Prupe.1G393800_v2.0.a1

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
35047053 .. 35052201
5149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G393800.1

Sequence Viewer

Length: 1851 bp
ATGAAGTTTATGAAGTTGGGGTCCAAGCCTGATGCGTTTCAAGCTGATGGGAAGTCTATCAGATATGTGTCATCTGAATTGGCAACAGATGTCATTATAAATGTCGGGGAAGTGAAGTTTTATCTTCACAAGTTCCCTCTCTTGTCCAAGAGCAATCGCCTGCAAAAACTAGTATCTAAGGCCAATGAAGAGAATTCTGAAGAAGTTTACATGGTTGATTTTCCTGGTGGGCCAAAATCTTTTGAAATTTGTGCAAAATTTTGCTATGGAATGACTGTTACTCTCAATGCTTACAATGTTGTGGCTGCTCGTTGCGCTGCTGAGTATCTGGAGATGACTGAGGATGTTGATCGCAGTAACCTAGTATTCAAAATTGAGGTTTTCCTTAACTCAAGTATCTTCCGTAGCTGGAAAGATTCCATTATTGTTCTCCAAACCACCAAACCTCTTCTGTCATGGGCTGAGGATCTGAAGATTGTTGGAAGATGCATAGATTCAATTGCTTCTAAAACATCTGTAGACCCTGCCAACATCAGCTGGTCCTACACATATAACCGAAAATTAGCAGAGACTGATAAAATTGTGGAAGAAGGGATGAATTATCGAGTTGAAAAAGTTCCCAGGGATTGGTGGGTTGAAGATATATGTGAGCTGGATATTGATCTCTACAAGCGAGTTATGATTGCTGTGAAATCAAAGGGAAGAATGGATGGTGCTGTTATTGGGGAGGCCCTGAAAACTTACGCAGTTAGATGGTTGCCAGATTCTGTTGATGCACTGATTTCTGATGAGCATGCCTTGAGGAACAAATCTCTGGTAGAAACAATTATTTGCTTATTGCCTTCTGACAAAGGTATGGGTTGTTCATGCAGTTTCTTGCTGAAACTTTTGAAAGTTTCTATTTTGGTTGGAGCTGACTACTCATTGAGGGAGGATTTGGTGAAGAGGATCAGTTTGAAGTTGCACGAAGCTCGTATTGTTGATTTATTGATCCCAGCTCGATCTCCTCAAATTACTATATATGATGTTGAATTGGTTCATTCTGTTGTGAATCAGTTTCTGATGCATGAAAAATGTAACTGGAATTTGGATGTGGTTGAGAAAAATGAAAAGGGGAGTGATAAGTTTATATTAGGGCATGGATCATTGTTGAGTGTTGGTAGACTGATTGATGGGTATCTTGCCGAAATTGCACATGACCCAAATCTTAACCTCTCTAGTTTCATAGACTTATCACAATTGATTCCTGAGTCGGCAAGGCCAATTCATGATGGATTGTACAAAGCCATTGACATCTACCTGAAGGAGCACCCTAGTTTGACAAAGGCTGAAAGGAAAAGAATATGTGGATTAATGAATGTCAAGAAACTGACAATGGAAGCGTCGATGGATGCTGCACAGAATGAGCTGCTTCCACTCCGAGTTGTTGTTCAAGTTCTCTTTTTTGAGCAGGTAAGATCTGCAGCTGGCGTTCGAGCTGCTAACAACCATCCCAGTGATGCTTCGCTTTCCACGACAAATTTGGATGAAGAATGCAACAAGATGGCGTTGGCAGAAGAAGAAAACTGCAAACCTCTGGGGAAGCATATGAGCGAAATTAAGGTAACTGAAGAGTTCCAGAAGAACGGGAAATTGGGCAAGAAGAACAGCAAAAACAGTAGAAGTGGTGTGCAATTGTTGCCGTCTAGGTCAAGGAGAATCTTTGATAAATTATGGTCTGTGGGTAAGGGGCAGCATGTGGAGAACAGGAGCTCTGAGACATCTGGGAGTTCTCAGAGTCCAACTTCAATTGTTCCTGGTGATACAAAGTCTGTTTCATCTTCAAGACACAGGAGGCATTCTATCTCCTAG

Protein Analysis

617

Amino Acids

69.09

Weight (kDa)

8.1

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 1441
AccB7I CCANNNNNTGG 1 cut(s) 627
AccI GTMKAC 2 cut(s) 519, 1162
AclWI GGATC 4 cut(s) 474, 956, 985, 1150
AcsI RAATTY 5 cut(s) 193, 246, 257, 1084, 1519
AcuI CTGAAG 4 cut(s) 219, 491, 1322, 1629
AfaI GTAC 1 cut(s) 1280
AfiI CCNNNNNNNGG 1 cut(s) 627
AhlI ACTAGT 1 cut(s) 169
AjnI CCWGG 3 cut(s) 223, 620, 1795
AjuI GAANNNNNNNTTGG 2 cut(s) 1616, 1648
Alw21I GWGCWC 2 cut(s) 1311, 1754
Alw26I GTCTC 2 cut(s) 563, 1751
AlwI GGATC 4 cut(s) 474, 956, 985, 1150
AlwNI CAGNNNCTG 3 cut(s) 572, 767, 1060
AoxI GGCC 4 cut(s) 180, 230, 729, 1259
ApeKI GCWGC 7 cut(s) 305, 317, 1394, 1408, 1463, 1478, 1732
ApoI RAATTY 5 cut(s) 193, 246, 257, 1084, 1519
AseI ATTAAT 1 cut(s) 1352
Asp700I GAANNNNTTC 2 cut(s) 615, 1035
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 4 cut(s) 21, 230, 540, 730
AsuHPI GGTGA 2 cut(s) 952, 1811
AvaII GGWCC 2 cut(s) 21, 540
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BanII GRGCYC 1 cut(s) 1754
Bbv12I GWGCWC 2 cut(s) 1311, 1754
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 7 cut(s) 292, 304, 1381, 1395, 1465, 1475, 1744
BccI CCATC 8 cut(s) 41, 704, 747, 1166, 1265, 1381, 1497, 1537
BceAI ACGGC 1 cut(s) 1666
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciT130I CCWGG 3 cut(s) 225, 622, 1797
BcoDI GTCTC 2 cut(s) 563, 1751
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 6 cut(s) 170, 362, 1218, 1314, 1686, 1849
BfmI CTRYAG 2 cut(s) 516, 1461
BfuAI ACCTGC 1 cut(s) 1441
BglII AGATCT 1 cut(s) 1457
BisI GCNGC 7 cut(s) 306, 318, 1395, 1409, 1464, 1479, 1733
BlsI GCNGC 7 cut(s) 307, 319, 1396, 1410, 1465, 1480, 1734
Bme1390I CCNGG 3 cut(s) 225, 622, 1797
Bme18I GGWCC 2 cut(s) 21, 540
BmgT120I GGNCC 4 cut(s) 21, 230, 540, 730
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 3 cut(s) 225, 622, 1797
BmrI ACTGGG 1 cut(s) 1488
BmsI GCATC 6 cut(s) 22, 476, 763, 1053, 1381, 1489
BmuI ACTGGG 1 cut(s) 1488
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 376, 820
BsaBI GATNNNNATC 3 cut(s) 348, 660, 1176
BsaJI CCNNGG 2 cut(s) 620, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 627
Bse1I ACTGG 2 cut(s) 1085, 1494
Bse8I GATNNNNATC 3 cut(s) 348, 660, 1176
BseBI CCWGG 3 cut(s) 225, 622, 1797
BseDI CCNNGG 2 cut(s) 620, 621
BseGI GGATG 7 cut(s) 349, 600, 715, 1096, 1396, 1489, 1531
BseJI GATNNNNATC 3 cut(s) 348, 660, 1176
BseLI CCNNNNNNNGG 1 cut(s) 627
BseMII CTCAG 6 cut(s) 312, 330, 453, 1239, 1746, 1787
BseNI ACTGG 2 cut(s) 1085, 1494
BseRI GAGGAG 1 cut(s) 996
BseXI GCAGC 7 cut(s) 292, 304, 1381, 1395, 1465, 1475, 1744
BseYI CCCAGC 1 cut(s) 994
BsgI GTGCAG 1 cut(s) 1380
BshFI GGCC 4 cut(s) 182, 232, 731, 1261
BsiHKAI GWGCWC 2 cut(s) 1311, 1754
BslI CCNNNNNNNGG 1 cut(s) 627
BsmAI GTCTC 2 cut(s) 563, 1751
BsmI GAATGC 2 cut(s) 1538, 1837
BsnI GGCC 4 cut(s) 182, 232, 731, 1261
Bsp1286I GDGCHC 2 cut(s) 1311, 1754
Bsp1407I TGTACA 1 cut(s) 1278
Bsp143I GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
BspANI GGCC 4 cut(s) 182, 232, 731, 1261
BspCNI CTCAG 6 cut(s) 313, 331, 454, 1240, 1747, 1786
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 1465
BspMI ACCTGC 1 cut(s) 1441
BspPI GGATC 4 cut(s) 474, 956, 985, 1150
BsrGI TGTACA 1 cut(s) 1278
BsrI ACTGG 2 cut(s) 1085, 1494
BssECI CCNNGG 2 cut(s) 620, 621
BssMI GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
Bst2UI CCWGG 3 cut(s) 225, 622, 1797
Bst4CI ACNGT 2 cut(s) 277, 1658
Bst6I CTCTTC 4 cut(s) 183, 453, 938, 1605
BstAPI GCANNNNNTGC 1 cut(s) 1678
BstAUI TGTACA 1 cut(s) 1278
BstC8I GCNNGC 3 cut(s) 161, 795, 1468
BstDEI CTNAG 7 cut(s) 177, 321, 339, 462, 1248, 1755, 1773
BstF5I GGATG 7 cut(s) 349, 600, 715, 1096, 1396, 1489, 1531
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 8 cut(s) 352, 469, 664, 951, 993, 1004, 1145, 1460
BstMAI GTCTC 2 cut(s) 563, 1751
BstMBI GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
BstMWI GCNNNNNNNGC 4 cut(s) 41, 314, 1190, 1678
BstNI CCWGG 3 cut(s) 225, 622, 1797
BstNSI RCATGY 2 cut(s) 797, 1739
BstSCI CCNGG 3 cut(s) 223, 620, 1795
BstSFI CTRYAG 2 cut(s) 516, 1461
BstV1I GCAGC 7 cut(s) 292, 304, 1381, 1395, 1465, 1475, 1744
BstX2I RGATCY 2 cut(s) 466, 1457
BstYI RGATCY 2 cut(s) 466, 1457
BsuRI GGCC 4 cut(s) 182, 232, 731, 1261
BtsCI GGATG 7 cut(s) 349, 600, 715, 1096, 1396, 1489, 1531
BtsIMutI CAGTG 2 cut(s) 776, 1501
BveI ACCTGC 1 cut(s) 1441
Cac8I GCNNGC 3 cut(s) 161, 795, 1468
CaiI CAGNNNCTG 3 cut(s) 572, 767, 1060
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 4 cut(s) 21, 230, 540, 730
CseI GACGC 1 cut(s) 1371
Csp6I GTAC 1 cut(s) 1279
CviAII CATG 9 cut(s) 211, 456, 794, 867, 1067, 1139, 1196, 1268, 1736
CviQI GTAC 1 cut(s) 1279
DdeI CTNAG 7 cut(s) 177, 321, 339, 462, 1248, 1755, 1773
DpnI GATC 8 cut(s) 351, 468, 663, 950, 992, 1003, 1144, 1459
DpnII GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
Eam1104I CTCTTC 4 cut(s) 183, 453, 938, 1605
EarI CTCTTC 4 cut(s) 183, 453, 938, 1605
Ecl136II GAGCTC 1 cut(s) 1752
Eco24I GRGCYC 1 cut(s) 1754
Eco47I GGWCC 2 cut(s) 21, 540
Eco53kI GAGCTC 1 cut(s) 1752
Eco57I CTGAAG 4 cut(s) 219, 491, 1322, 1629
EcoICRI GAGCTC 1 cut(s) 1752
EcoO109I RGGNCCY 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 223, 620, 1795
EcoT22I ATGCAT 2 cut(s) 491, 1068
EcoT38I GRGCYC 1 cut(s) 1754
FaeI CATG 9 cut(s) 214, 459, 797, 870, 1070, 1142, 1199, 1271, 1739
FatI CATG 9 cut(s) 210, 455, 793, 866, 1066, 1138, 1195, 1267, 1735
FauNDI CATATG 1 cut(s) 1587
FblI GTMKAC 2 cut(s) 519, 1162
Fnu4HI GCNGC 7 cut(s) 306, 318, 1395, 1409, 1464, 1479, 1733
FokI GGATG 7 cut(s) 356, 607, 722, 1103, 1403, 1476, 1538
FriOI GRGCYC 1 cut(s) 1754
Fsp4HI GCNGC 7 cut(s) 306, 318, 1395, 1409, 1464, 1479, 1733
FspBI CTAG 6 cut(s) 170, 362, 1218, 1314, 1686, 1849
GlaI GCGC 1 cut(s) 316
GluI GCNGC 7 cut(s) 306, 318, 1395, 1409, 1464, 1479, 1733
GsaI CCCAGC 1 cut(s) 998
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 4 cut(s) 182, 232, 731, 1261
HgaI GACGC 1 cut(s) 1371
HhaI GCGC 1 cut(s) 317
Hin1II CATG 9 cut(s) 214, 459, 797, 870, 1070, 1142, 1199, 1271, 1739
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 8 cut(s) 416, 494, 764, 1051, 1243, 1250, 1698, 1777
HphI GGTGA 2 cut(s) 952, 1811
Hpy166II GTNNAC 3 cut(s) 208, 520, 1163
Hpy188III TCNNGA 6 cut(s) 329, 1247, 1268, 1363, 1618, 1824
Hpy8I GTNNAC 3 cut(s) 208, 520, 1163
Hpy99I CGWCG 1 cut(s) 1387
HpyAV CCTTC 3 cut(s) 584, 852, 1297
HpyCH4III ACNGT 2 cut(s) 277, 1658
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 314, 1190, 1678
HpyF3I CTNAG 7 cut(s) 177, 321, 339, 462, 1248, 1755, 1773
Hsp92II CATG 9 cut(s) 214, 459, 797, 870, 1070, 1142, 1199, 1271, 1739
HspAI GCGC 1 cut(s) 315
Kzo9I GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
LmnI GCTCC 3 cut(s) 911, 1306, 1749
Lsp1109I GCAGC 7 cut(s) 292, 304, 1381, 1395, 1465, 1475, 1744
LweI GCATC 6 cut(s) 22, 476, 763, 1053, 1381, 1489
MaeI CTAG 6 cut(s) 170, 362, 1218, 1314, 1686, 1849
MaeIII GTNAC 4 cut(s) 277, 356, 1076, 1603
MalI GATC 8 cut(s) 351, 468, 663, 950, 992, 1003, 1144, 1459
MboI GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
MfeI CAATTG 4 cut(s) 498, 1238, 1673, 1788
MflI RGATCY 2 cut(s) 466, 1457
MhlI GDGCHC 2 cut(s) 1311, 1754
MlyI GAGTC 2 cut(s) 1259, 1786
MmeI TCCRAC 3 cut(s) 460, 889, 1805
Mph1103I ATGCAT 2 cut(s) 491, 1068
MroXI GAANNNNTTC 2 cut(s) 615, 1035
MseI TTAA 4 cut(s) 387, 1209, 1352, 1599
MslI CAYNNNNRTG 1 cut(s) 1494
MspA1I CMGCKG 2 cut(s) 537, 1466
MspR9I CCNGG 3 cut(s) 225, 622, 1797
MunI CAATTG 4 cut(s) 498, 1238, 1673, 1788
Mva1269I GAATGC 2 cut(s) 1538, 1837
MvaI CCWGG 3 cut(s) 225, 622, 1797
MwoI GCNNNNNNNGC 4 cut(s) 41, 314, 1190, 1678
NdeI CATATG 1 cut(s) 1587
NdeII GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
NlaIII CATG 9 cut(s) 214, 459, 797, 870, 1070, 1142, 1199, 1271, 1739
NlaIV GGNNCC 1 cut(s) 22
NsiI ATGCAT 2 cut(s) 491, 1068
NspI RCATGY 2 cut(s) 797, 1739
PaeI GCATGC 1 cut(s) 797
PagI TCATGA 1 cut(s) 1267
PasI CCCWGGG 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 1511
PctI GAATGC 2 cut(s) 1538, 1837
PdmI GAANNNNTTC 2 cut(s) 615, 1035
PfeI GAWTC 6 cut(s) 416, 494, 764, 1051, 1243, 1698
PflMI CCANNNNNTGG 1 cut(s) 627
PkrI GCNGC 7 cut(s) 307, 319, 1396, 1410, 1465, 1480, 1734
PleI GAGTC 2 cut(s) 1258, 1785
PpsI GAGTC 2 cut(s) 1258, 1785
PshBI ATTAAT 1 cut(s) 1352
PsiI TTATAA 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 1754
Psp6I CCWGG 3 cut(s) 223, 620, 1795
PspFI CCCAGC 1 cut(s) 994
PspGI CCWGG 3 cut(s) 223, 620, 1795
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 4 cut(s) 21, 230, 540, 730
PsrI GAACNNNNNNTAC 2 cut(s) 847, 879
PstI CTGCAG 1 cut(s) 1465
PstNI CAGNNNCTG 3 cut(s) 572, 767, 1060
PsuI RGATCY 2 cut(s) 466, 1457
PvuII CAGCTG 2 cut(s) 537, 1466
RsaI GTAC 1 cut(s) 1280
RsaNI GTAC 1 cut(s) 1279
RseI CAYNNNNRTG 1 cut(s) 1494
SacI GAGCTC 1 cut(s) 1754
SaqAI TTAA 4 cut(s) 387, 1209, 1352, 1599
SatI GCNGC 7 cut(s) 306, 318, 1395, 1409, 1464, 1479, 1733
Sau3AI GATC 8 cut(s) 349, 466, 661, 948, 990, 1001, 1142, 1457
Sau96I GGNCC 4 cut(s) 21, 230, 540, 730
SchI GAGTC 2 cut(s) 1259, 1786
ScrFI CCNGG 3 cut(s) 225, 622, 1797
SduI GDGCHC 2 cut(s) 1311, 1754
SfaNI GCATC 6 cut(s) 22, 476, 763, 1053, 1381, 1489
SfcI CTRYAG 2 cut(s) 516, 1461
SinI GGWCC 2 cut(s) 21, 540
SmiMI CAYNNNNRTG 1 cut(s) 1494
SmlI CTYRAG 2 cut(s) 391, 799
SmoI CTYRAG 2 cut(s) 391, 799
SpeI ACTAGT 1 cut(s) 169
SphI GCATGC 1 cut(s) 797
SspMI CTAG 6 cut(s) 170, 362, 1218, 1314, 1686, 1849
SstI GAGCTC 1 cut(s) 1754
StyD4I CCNGG 3 cut(s) 223, 620, 1795
TaaI ACNGT 2 cut(s) 277, 1658
TaqI TCGA 4 cut(s) 604, 1000, 1385, 1474
TatI WGTACW 1 cut(s) 1278
TfiI GAWTC 6 cut(s) 416, 494, 764, 1051, 1243, 1698
Tru1I TTAA 4 cut(s) 387, 1209, 1352, 1599
Tru9I TTAA 4 cut(s) 387, 1209, 1352, 1599
TscAI CASTG 2 cut(s) 783, 1501
TseI GCWGC 7 cut(s) 305, 317, 1394, 1408, 1463, 1478, 1732
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 2 cut(s) 783, 1501
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 2 cut(s) 21, 540
VspI ATTAAT 1 cut(s) 1352
XapI RAATTY 5 cut(s) 193, 246, 257, 1084, 1519
XceI RCATGY 2 cut(s) 797, 1739
XcmI CCANNNNNNNNNTGG 1 cut(s) 1519
XmiI GTMKAC 2 cut(s) 519, 1162
XmnI GAANNNNTTC 2 cut(s) 615, 1035
XspI CTAG 6 cut(s) 170, 362, 1218, 1314, 1686, 1849
Zsp2I ATGCAT 2 cut(s) 491, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.