Belongs to the NPH3 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31820 AT4G31820 |
| fragaria_vesca | FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 |
| malus_domestica | MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1 |
| prunus_persica | Prupe.1G393800_v2.0.a1 |
| pyrus_communis | pycom08g04650 pycom08g04660 pycom15g03780 |
| rosa_chinensis | RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411 |
| rosa_laevigata | RLG00000011434 |
| rosa_multiflora | Rmu_co8314217.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00168710 |
| rosa_rugosa | Rorug06G0288000 |
| rosa_samantha | Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900 |
| rosa_wichuraiana | Rw6G034990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 838 |
| AccBSI | CCGCTC | 1 cut(s) | 410 |
| AccI | GTMKAC | 1 cut(s) | 559 |
| AciI | CCGC | 3 cut(s) | 408, 581, 744 |
| AclWI | GGATC | 2 cut(s) | 368, 397 |
| AcoI | YGGCCR | 1 cut(s) | 656 |
| AcuI | CTGAAG | 2 cut(s) | 167, 719 |
| AfaI | GTAC | 1 cut(s) | 677 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 988 |
| AgsI | TTSAA | 8 cut(s) | 23, 50, 304, 370, 830, 1173, 1191, 1203 |
| AjnI | CCWGG | 2 cut(s) | 1079, 1180 |
| AluBI | AGCT | 5 cut(s) | 349, 383, 808, 863, 1137 |
| AluI | AGCT | 5 cut(s) | 349, 383, 808, 863, 1137 |
| Alw21I | GWGCWC | 2 cut(s) | 708, 1139 |
| Alw26I | GTCTC | 2 cut(s) | 6, 1136 |
| AlwI | GGATC | 2 cut(s) | 368, 397 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 179, 1066 |
| AoxI | GGCC | 1 cut(s) | 656 |
| ApeKI | GCWGC | 4 cut(s) | 791, 860, 1035, 1066 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 27 |
| AspLEI | GCGC | 1 cut(s) | 1049 |
| AspS9I | GGNCC | 1 cut(s) | 1077 |
| AsuC2I | CCSGG | 1 cut(s) | 1150 |
| AsuHPI | GGTGA | 2 cut(s) | 364, 404 |
| AsuNHI | GCTAGC | 1 cut(s) | 863 |
| AvaII | GGWCC | 1 cut(s) | 1077 |
| BanII | GRGCYC | 2 cut(s) | 877, 1139 |
| BbsI | GAAGAC | 2 cut(s) | 57, 155 |
| Bbv12I | GWGCWC | 2 cut(s) | 708, 1139 |
| BbvI | GCAGC | 4 cut(s) | 778, 872, 1047, 1053 |
| BccI | CCATC | 7 cut(s) | 116, 159, 662, 692, 745, 894, 1078 |
| BceAI | ACGGC | 2 cut(s) | 238, 671 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 315, 349, 1038, 1072 |
| BciT130I | CCWGG | 2 cut(s) | 1081, 1182 |
| BcnI | CCSGG | 1 cut(s) | 1150 |
| BcoDI | GTCTC | 2 cut(s) | 6, 1136 |
| BfaI | CTAG | 4 cut(s) | 711, 864, 891, 1074 |
| BfmI | CTRYAG | 1 cut(s) | 858 |
| BfuAI | ACCTGC | 1 cut(s) | 838 |
| BglII | AGATCT | 1 cut(s) | 854 |
| BisI | GCNGC | 4 cut(s) | 792, 861, 1036, 1067 |
| BlsI | GCNGC | 4 cut(s) | 793, 862, 1037, 1068 |
| Bme1390I | CCNGG | 3 cut(s) | 1081, 1150, 1182 |
| Bme18I | GGWCC | 1 cut(s) | 1077 |
| BmgT120I | GGNCC | 1 cut(s) | 1077 |
| BmrFI | CCNGG | 3 cut(s) | 1081, 1150, 1182 |
| BmsI | GCATC | 4 cut(s) | 175, 465, 778, 788 |
| BmtI | GCTAGC | 1 cut(s) | 867 |
| BpiI | GAAGAC | 2 cut(s) | 57, 155 |
| BpuEI | CTTGAG | 1 cut(s) | 232 |
| BpuMI | CCSGG | 1 cut(s) | 1150 |
| BsaBI | GATNNNNATC | 2 cut(s) | 72, 573 |
| BsaJI | CCNNGG | 2 cut(s) | 32, 783 |
| BsaWI | WCCGGW | 1 cut(s) | 1209 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 988 |
| Bse1I | ACTGG | 2 cut(s) | 195, 567 |
| Bse8I | GATNNNNATC | 2 cut(s) | 72, 573 |
| BseBI | CCWGG | 2 cut(s) | 1081, 1182 |
| BseDI | CCNNGG | 2 cut(s) | 32, 783 |
| BseGI | GGATG | 7 cut(s) | 127, 673, 760, 779, 793, 886, 1145 |
| BseJI | GATNNNNATC | 2 cut(s) | 72, 573 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 988 |
| BseMII | CTCAG | 2 cut(s) | 434, 625 |
| BseNI | ACTGG | 2 cut(s) | 195, 567 |
| BseRI | GAGGAG | 2 cut(s) | 359, 408 |
| BseXI | GCAGC | 4 cut(s) | 778, 872, 1047, 1053 |
| BsgI | GTGCAG | 1 cut(s) | 777 |
| BshFI | GGCC | 1 cut(s) | 658 |
| BsiHKAI | GWGCWC | 2 cut(s) | 708, 1139 |
| BsiSI | CCGG | 2 cut(s) | 1149, 1210 |
| BslFI | GGGAC | 2 cut(s) | 541, 616 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 988 |
| BsmAI | GTCTC | 2 cut(s) | 6, 1136 |
| BsmFI | GGGAC | 2 cut(s) | 541, 616 |
| BsmI | GAATGC | 1 cut(s) | 1216 |
| BsnI | GGCC | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 3 cut(s) | 708, 877, 1139 |
| Bsp1407I | TGTACA | 1 cut(s) | 675 |
| Bsp143I | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| Bsp19I | CCATGG | 1 cut(s) | 783 |
| BspACI | CCGC | 3 cut(s) | 408, 581, 744 |
| BspANI | GGCC | 1 cut(s) | 658 |
| BspCNI | CTCAG | 2 cut(s) | 433, 624 |
| BspMAI | CTGCAG | 1 cut(s) | 862 |
| BspMI | ACCTGC | 1 cut(s) | 838 |
| BspOI | GCTAGC | 1 cut(s) | 867 |
| BspPI | GGATC | 2 cut(s) | 368, 397 |
| BspQI | GCTCTTC | 1 cut(s) | 1025 |
| BsrBI | CCGCTC | 1 cut(s) | 410 |
| BsrGI | TGTACA | 1 cut(s) | 675 |
| BsrI | ACTGG | 2 cut(s) | 195, 567 |
| BssECI | CCNNGG | 2 cut(s) | 32, 783 |
| BssMI | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| BssT1I | CCWWGG | 2 cut(s) | 32, 783 |
| Bst2UI | CCWGG | 2 cut(s) | 1081, 1182 |
| Bst4CI | ACNGT | 2 cut(s) | 130, 772 |
| Bst6I | CTCTTC | 4 cut(s) | 350, 842, 993, 1025 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1066 |
| BstAUI | TGTACA | 1 cut(s) | 675 |
| BstC8I | GCNNGC | 2 cut(s) | 865, 959 |
| BstDEI | CTNAG | 2 cut(s) | 420, 611 |
| BstDSI | CCRYGG | 1 cut(s) | 783 |
| BstEII | GGTNACC | 1 cut(s) | 991 |
| BstF5I | GGATG | 7 cut(s) | 127, 673, 760, 779, 793, 886, 1145 |
| BstHHI | GCGC | 1 cut(s) | 1049 |
| BstKTI | GATC | 5 cut(s) | 76, 363, 405, 416, 857 |
| BstMAI | GTCTC | 2 cut(s) | 6, 1136 |
| BstMBI | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 587, 1032, 1044, 1066 |
| BstNI | CCWGG | 2 cut(s) | 1081, 1182 |
| BstNSI | RCATGY | 1 cut(s) | 1124 |
| BstPI | GGTNACC | 1 cut(s) | 991 |
| BstSCI | CCNGG | 3 cut(s) | 1079, 1148, 1180 |
| BstSFI | CTRYAG | 1 cut(s) | 858 |
| BstV1I | GCAGC | 4 cut(s) | 778, 872, 1047, 1053 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 155 |
| BstX2I | RGATCY | 1 cut(s) | 854 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 39 |
| BstYI | RGATCY | 1 cut(s) | 854 |
| BsuRI | GGCC | 1 cut(s) | 658 |
| BtgI | CCRYGG | 1 cut(s) | 783 |
| BtsCI | GGATG | 7 cut(s) | 127, 673, 760, 779, 793, 886, 1145 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 188, 777 |
| BveI | ACCTGC | 1 cut(s) | 838 |
| Cac8I | GCNNGC | 2 cut(s) | 865, 959 |
| CaiI | CAGNNNCTG | 2 cut(s) | 179, 1066 |
| CfoI | GCGC | 1 cut(s) | 1049 |
| Cfr13I | GGNCC | 1 cut(s) | 1077 |
| Csp6I | GTAC | 1 cut(s) | 676 |
| CviAII | CATG | 6 cut(s) | 377, 479, 593, 784, 1015, 1121 |
| CviQI | GTAC | 1 cut(s) | 676 |
| DdeI | CTNAG | 2 cut(s) | 420, 611 |
| DpnI | GATC | 5 cut(s) | 75, 362, 404, 415, 856 |
| DpnII | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| EaeI | YGGCCR | 1 cut(s) | 656 |
| Eam1104I | CTCTTC | 4 cut(s) | 350, 842, 993, 1025 |
| EarI | CTCTTC | 4 cut(s) | 350, 842, 993, 1025 |
| Ecl136II | GAGCTC | 1 cut(s) | 1137 |
| Eco130I | CCWWGG | 2 cut(s) | 32, 783 |
| Eco24I | GRGCYC | 2 cut(s) | 877, 1139 |
| Eco47I | GGWCC | 1 cut(s) | 1077 |
| Eco53kI | GAGCTC | 1 cut(s) | 1137 |
| Eco57I | CTGAAG | 2 cut(s) | 167, 719 |
| Eco91I | GGTNACC | 1 cut(s) | 991 |
| EcoICRI | GAGCTC | 1 cut(s) | 1137 |
| EcoO65I | GGTNACC | 1 cut(s) | 991 |
| EcoRII | CCWGG | 2 cut(s) | 1079, 1180 |
| EcoT14I | CCWWGG | 2 cut(s) | 32, 783 |
| EcoT22I | ATGCAT | 1 cut(s) | 480 |
| EcoT38I | GRGCYC | 2 cut(s) | 877, 1139 |
| ErhI | CCWWGG | 2 cut(s) | 32, 783 |
| FaeI | CATG | 6 cut(s) | 380, 482, 596, 787, 1018, 1124 |
| FaqI | GGGAC | 2 cut(s) | 541, 616 |
| FatI | CATG | 6 cut(s) | 376, 478, 592, 783, 1014, 1120 |
| FauI | CCCGC | 1 cut(s) | 415 |
| FauNDI | CATATG | 1 cut(s) | 56 |
| FblI | GTMKAC | 1 cut(s) | 559 |
| Fnu4HI | GCNGC | 4 cut(s) | 792, 861, 1036, 1067 |
| FokI | GGATG | 7 cut(s) | 134, 680, 766, 767, 800, 873, 1132 |
| FriOI | GRGCYC | 2 cut(s) | 877, 1139 |
| Fsp4HI | GCNGC | 4 cut(s) | 792, 861, 1036, 1067 |
| FspBI | CTAG | 4 cut(s) | 711, 864, 891, 1074 |
| GlaI | GCGC | 1 cut(s) | 1048 |
| GluI | GCNGC | 4 cut(s) | 792, 861, 1036, 1067 |
| HaeIII | GGCC | 1 cut(s) | 658 |
| HapII | CCGG | 2 cut(s) | 1149, 1210 |
| HhaI | GCGC | 1 cut(s) | 1049 |
| Hin1II | CATG | 6 cut(s) | 380, 482, 596, 787, 1018, 1124 |
| Hin6I | GCGC | 1 cut(s) | 1047 |
| HinP1I | GCGC | 1 cut(s) | 1047 |
| HindIII | AAGCTT | 1 cut(s) | 381 |
| HinfI | GANTC | 7 cut(s) | 176, 332, 463, 647, 819, 1086, 1187 |
| HpaII | CCGG | 2 cut(s) | 1149, 1210 |
| HphI | GGTGA | 2 cut(s) | 364, 404 |
| Hpy166II | GTNNAC | 1 cut(s) | 560 |
| Hpy188I | TCNGA | 6 cut(s) | 147, 199, 259, 423, 818, 1141 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 511, 644, 665, 760, 1006, 1203 |
| Hpy8I | GTNNAC | 1 cut(s) | 560 |
| HpyAV | CCTTC | 4 cut(s) | 103, 694, 982, 1108 |
| HpyCH4III | ACNGT | 2 cut(s) | 130, 772 |
| HpyCH4IV | ACGT | 2 cut(s) | 542, 931 |
| HpyCH4V | TGCA | 8 cut(s) | 158, 188, 376, 478, 590, 794, 860, 957 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 587, 1032, 1044, 1066 |
| HpyF3I | CTNAG | 2 cut(s) | 420, 611 |
| HpySE526I | ACGT | 2 cut(s) | 542, 931 |
| Hsp92II | CATG | 6 cut(s) | 380, 482, 596, 787, 1018, 1124 |
| HspAI | GCGC | 1 cut(s) | 1047 |
| Kzo9I | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| LguI | GCTCTTC | 1 cut(s) | 1025 |
| LmnI | GCTCC | 4 cut(s) | 323, 346, 703, 813 |
| Lsp1109I | GCAGC | 4 cut(s) | 778, 872, 1047, 1053 |
| LweI | GCATC | 4 cut(s) | 175, 465, 778, 788 |
| MaeI | CTAG | 4 cut(s) | 711, 864, 891, 1074 |
| MaeII | ACGT | 2 cut(s) | 542, 931 |
| MaeIII | GTNAC | 4 cut(s) | 392, 893, 932, 991 |
| MalI | GATC | 5 cut(s) | 75, 362, 404, 415, 856 |
| MbiI | CCGCTC | 1 cut(s) | 410 |
| MboI | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| MflI | RGATCY | 1 cut(s) | 854 |
| MhlI | GDGCHC | 3 cut(s) | 708, 877, 1139 |
| MluCI | AATT | 7 cut(s) | 4, 18, 237, 585, 639, 660, 1097 |
| MlyI | GAGTC | 3 cut(s) | 341, 472, 828 |
| MmeI | TCCRAC | 3 cut(s) | 45, 301, 1190 |
| Mph1103I | ATGCAT | 1 cut(s) | 480 |
| MroXI | GAANNNNTTC | 1 cut(s) | 27 |
| MseI | TTAA | 3 cut(s) | 606, 716, 879 |
| MslI | CAYNNNNRTG | 1 cut(s) | 891 |
| MspI | CCGG | 2 cut(s) | 1149, 1210 |
| MspR9I | CCNGG | 3 cut(s) | 1081, 1150, 1182 |
| Mva1269I | GAATGC | 1 cut(s) | 1216 |
| MvaI | CCWGG | 2 cut(s) | 1081, 1182 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 587, 1032, 1044, 1066 |
| NciI | CCSGG | 1 cut(s) | 1150 |
| NcoI | CCATGG | 1 cut(s) | 783 |
| NdeI | CATATG | 1 cut(s) | 56 |
| NdeII | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| NheI | GCTAGC | 1 cut(s) | 863 |
| NlaIII | CATG | 6 cut(s) | 380, 482, 596, 787, 1018, 1124 |
| NmuCI | GTSAC | 3 cut(s) | 392, 893, 932 |
| NsiI | ATGCAT | 1 cut(s) | 480 |
| NspI | RCATGY | 1 cut(s) | 1124 |
| PciSI | GCTCTTC | 1 cut(s) | 1025 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 82 |
| PctI | GAATGC | 1 cut(s) | 1216 |
| PdmI | GAANNNNTTC | 1 cut(s) | 27 |
| PfeI | GAWTC | 4 cut(s) | 176, 647, 1086, 1187 |
| PfoI | TCCNGGA | 2 cut(s) | 1079, 1148 |
| PkrI | GCNGC | 4 cut(s) | 793, 862, 1037, 1068 |
| PleI | GAGTC | 3 cut(s) | 340, 471, 827 |
| PpsI | GAGTC | 3 cut(s) | 340, 471, 827 |
| Psp124BI | GAGCTC | 1 cut(s) | 1139 |
| Psp6I | CCWGG | 2 cut(s) | 1079, 1180 |
| PspEI | GGTNACC | 1 cut(s) | 991 |
| PspGI | CCWGG | 2 cut(s) | 1079, 1180 |
| PspPI | GGNCC | 1 cut(s) | 1077 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 259, 291 |
| PstI | CTGCAG | 1 cut(s) | 862 |
| PstNI | CAGNNNCTG | 2 cut(s) | 179, 1066 |
| PsuI | RGATCY | 1 cut(s) | 854 |
| RsaI | GTAC | 1 cut(s) | 677 |
| RsaNI | GTAC | 1 cut(s) | 676 |
| RseI | CAYNNNNRTG | 1 cut(s) | 891 |
| SacI | GAGCTC | 1 cut(s) | 1139 |
| SapI | GCTCTTC | 1 cut(s) | 1025 |
| SaqAI | TTAA | 3 cut(s) | 606, 716, 879 |
| SatI | GCNGC | 4 cut(s) | 792, 861, 1036, 1067 |
| Sau3AI | GATC | 5 cut(s) | 73, 360, 402, 413, 854 |
| Sau96I | GGNCC | 1 cut(s) | 1077 |
| SchI | GAGTC | 3 cut(s) | 341, 472, 828 |
| ScrFI | CCNGG | 3 cut(s) | 1081, 1150, 1182 |
| SduI | GDGCHC | 3 cut(s) | 708, 877, 1139 |
| SfaNI | GCATC | 4 cut(s) | 175, 465, 778, 788 |
| SfcI | CTRYAG | 1 cut(s) | 858 |
| SinI | GGWCC | 1 cut(s) | 1077 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 891 |
| SmlI | CTYRAG | 1 cut(s) | 211 |
| SmoI | CTYRAG | 1 cut(s) | 211 |
| Sse9I | AATT | 7 cut(s) | 4, 18, 237, 585, 639, 660, 1097 |
| SsiI | CCGC | 3 cut(s) | 408, 581, 744 |
| SspMI | CTAG | 4 cut(s) | 711, 864, 891, 1074 |
| SstI | GAGCTC | 1 cut(s) | 1139 |
| StyD4I | CCNGG | 3 cut(s) | 1079, 1148, 1180 |
| StyI | CCWWGG | 2 cut(s) | 32, 783 |
| TaaI | ACNGT | 2 cut(s) | 130, 772 |
| TaiI | ACGT | 2 cut(s) | 545, 934 |
| TaqI | TCGA | 6 cut(s) | 10, 107, 412, 510, 687, 871 |
| TasI | AATT | 7 cut(s) | 4, 18, 237, 585, 639, 660, 1097 |
| TatI | WGTACW | 1 cut(s) | 675 |
| TfiI | GAWTC | 4 cut(s) | 176, 647, 1086, 1187 |
| Tru1I | TTAA | 3 cut(s) | 606, 716, 879 |
| Tru9I | TTAA | 3 cut(s) | 606, 716, 879 |
| TscAI | CASTG | 3 cut(s) | 133, 195, 777 |
| TseFI | GTSAC | 3 cut(s) | 392, 893, 932 |
| TseI | GCWGC | 4 cut(s) | 791, 860, 1035, 1066 |
| Tsp45I | GTSAC | 3 cut(s) | 392, 893, 932 |
| TspDTI | ATGAA | 7 cut(s) | 17, 267, 393, 495, 534, 1001, 1031 |
| TspRI | CASTG | 3 cut(s) | 133, 195, 777 |
| VpaK11BI | GGWCC | 1 cut(s) | 1077 |
| XceI | RCATGY | 1 cut(s) | 1124 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 39, 916 |
| XmiI | GTMKAC | 1 cut(s) | 559 |
| XmnI | GAANNNNTTC | 1 cut(s) | 27 |
| XspI | CTAG | 4 cut(s) | 711, 864, 891, 1074 |
| Zsp2I | ATGCAT | 1 cut(s) | 480 |