Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314217.1

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Reverse (-)

247 .. 732

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314217.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggatgccaagaaactgacaatggaggcatccatggatgctgcacagaacgagcagcttccactgcgagttgttgtccaagttctcttttttgagcaggtgagatcttcagctgctgctcggtcccttaacaaccatccatccgatgcttcacattccaccacaaatttggatgaagaatgtgacaagacagcagaagaaaactgcaagcctttaggaaaacagctgagtcaaatgaaggcaagcgaagagttgcagaagaatgggaaattgggtaagaagaacagcaagaatagtagaagtggtgcgcagttgttgccgtctaggtcaaggaggatatttgacaagttatggtctgtggggaagggggggcatggagagaacaagagctcggagacttctgggagttctcagagccctacttctatagttcctggtgattccaagtctgtttcatcgagacacaggaggcattctatatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

9.61

Isoelectric Point (pI)

67.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc16I	TGCGCA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	4 cut(s)	58, 113, 226, 390
AluI	AGCT	4 cut(s)	58, 113, 226, 390
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	389, 454
AlwNI	CAGNNNCTG	1 cut(s)	116
ApeKI	GCWGC	4 cut(s)	41, 55, 113, 116
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	112, 449
AvaII	GGWCC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	392, 419
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	4 cut(s)	28, 67, 100, 103
BccI	CCATC	2 cut(s)	144, 148
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	389, 454
BfaI	CTAG	2 cut(s)	324, 484
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	4 cut(s)	42, 56, 114, 117
BlsI	GCNGC	4 cut(s)	43, 57, 115, 118
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	28, 38, 136
BsaJI	CCNNGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	6 cut(s)	10, 29, 43, 136, 140, 178
BseMII	CTCAG	2 cut(s)	218, 425
BseXI	GCAGC	4 cut(s)	28, 67, 100, 103
BsgI	GTGCAG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	389, 454
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	472
Bsp1286I	GDGCHC	2 cut(s)	392, 419
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	219, 424
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	209, 244
BstDEI	CTNAG	2 cut(s)	227, 411
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	6 cut(s)	10, 29, 43, 136, 140, 178
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	389, 454
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 316
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	28, 67, 100, 103
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	6 cut(s)	10, 29, 43, 136, 140, 178
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	209, 244
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	2 cut(s)	34, 374
CviJI	RGCY	6 cut(s)	58, 113, 211, 226, 390, 417
CviKI_1	RGCY	6 cut(s)	58, 113, 211, 226, 390, 417
DdeI	CTNAG	2 cut(s)	227, 411
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	392, 419
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	2 cut(s)	392, 419
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 377
FaiI	YATR	5 cut(s)	35, 352, 375, 428, 479
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	33, 373
Fnu4HI	GCNGC	4 cut(s)	42, 56, 114, 117
FokI	GGATG	6 cut(s)	16, 17, 50, 123, 127, 185
FriOI	GRGCYC	2 cut(s)	392, 419
Fsp4HI	GCNGC	4 cut(s)	42, 56, 114, 117
FspBI	CTAG	2 cut(s)	324, 484
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	42, 56, 114, 117
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	37, 377
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	2 cut(s)	229, 440
HphI	GGTGA	2 cut(s)	112, 449
Hpy188I	TCNGA	3 cut(s)	145, 394, 414
Hpy188III	TCNNGA	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	232, 358
HpyCH4V	TGCA	3 cut(s)	44, 207, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 316
HpyF3I	CTNAG	2 cut(s)	227, 411
Hsp92II	CATG	2 cut(s)	37, 377
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	5 cut(s)	83, 387, 420, 447, 451
Lsp1109I	GCAGC	4 cut(s)	28, 67, 100, 103
LweI	GCATC	3 cut(s)	28, 38, 136
MaeI	CTAG	2 cut(s)	324, 484
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	6 cut(s)	99, 188, 209, 260, 271, 292
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	392, 419
MluCI	AATT	2 cut(s)	166, 269
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	19, 327, 462
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	113, 226
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	64, 316
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	37, 377
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	182
NsbI	TGCGCA	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	43, 57, 115, 118
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	2 cut(s)	113, 226
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	42, 56, 114, 117
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	392, 419
SetI	ASST	6 cut(s)	60, 102, 115, 228, 329, 392
SfaNI	GCATC	3 cut(s)	28, 38, 136
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	166, 269
SspMI	CTAG	2 cut(s)	324, 484
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	458
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	166, 269
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	41, 55, 113, 116
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	189, 251, 444
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XspI	CTAG	2 cut(s)	324, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.