1066
Tsp45I GTSAC 3 cut(s) 392, 893, 932
TspDTI ATGAA 7 cut(s) 17, 267, 393, 495, 534, 1001, 1031
TspRI CASTG 3 cut(s) 133, 195, 777
VpaK11BI GGWCC 1 cut(s) 1077
XceI RCATGY 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 2 cut(s) 39, 916
XmiI GTMKAC 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 4 cut(s) 711, 864, 891, 1074
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.