FvH4_2g41130

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
29158609 .. 29163873
5265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41130.t4

Sequence Viewer

Length: 1845 bp
ATGAAGTTTATGAAGTTAGGGTCCAAGCCTGATGCGTTTCAAGCTGACGGCAAGTCGATCAGATATGTAACATCTGAGTTGGAATCCGATGTCGTCGTCAAGGTTGGGGAAGTTCAATTTTACCTTCACAAGTTCCCTCTCCTGTCCAAGAGTAATCGCTTGCAAAAACTAGTACCTAAATCCAATGAGGATAAAGTCGTCGAAGTTTGCATGGATGATTTCCCTGGTGGTGCGAATTCCTTTGAAGTCTGTGCAAAATTTTGCTATGGAATGACTGTTACTCTCAATGCTTACAATGTTGTGGCTGCTCGTTGTGGTGCTGAGTATCTGGAGATGACTGAGGATGTTGATCGCAGTAACCTGATATATAAAATCGAAGTATTCCTGAATTCAAGTATATTTCGTAGCTGGAAAGATACCATTAATGTTCTCCAAACAACCAAACCTCTTCTGTCATGGTCTGAGGATCTGAAAATTGTCGGAAGATGCATAGATTCAATTGCTTCTAAAACTTCTGTGGACCCTGCAAATATCAGCTGGTCCTACACACACAACCGCAAATTAGCAGAGCCTGATAAAATTACTGAAGAAGGGACTAATTATCGAGACAAAATGGAAAATATTCCAAGGGATTGGTGGGTTGAAGATATATGTGAGCTAGATATTGATCTCTACAAGCGTGTCATGATTGCTGTGAAATCAAAAGGAAGAATGAATGGTGCCGTTATAGGGGAGGCTCTGAAAACTTATGCACTTAGATGGTTGCCAGACTCTGTTGACGCGTTGATTTCTGAAGATCATGCATTGAGGAACAAATCTCTAATAGAAACTATTATTTGTTTACTGCCATCTGACAAAGGTGTGGGTTGTTCATGCAGTTTCTTGCTGAAACTTTTGAAAGTTAGTACTTTGGTTGGAGCAGATGAGTCATTGAGGGAGGTTCTGGTGAACAGGATTGGCTTGAAGTTACATGAAGCTCGTGTTAGTGATTTATTGATCCCTGCTCGGTTTCCTCAAATTACTATTTATGATGTTGAATTGGTTCAGTCCATTGTGAATCGGTTTGTGATACATGAAAAGAGTAACTGGGATCTGGATGTTGTTCGGAAGAATGAAAAGGGTACTGATAATTTGATCTTGGGGCATGGATCCTTGGTGGGTGTTGGTAGACTGATTGATGGGTATCTTGCCGAAATTGCACATGACCCTAATCTTAACCTTGGTAGTTTCATAGACTTGTCACAATCGCTTCCCGAGTTAGCGAGGCCAATTCATGATGGATTGTACAAAGCCATTGACATCTACCTGAAGGAGCACCCTAGTCTGACAAAAGCGGAGAGGAAAAGAATATGTGGATTAATGGATGTCAAGAAGCTGACAATGGAGGCATCTATGGATGCTGCACAGAACGAGCGGCTTCCACTGCGAGTTGTTGTCCAAGTTCTCTTTTTTGAGCAGGTGAGATCTTCAGCTGCTTCTCGGTCCCTTAACAACCACCAATCTGATGGTTCACAGTCCACCACAAATTTCGATGAAGAGTGTCACAACACAGCAGAAGAAAACTGCAAACCTCTAGGAAAACAGCTGAGGCAAATGAAGGTGAGCGAAGAGTTGCAGAAGAATGGGAGATTGGGTAAGAAGAACAGCAAGAACAGCAGAAGTGGTGCGCAGTTGTTGCCATCTAGGTCAAGAAGGATATTTGATAAGTTATGGTCTGTGGGGAAAGGGGGGCATGTAGAGAACAAGAGTTCGGAGACTTCTGGGAGTTCTCAGAGCCCAACTTCAATAGTTCCTGGTGATTCAAAGTTAGTTTCATCAAGACACAGGAGGCATTCTATCTCGTAG

Protein Analysis

615

Amino Acids

68.82

Weight (kDa)

8.29

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 141 - 394 7.3e-85 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1447
Acc16I TGCGCA 1 cut(s) 1668
Acc36I ACCTGC 1 cut(s) 1447
AccB1I GGYRCC 1 cut(s) 719
AccBSI CCGCTC 1 cut(s) 1414
AccI GTMKAC 1 cut(s) 1168
AccII CGCG 1 cut(s) 782
AciI CCGC 3 cut(s) 556, 1334, 1414
AclWI GGATC 5 cut(s) 474, 991, 1098, 1143, 1156
AcsI RAATTY 4 cut(s) 235, 257, 388, 1525
AcuI CTGAAG 4 cut(s) 606, 813, 1328, 1452
AfaI GTAC 4 cut(s) 174, 907, 1123, 1286
AfiI CCNNNNNNNGG 1 cut(s) 729
AflIII ACRYGT 1 cut(s) 780
AhdI GACNNNNNGTC 1 cut(s) 52
AhlI ACTAGT 1 cut(s) 169
AjnI CCWGG 2 cut(s) 223, 1792
AjuI GAANNNNNNNTTGG 2 cut(s) 1613, 1645
AluBI AGCT 8 cut(s) 44, 408, 537, 658, 977, 1375, 1472, 1585
AluI AGCT 8 cut(s) 44, 408, 537, 658, 977, 1375, 1472, 1585
Alw21I GWGCWC 1 cut(s) 1317
Alw26I GTCTC 2 cut(s) 600, 1748
AlwI GGATC 5 cut(s) 474, 991, 1098, 1143, 1156
AlwNI CAGNNNCTG 2 cut(s) 572, 773
Ama87I CYCGRG 1 cut(s) 1253
AoxI GGCC 1 cut(s) 1265
ApeKI GCWGC 3 cut(s) 305, 1400, 1472
ApoI RAATTY 4 cut(s) 235, 257, 388, 1525
AseI ATTAAT 2 cut(s) 423, 1358
Asp700I GAANNNNTTC 2 cut(s) 621, 1041
AspLEI GCGC 1 cut(s) 1669
AspS9I GGNCC 4 cut(s) 21, 520, 540, 1482
AsuHPI GGTGA 4 cut(s) 958, 1471, 1612, 1808
AvaI CYCGRG 1 cut(s) 1253
AvaII GGWCC 4 cut(s) 21, 520, 540, 1482
BamHI GGATCC 1 cut(s) 1148
BanI GGYRCC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 1778
BauI CACGAG 1 cut(s) 978
Bbv12I GWGCWC 1 cut(s) 1317
BbvCI CCTCAGC 1 cut(s) 1586
BbvI GCAGC 3 cut(s) 292, 1387, 1459
BccI CCATC 6 cut(s) 753, 856, 1172, 1271, 1499, 1687
BceAI ACGGC 2 cut(s) 64, 707
BciT130I CCWGG 2 cut(s) 225, 1794
BcoDI GTCTC 2 cut(s) 600, 1748
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 5 cut(s) 170, 659, 1320, 1574, 1683
BfuAI ACCTGC 1 cut(s) 1447
BglII AGATCT 1 cut(s) 1463
BisI GCNGC 4 cut(s) 306, 1401, 1415, 1473
BlsI GCNGC 4 cut(s) 307, 1402, 1416, 1474
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 2 cut(s) 225, 1794
Bme18I GGWCC 4 cut(s) 21, 520, 540, 1482
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 1253
BmgT120I GGNCC 4 cut(s) 21, 520, 540, 1482
BmiI GGNNCC 5 cut(s) 22, 522, 721, 1150, 1484
BmrFI CCNGG 2 cut(s) 225, 1794
BmrI ACTGGG 1 cut(s) 1096
BmsI GCATC 4 cut(s) 22, 476, 1387, 1397
BmuI ACTGGG 1 cut(s) 1096
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 1586
BsaBI GATNNNNATC 3 cut(s) 348, 666, 1182
BsaJI CCNNGG 4 cut(s) 223, 626, 1152, 1219
BsaXI ACNNNNNCTCC 2 cut(s) 1618, 1648
Bsc4I CCNNNNNNNGG 1 cut(s) 729
Bse1I ACTGG 1 cut(s) 1091
Bse8I GATNNNNATC 3 cut(s) 348, 666, 1182
BseBI CCWGG 2 cut(s) 225, 1794
BseDI CCNNGG 4 cut(s) 223, 626, 1152, 1219
BseGI GGATG 5 cut(s) 220, 349, 1102, 1369, 1402
BseJI GATNNNNATC 3 cut(s) 348, 666, 1182
BseLI CCNNNNNNNGG 1 cut(s) 729
BseMII CTCAG 6 cut(s) 66, 312, 330, 453, 1577, 1784
BseNI ACTGG 1 cut(s) 1091
BseXI GCAGC 3 cut(s) 292, 1387, 1459
BsgI GTGCAG 1 cut(s) 1386
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 1 cut(s) 1267
BshNI GGYRCC 1 cut(s) 719
BsiHKAI GWGCWC 1 cut(s) 1317
BsiHKCI CYCGRG 1 cut(s) 1253
BslFI GGGAC 2 cut(s) 607, 1468
BslI CCNNNNNNNGG 1 cut(s) 729
BsmAI GTCTC 2 cut(s) 600, 1748
BsmFI GGGAC 2 cut(s) 607, 1468
BsmI GAATGC 1 cut(s) 1831
BsnI GGCC 1 cut(s) 1267
BsoBI CYCGRG 1 cut(s) 1253
Bsp1286I GDGCHC 2 cut(s) 1317, 1778
Bsp1407I TGTACA 1 cut(s) 1284
BspACI CCGC 3 cut(s) 556, 1334, 1414
BspANI GGCC 1 cut(s) 1267
BspCNI CTCAG 6 cut(s) 67, 313, 331, 454, 1578, 1783
BspFNI CGCG 1 cut(s) 782
BspHI TCATGA 2 cut(s) 684, 1273
BspLI GGNNCC 5 cut(s) 22, 522, 721, 1150, 1484
BspMI ACCTGC 1 cut(s) 1447
BspPI GGATC 5 cut(s) 474, 991, 1098, 1143, 1156
BspT107I GGYRCC 1 cut(s) 719
BsrBI CCGCTC 1 cut(s) 1414
BsrGI TGTACA 1 cut(s) 1284
BsrI ACTGG 1 cut(s) 1091
BssECI CCNNGG 4 cut(s) 223, 626, 1152, 1219
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 3 cut(s) 626, 1152, 1219
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 2 cut(s) 225, 1794
Bst4CI ACNGT 2 cut(s) 277, 1515
Bst6I CTCTTC 3 cut(s) 453, 1530, 1602
BstAPI GCANNNNNTGC 1 cut(s) 1675
BstAUI TGTACA 1 cut(s) 1284
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 7 cut(s) 75, 321, 339, 462, 755, 1586, 1770
BstF5I GGATG 5 cut(s) 220, 349, 1102, 1369, 1402
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 1 cut(s) 1669
BstMAI GTCTC 2 cut(s) 600, 1748
BstMWI GCNNNNNNNGC 5 cut(s) 41, 1196, 1423, 1653, 1675
BstNI CCWGG 2 cut(s) 225, 1794
BstNSI RCATGY 1 cut(s) 1736
BstSCI CCNGG 2 cut(s) 223, 1792
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 3 cut(s) 292, 1387, 1459
BstX2I RGATCY 4 cut(s) 466, 1090, 1148, 1463
BstXI CCANNNNNNTGG 2 cut(s) 633, 1505
BstYI RGATCY 4 cut(s) 466, 1090, 1148, 1463
BsuRI GGCC 1 cut(s) 1267
BtsCI GGATG 5 cut(s) 220, 349, 1102, 1369, 1402
BtsI GCAGTG 1 cut(s) 1421
BtsIMutI CAGTG 1 cut(s) 1421
BveI ACCTGC 1 cut(s) 1447
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 2 cut(s) 572, 773
CciI TCATGA 2 cut(s) 684, 1273
CfoI GCGC 1 cut(s) 1669
Cfr13I GGNCC 4 cut(s) 21, 520, 540, 1482
CseI GACGC 1 cut(s) 788
Csp6I GTAC 4 cut(s) 173, 906, 1122, 1285
CviQI GTAC 4 cut(s) 173, 906, 1122, 1285
DdeI CTNAG 7 cut(s) 75, 321, 339, 462, 755, 1586, 1770
DriI GACNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 453, 1530, 1602
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 3 cut(s) 453, 1530, 1602
Eco130I CCWWGG 3 cut(s) 626, 1152, 1219
Eco24I GRGCYC 1 cut(s) 1778
Eco47I GGWCC 4 cut(s) 21, 520, 540, 1482
Eco57I CTGAAG 4 cut(s) 606, 813, 1328, 1452
Eco88I CYCGRG 1 cut(s) 1253
EcoRI GAATTC 2 cut(s) 235, 388
EcoRII CCWGG 2 cut(s) 223, 1792
EcoT14I CCWWGG 3 cut(s) 626, 1152, 1219
EcoT22I ATGCAT 2 cut(s) 491, 805
EcoT38I GRGCYC 1 cut(s) 1778
ErhI CCWWGG 3 cut(s) 626, 1152, 1219
FaqI GGGAC 2 cut(s) 607, 1468
FblI GTMKAC 1 cut(s) 1168
Fnu4HI GCNGC 4 cut(s) 306, 1401, 1415, 1473
FokI GGATG 5 cut(s) 227, 356, 1109, 1376, 1409
FriOI GRGCYC 1 cut(s) 1778
Fsp4HI GCNGC 4 cut(s) 306, 1401, 1415, 1473
FspBI CTAG 5 cut(s) 170, 659, 1320, 1574, 1683
FspI TGCGCA 1 cut(s) 1668
GlaI GCGC 1 cut(s) 1668
GluI GCNGC 4 cut(s) 306, 1401, 1415, 1473
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 1 cut(s) 1267
HgaI GACGC 1 cut(s) 788
HhaI GCGC 1 cut(s) 1669
Hin6I GCGC 1 cut(s) 1667
HinP1I GCGC 1 cut(s) 1667
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 6 cut(s) 83, 494, 770, 926, 1057, 1799
HphI GGTGA 4 cut(s) 958, 1471, 1612, 1808
Hpy166II GTNNAC 7 cut(s) 520, 778, 842, 949, 1169, 1511, 1518
Hpy8I GTNNAC 7 cut(s) 520, 778, 842, 949, 1169, 1511, 1518
Hpy99I CGWCG 2 cut(s) 98, 203
HpyAV CCTTC 5 cut(s) 134, 584, 1303, 1591, 1686
HpyCH4III ACNGT 2 cut(s) 277, 1515
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 1196, 1423, 1653, 1675
HpyF3I CTNAG 7 cut(s) 75, 321, 339, 462, 755, 1586, 1770
HspAI GCGC 1 cut(s) 1667
LmnI GCTCC 2 cut(s) 917, 1312
Lsp1109I GCAGC 3 cut(s) 292, 1387, 1459
LweI GCATC 4 cut(s) 22, 476, 1387, 1397
MaeI CTAG 5 cut(s) 170, 659, 1320, 1574, 1683
MaeIII GTNAC 7 cut(s) 67, 277, 356, 966, 1082, 1239, 1541
MbiI CCGCTC 1 cut(s) 1414
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 4 cut(s) 466, 1090, 1148, 1463
MhlI GDGCHC 2 cut(s) 1317, 1778
MluI ACGCGT 1 cut(s) 780
MlyI GAGTC 2 cut(s) 764, 935
MmeI TCCRAC 3 cut(s) 60, 460, 895
Mph1103I ATGCAT 2 cut(s) 491, 805
MroXI GAANNNNTTC 2 cut(s) 621, 1041
MseI TTAA 4 cut(s) 423, 1215, 1358, 1488
MslI CAYNNNNRTG 1 cut(s) 757
MspA1I CMGCKG 3 cut(s) 537, 1472, 1585
MspR9I CCNGG 2 cut(s) 225, 1794
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 1831
MvaI CCWGG 2 cut(s) 225, 1794
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 5 cut(s) 41, 1196, 1423, 1653, 1675
NlaIV GGNNCC 5 cut(s) 22, 522, 721, 1150, 1484
NmuCI GTSAC 2 cut(s) 1239, 1541
NsbI TGCGCA 1 cut(s) 1668
NsiI ATGCAT 2 cut(s) 491, 805
NspI RCATGY 1 cut(s) 1736
PagI TCATGA 2 cut(s) 684, 1273
PaqCI CACCTGC 1 cut(s) 1447
PctI GAATGC 1 cut(s) 1831
PdmI GAANNNNTTC 2 cut(s) 621, 1041
PfeI GAWTC 4 cut(s) 83, 494, 1057, 1799
PkrI GCNGC 4 cut(s) 307, 1402, 1416, 1474
PleI GAGTC 2 cut(s) 764, 934
PpsI GAGTC 2 cut(s) 764, 934
PshBI ATTAAT 2 cut(s) 423, 1358
Psp6I CCWGG 2 cut(s) 223, 1792
PspGI CCWGG 2 cut(s) 223, 1792
PspN4I GGNNCC 5 cut(s) 22, 522, 721, 1150, 1484
PspPI GGNCC 4 cut(s) 21, 520, 540, 1482
PstNI CAGNNNCTG 2 cut(s) 572, 773
PsuI RGATCY 4 cut(s) 466, 1090, 1148, 1463
PvuII CAGCTG 3 cut(s) 537, 1472, 1585
RsaI GTAC 4 cut(s) 174, 907, 1123, 1286
RsaNI GTAC 4 cut(s) 173, 906, 1122, 1285
RseI CAYNNNNRTG 1 cut(s) 757
SaqAI TTAA 4 cut(s) 423, 1215, 1358, 1488
SatI GCNGC 4 cut(s) 306, 1401, 1415, 1473
Sau96I GGNCC 4 cut(s) 21, 520, 540, 1482
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 2 cut(s) 764, 935
ScrFI CCNGG 2 cut(s) 225, 1794
SduI GDGCHC 2 cut(s) 1317, 1778
SfaNI GCATC 4 cut(s) 22, 476, 1387, 1397
SinI GGWCC 4 cut(s) 21, 520, 540, 1482
SmiMI CAYNNNNRTG 1 cut(s) 757
SpeI ACTAGT 1 cut(s) 169
SsiI CCGC 3 cut(s) 556, 1334, 1414
SspI AATATT 1 cut(s) 622
SspMI CTAG 5 cut(s) 170, 659, 1320, 1574, 1683
StyD4I CCNGG 2 cut(s) 223, 1792
StyI CCWWGG 3 cut(s) 626, 1152, 1219
TaaI ACNGT 2 cut(s) 277, 1515
TaqI TCGA 5 cut(s) 56, 201, 375, 604, 1530
TaqII GACCGA 1 cut(s) 1470
TatI WGTACW 2 cut(s) 905, 1284
TauI GCSGC 1 cut(s) 1417
TfiI GAWTC 4 cut(s) 83, 494, 1057, 1799
Tru1I TTAA 4 cut(s) 423, 1215, 1358, 1488
Tru9I TTAA 4 cut(s) 423, 1215, 1358, 1488
TscAI CASTG 1 cut(s) 1428
TseFI GTSAC 2 cut(s) 1239, 1541
TseI GCWGC 3 cut(s) 305, 1400, 1472
Tsp45I GTSAC 2 cut(s) 1239, 1541
TspRI CASTG 1 cut(s) 1428
VpaK11BI GGWCC 4 cut(s) 21, 520, 540, 1482
VspI ATTAAT 2 cut(s) 423, 1358
XapI RAATTY 4 cut(s) 235, 257, 388, 1525
XceI RCATGY 1 cut(s) 1736
XcmI CCANNNNNNNNNTGG 2 cut(s) 633, 1502
XmiI GTMKAC 1 cut(s) 1168
XmnI GAANNNNTTC 2 cut(s) 621, 1041
XspI CTAG 5 cut(s) 170, 659, 1320, 1574, 1683
ZrmI AGTACT 1 cut(s) 907
Zsp2I ATGCAT 2 cut(s) 491, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.