Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Forward (+)

3526285 .. 3528313

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGTTTATGAAGCTGGGGTCCAAGCCTGATGCATTTCAGGCTGATGGCAAGTCTATCAGATATGTGTCATCTGACTTGCAAACAGATGTCGTTATTAATGTTGGGGAAGTGAAGTTTTACCTTCACAAGTTCCCTCTCTTGTCCAAGAGCAATCGCCTGCAAAAACTAGTATCTGAAGCCAACGACGATTCTGAAGAAGTTGACATGGTTGATTTTCCTGGTGGGCCAAAATCCTTTGAAATTTGTGCAAAGTTTTGCTATGGAATGACTGTTACTCTGAACGCTTACAATGTTGTGGCTGCTCGTTGTGCTGCTGAGTATCTGGAGATGACCGAGGATGTTGATCGATCAGTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

4.95

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	26 - 115	1.4e-08	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	2 cut(s)	198, 216
AgsI	TTSAA	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	302, 314
ApoI	RAATTY	1 cut(s)	243
AseI	ATTAAT	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	21, 227
AvaII	GGWCC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	289, 301
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	222
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	303, 315
BlsI	GCNGC	2 cut(s)	304, 316
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	2 cut(s)	21, 227
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	289, 301
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	349
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	346, 350
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	346, 350
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	349, 353
BstMBI	GATC	2 cut(s)	346, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 311
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	289, 301
Bsu15I	ATCGAT	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	21, 227
ClaI	ATCGAT	1 cut(s)	349
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	6 cut(s)	16, 28, 44, 182, 229, 302
CviKI_1	RGCY	6 cut(s)	16, 28, 44, 182, 229, 302
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	348, 352
DpnII	GATC	2 cut(s)	346, 350
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	198, 216
EcoRII	CCWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	1 cut(s)	211
FaiI	YATR	4 cut(s)	11, 66, 209, 264
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	303, 315
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	303, 315
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	303, 315
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	62, 76, 178, 196, 282
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	35, 82, 163, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 311
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	346, 350
LpnPI	CCDG	7 cut(s)	2, 26, 42, 173, 207, 234, 311
Lsp1109I	GCAGC	2 cut(s)	289, 301
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	274, 355
MalI	GATC	2 cut(s)	348, 352
MboI	GATC	2 cut(s)	346, 350
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	2 cut(s)	147, 331
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	41, 311
NdeII	GATC	2 cut(s)	346, 350
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	304, 316
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	21, 227
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	303, 315
Sau3AI	GATC	2 cut(s)	346, 350
Sau96I	GGNCC	2 cut(s)	21, 227
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	3 cut(s)	18, 126, 362
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	21
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	349
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	2 cut(s)	302, 314
TspDTI	ATGAA	2 cut(s)	17, 26
VpaK11BI	GGWCC	1 cut(s)	21
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	1 cut(s)	243
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.