Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Reverse (-)

2847106 .. 2848106

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1040500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCGACACCCTAATTTGACAAAGGCTGAAAGGAAAAGAATATGCGCATTGATGGACGTCAAGAAACTTACAGTGGAGGCATCGATGGATGCTGCACAGAACGAGCAGCTCCCACTTCGAGTCGTTGTTCAAGTTCTCTTCTTTGAGCAGATAAGATCTGCAGCTAGCGTTCAAGCCCTTAACAACCATCCCAGTGACACTTCACTTTCCACAACAAATTTGGACGAGGAATGTGAGAAGATAGCAGAAGAAAACTGCAAGCCGTTGGGAAAACAGATGAGCCAAATGAAGGTAACTGAAGAGTTCCAGAAGAACACAAAACTGGCAAAGAACAACAGCAAAAACAGCCGAAGTGGTGCGCAATTGCTTCCATCTAGGTCAAGGAGAATCTTCGATAAATTGTGGTCTGTGGGGAAGGGGCATGTAGAGAACAAGAGCTCCGAGACATCTGGGAGTTCTCATAGTCCAACTTCAAATGTTCCTGGTGATTCAAAGTCGGTTTCATCTTCGAGACACAGGAGGTATTCCATCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

179

Amino Acids

19.83

Weight (kDa)

9.68

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	2 - 28	1.1e-06	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
Acc16I	TGCGCA	2 cut(s)	46, 360
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	131, 173, 474, 492
AjnI	CCWGG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	3 cut(s)	109, 164, 438
AluI	AGCT	3 cut(s)	109, 164, 438
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	437, 505
ApeKI	GCWGC	3 cut(s)	92, 106, 161
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	47, 361
AsuHPI	GGTGA	1 cut(s)	497
AsuNHI	GCTAGC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	3 cut(s)	79, 118, 173
BccI	CCATC	5 cut(s)	46, 79, 195, 379, 536
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	437, 505
BfaI	CTAG	2 cut(s)	165, 375
BfmI	CTRYAG	1 cut(s)	159
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	3 cut(s)	93, 107, 162
BlsI	GCNGC	3 cut(s)	94, 108, 163
Bme1390I	CCNGG	1 cut(s)	483
BmrFI	CCNGG	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	79, 89
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	192, 327
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	83
BseGI	GGATG	2 cut(s)	94, 187
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	192, 327
BseXI	GCAGC	3 cut(s)	79, 118, 173
BsgI	GTGCAG	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	437, 505
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	155
BspDI	ATCGAT	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	163
BspOI	GCTAGC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	192, 327
BssMI	GATC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	143, 294
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	166, 260
BstF5I	GGATG	2 cut(s)	94, 187
BstHHI	GCGC	2 cut(s)	47, 361
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	2 cut(s)	437, 505
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	79, 118, 173
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	94, 187
BtsIMutI	CAGTG	2 cut(s)	78, 199
Cac8I	GCNNGC	2 cut(s)	166, 260
CfoI	GCGC	2 cut(s)	47, 361
ClaI	ATCGAT	1 cut(s)	83
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	8 cut(s)	26, 109, 164, 176, 262, 282, 348, 438
CviKI_1	RGCY	8 cut(s)	26, 109, 164, 176, 262, 282, 348, 438
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	143, 294
EarI	CTCTTC	2 cut(s)	143, 294
Ecl136II	GAGCTC	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	440
FaeI	CATG	1 cut(s)	425
FaiI	YATR	3 cut(s)	43, 423, 462
FatI	CATG	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	93, 107, 162
FokI	GGATG	2 cut(s)	101, 174
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	93, 107, 162
FspAI	RTGCGCAY	1 cut(s)	46
FspBI	CTAG	2 cut(s)	165, 375
FspI	TGCGCA	2 cut(s)	46, 360
GlaI	GCGC	2 cut(s)	46, 360
GluI	GCNGC	3 cut(s)	93, 107, 162
HhaI	GCGC	2 cut(s)	47, 361
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	2 cut(s)	45, 359
HinP1I	GCGC	2 cut(s)	45, 359
HinfI	GANTC	3 cut(s)	120, 387, 488
HphI	GGTGA	1 cut(s)	497
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	61, 307, 510
HpyAV	CCTTC	2 cut(s)	283, 409
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	95, 161, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	2 cut(s)	45, 359
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	114, 443
LpnPI	CCDG	7 cut(s)	205, 308, 320, 435, 468, 495, 502
Lsp1109I	GCAGC	3 cut(s)	79, 118, 173
LweI	GCATC	2 cut(s)	79, 89
MaeI	CTAG	2 cut(s)	165, 375
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	194, 292
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	7 cut(s)	130, 250, 260, 311, 322, 382, 498
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	4 cut(s)	13, 217, 362, 398
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	3 cut(s)	70, 220, 513
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	1 cut(s)	155
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	194
NsbI	TGCGCA	2 cut(s)	46, 360
NspI	RCATGY	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	387, 488
PkrI	GCNGC	3 cut(s)	94, 108, 163
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	93, 107, 162
Sau3AI	GATC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	7 cut(s)	60, 111, 166, 294, 380, 440, 524
SfaNI	GCATC	2 cut(s)	79, 89
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	4 cut(s)	13, 217, 362, 398
SspMI	CTAG	2 cut(s)	165, 375
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	4 cut(s)	83, 118, 393, 509
TasI	AATT	4 cut(s)	13, 217, 362, 398
TfiI	GAWTC	2 cut(s)	387, 488
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	78, 199
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	92, 106, 161
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	302, 492
TspRI	CASTG	2 cut(s)	78, 199
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	2 cut(s)	165, 375
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.