Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007597

Physical Location & Seq

Genomic Coordinates Forward (+)

59857405 .. 59861891

Gene Structure 4487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGGGAAAAGCACCAAGCTCGAGGAGGCGGTGCTGGTATCATAAGCCCACACCACCCCTGCTGTCTGTCCCTGTCTCTCTCTCAGTCTCTGTCCCTGTCTCAGTCTCTGTCTCGCTCCAAAATTTATGGTCTTCCCTTCTCTTCTGGTTGCGTGTTTTAGAGAGAAACACAAGCATTCGAGGAACTAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGCTCCATTCCTGGTCTTCAAGAGTTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAAACTCGACATTTGCCGCTGCTTAATTCGGACGAAACGGAGCCCGTCTTTGTGTAGCTCTCTACTCCTACTCTTCTCAAGACTTGTTTCCGTAATTTGTGGTGGCTTAGAAGGGCATTTTGGGGTCAAGATGAAGTTTATGAAGTTAGGGTCCAAGCCTGATGCGTTTCAAGCTGATGGCAAGTTGATCAGATTTGTAACATCTGAGTTGGATTCAGATGTCATCGTAAAGGTTGGGGAAGTGCAATTTTACCTTCACAAGTTCCCTCTCCTTTCCAAGAGTAATCGCTTGCAAAAACTAGTACCTAAAGCCAATGAGGAGAAAGTTGTCGAAGTTTGCATGGATGATTTCCCTGGTGGGGCAAATTCCTTTGAAATCTGTGCAAAATTTTGCTATGGAATGACTGTTACTCTCAATGCTTACAATGTTGTGGCAGCTCGTTGTGCCGCTGAGTATCTGGAGATGACCGAGGATGTTGATCGCAGTAACCTGATATATAAAATTGAAGTATTCCTGAATTCGAGTATATTTCGTAGCTGGAAAGATACCATTATTGTTCTCCAAACCACCAAACCTCTTCTGTCATGGTCCGAGGATCTGAAGATTGTCGGAAGATGCATAGATTCAATCGCTTCTAAAACTTCTGTCGACCCTGCAAATATCAGCTGGTCCTACACATACAACCGAAAATTAACAGAGCCTGATAAAATTATTGAAGAAGGGATTAATTATCGAGACAAAATGGAAAATATTCCAAGGGATTGGTGGGTTGAAGATATATGTGAGCTAGATATTGATCTCTACAGGCGTGTCATGATTGCTGTGAAATCAAAAGGAAGAATGGATGGTGCTGTTATTGGGGAGGCTCTGAAAACTTATGCACTTAGATGGTTGCCAGATTCTGTTGATGTGTTGATTTCTGATGATCATGCATTGAGAAACAAATCTCTGGTAGAAACTATTATTTGTTTATTGCCATCTGACAAAGGTGTGGGTTGTTCATGCAGTTTCCTGCTGAAACTTTTGAAAGTTAGTACTTTGGTTGGAGCAGATGAGTCATTGAGGGAGGTTCTGGTTAACTGGATTGGTTTGAAGTTACCTGAAGCTCGTGTTGGTGATTTATTGATCCCTGCTCGGTCTCCTCAAATTACTATTTATGATGTTGAATTGGTTCAGTCCATTGTGAATCGGTTTGTGATACATGAAAAGAGTAACTGGGATTTAGATGTTGTTCGGAAGAATGAAAAGGGTACTGATAATTTTATCTTGGGGCATGGATCCTTGGTGGGTGTTGGTAGACTGATTGATGGGTATCTTGCCGAAATTGCTCATGACCCTAATCTTAACCTTAGTAGTTTCATAGACTTGTCACAATTGCTTCCCGAGCTAGCGAGGCCAATTCATGATGGATTGTACAAAGCCATTGATATCTACCTGAAGGAGCACCCTAGTCTGACAAAGGCTGAAAGGAAAAGAATATGTGGATTAATGGATGTCAAGAAACTGACGATGGAGGCATCCATGGATGCTGCACAGAACGAGCAGCTTCCACTGCGAGTTGTTGTCCAAGTTCTCTTTTTTGAGCAGGTGAGATCTTCAGCTGCTGCTCGGTCCCTTAACAACCATCCATCCGATGCTTCACATTCCACCACAAATTTGGATGAAGAATGTGACAAGACAGCAGAAGAAAACTGCAAACCTTTAGGAAAACAGCTGAGTCAAATGAAGGCGAGCGAAGAGTTGCAGAAGAATGGGAAATTGGGTAAGAAGAACAGCAAGAATAGTAGAAGTGGTGCGCAGTTGTTGCCGTCTAGGTCAAGGAGGATATTTGACAAGTTATGGTCTGTGGGGAAGGGGGGGCATGGAGAGAACAAGAGCTCGGAGACTTCTGGGAGTTCTCAGAGCCCAACTTCTATAGTTCCTGGTGATTCCAAGTCTGTTTCATCGAGACACAGGAGGCATTCTATATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005886 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009911 GO:0009914 GO:0009926 GO:0010154 GO:0010229 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0022414 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045176 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090567 GO:0097708 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

747

Amino Acids

84.04

Weight (kDa)

8.82

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	344 - 597	1.2e-82	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31820 AT4G31820
fragaria_vesca	FvH4_2g41130 FvH4_2g41130 FvH4_2g41130 FvH4_2g41130
malus_domestica	MD08G1057100.v1.1 MD15G1040500.v1.1 MD15G1040600.v1.1
prunus_persica	Prupe.1G393800_v2.0.a1
pyrus_communis	pycom08g04650 pycom08g04660 pycom15g03780
rosa_chinensis	RchiOBHm_Chr5g0077711 RchiOBHm_Chr6g0299411
rosa_laevigata	RLG00000011434
rosa_multiflora	Rmu_co8314217.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168710
rosa_rugosa	Rorug06G0288000
rosa_samantha	Rh6AG399800 Rh6BG408200 Rh6CG413900 Rh6DG400900
rosa_wichuraiana	Rw6G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1846
Acc16I	TGCGCA	1 cut(s)	2067
Acc36I	ACCTGC	1 cut(s)	1846
AccBSI	CCGCTC	1 cut(s)	219
AccI	GTMKAC	2 cut(s)	918, 1567
AciI	CCGC	4 cut(s)	28, 217, 286, 717
AclWI	GGATC	4 cut(s)	873, 1390, 1542, 1555
AcsI	RAATTY	5 cut(s)	121, 634, 656, 787, 1924
AcuI	CTGAAG	4 cut(s)	890, 1392, 1727, 1851
AfaI	GTAC	4 cut(s)	573, 1306, 1522, 1685
AfiI	CCNNNNNNNGG	1 cut(s)	628
AhlI	ACTAGT	1 cut(s)	568
AjnI	CCWGG	3 cut(s)	226, 622, 2191
AjuI	GAANNNNNNNTTGG	6 cut(s)	372, 404, 1365, 1397, 2012, 2044
Alw21I	GWGCWC	2 cut(s)	1716, 2150
AlwI	GGATC	4 cut(s)	873, 1390, 1542, 1555
AlwNI	CAGNNNCTG	5 cut(s)	89, 107, 971, 1172, 1874
Ama87I	CYCGRG	2 cut(s)	19, 1652
AoxI	GGCC	1 cut(s)	1664
ApeKI	GCWGC	6 cut(s)	288, 704, 1799, 1813, 1871, 1874
ApoI	RAATTY	5 cut(s)	121, 634, 656, 787, 1924
AseI	ATTAAT	2 cut(s)	996, 1757
Asp700I	GAANNNNTTC	2 cut(s)	1020, 1440
AspLEI	GCGC	1 cut(s)	2068
AspS9I	GGNCC	4 cut(s)	420, 858, 939, 1881
AsuHPI	GGTGA	3 cut(s)	1397, 1870, 2207
AsuNHI	GCTAGC	1 cut(s)	1657
AvaI	CYCGRG	2 cut(s)	19, 1652
AvaII	GGWCC	4 cut(s)	420, 858, 939, 1881
BamHI	GGATCC	1 cut(s)	1547
BanII	GRGCYC	3 cut(s)	314, 2150, 2177
BauI	CACGAG	1 cut(s)	1377
BbsI	GAAGAC	2 cut(s)	123, 224
Bbv12I	GWGCWC	2 cut(s)	1716, 2150
BbvI	GCAGC	6 cut(s)	275, 716, 1786, 1825, 1858, 1861
BccI	CCATC	9 cut(s)	440, 1109, 1152, 1255, 1571, 1670, 1774, 1902, 1906
BceAI	ACGGC	1 cut(s)	2062
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	3 cut(s)	228, 624, 2193
BclI	TGATCA	2 cut(s)	456, 1195
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	7 cut(s)	186, 569, 1058, 1658, 1719, 2082, 2242
BfmI	CTRYAG	2 cut(s)	1072, 2184
BfuAI	ACCTGC	1 cut(s)	1846
BglII	AGATCT	1 cut(s)	1862
BisI	GCNGC	8 cut(s)	286, 289, 705, 717, 1800, 1814, 1872, 1875
BlsI	GCNGC	8 cut(s)	287, 290, 706, 718, 1801, 1815, 1873, 1876
BmcAI	AGTACT	1 cut(s)	1306
Bme1390I	CCNGG	3 cut(s)	228, 624, 2193
Bme18I	GGWCC	4 cut(s)	420, 858, 939, 1881
BmeT110I	CYCGRG	2 cut(s)	19, 1652
BmgT120I	GGNCC	4 cut(s)	420, 858, 939, 1881
BmiI	GGNNCC	4 cut(s)	311, 421, 1549, 1883
BmrFI	CCNGG	3 cut(s)	228, 624, 2193
BmrI	ACTGGG	1 cut(s)	1495
BmsI	GCATC	5 cut(s)	421, 875, 1786, 1796, 1894
BmtI	GCTAGC	1 cut(s)	1661
BmuI	ACTGGG	1 cut(s)	1495
BpiI	GAAGAC	2 cut(s)	123, 224
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	331
BsaBI	GATNNNNATC	3 cut(s)	747, 1065, 1581
BsaI	GGTCTC	2 cut(s)	207, 1413
BsaJI	CCNNGG	6 cut(s)	622, 738, 861, 1025, 1551, 1791
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	1355, 1490
Bse8I	GATNNNNATC	3 cut(s)	747, 1065, 1581
BseBI	CCWGG	3 cut(s)	228, 624, 2193
BseDI	CCNNGG	6 cut(s)	622, 738, 861, 1025, 1551, 1791
BseGI	GGATG	9 cut(s)	619, 748, 1120, 1768, 1787, 1801, 1894, 1898, 1936
BseJI	GATNNNNATC	3 cut(s)	747, 1065, 1581
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	6 cut(s)	96, 114, 465, 711, 1976, 2183
BseNI	ACTGG	2 cut(s)	1355, 1490
BseRI	GAGGAG	3 cut(s)	37, 602, 1401
BseXI	GCAGC	6 cut(s)	275, 716, 1786, 1825, 1858, 1861
BsgI	GTGCAG	1 cut(s)	1785
BshFI	GGCC	1 cut(s)	1666
BsiHKAI	GWGCWC	2 cut(s)	1716, 2150
BsiHKCI	CYCGRG	2 cut(s)	19, 1652
BslFI	GGGAC	3 cut(s)	53, 77, 1867
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmFI	GGGAC	3 cut(s)	53, 77, 1867
BsmI	GAATGC	2 cut(s)	174, 2230
BsnI	GGCC	1 cut(s)	1666
Bso31I	GGTCTC	2 cut(s)	207, 1413
BsoBI	CYCGRG	2 cut(s)	19, 1652
Bsp1286I	GDGCHC	4 cut(s)	314, 1716, 2150, 2177
Bsp1407I	TGTACA	1 cut(s)	1683
Bsp143I	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
Bsp19I	CCATGG	1 cut(s)	1791
BspACI	CCGC	4 cut(s)	28, 217, 286, 717
BspANI	GGCC	1 cut(s)	1666
BspCNI	CTCAG	6 cut(s)	95, 113, 466, 712, 1977, 2182
BspHI	TCATGA	3 cut(s)	1083, 1600, 1672
BspLI	GGNNCC	4 cut(s)	311, 421, 1549, 1883
BspMI	ACCTGC	1 cut(s)	1846
BspOI	GCTAGC	1 cut(s)	1661
BspPI	GGATC	4 cut(s)	873, 1390, 1542, 1555
BspTNI	GGTCTC	2 cut(s)	207, 1413
BsrBI	CCGCTC	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	1683
BsrI	ACTGG	2 cut(s)	1355, 1490
BssECI	CCNNGG	6 cut(s)	622, 738, 861, 1025, 1551, 1791
BssMI	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
BssSI	CACGAG	1 cut(s)	1377
BssT1I	CCWWGG	3 cut(s)	1025, 1551, 1791
Bst2BI	CACGAG	1 cut(s)	1377
Bst2UI	CCWGG	3 cut(s)	228, 624, 2193
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	4 cut(s)	146, 347, 852, 2001
BstAPI	GCANNNNNTGC	1 cut(s)	2074
BstAUI	TGTACA	1 cut(s)	1683
BstC8I	GCNNGC	3 cut(s)	560, 1659, 2002
BstDEI	CTNAG	9 cut(s)	82, 100, 376, 474, 720, 1154, 1619, 1985, 2169
BstDSI	CCRYGG	1 cut(s)	1791
BstF5I	GGATG	9 cut(s)	619, 748, 1120, 1768, 1787, 1801, 1894, 1898, 1936
BstHHI	GCGC	1 cut(s)	2068
BstKTI	GATC	8 cut(s)	459, 751, 868, 1069, 1198, 1398, 1550, 1865
BstMBI	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
BstMWI	GCNNNNNNNGC	7 cut(s)	440, 713, 1595, 1654, 1663, 1822, 2074
BstNI	CCWGG	3 cut(s)	228, 624, 2193
BstSCI	CCNGG	3 cut(s)	226, 622, 2191
BstSFI	CTRYAG	2 cut(s)	1072, 2184
BstV1I	GCAGC	6 cut(s)	275, 716, 1786, 1825, 1858, 1861
BstV2I	GAAGAC	2 cut(s)	123, 224
BstX2I	RGATCY	3 cut(s)	865, 1547, 1862
BstXI	CCANNNNNNTGG	2 cut(s)	1032, 1927
BstYI	RGATCY	3 cut(s)	865, 1547, 1862
BsuRI	GGCC	1 cut(s)	1666
BtgI	CCRYGG	1 cut(s)	1791
BtsCI	GGATG	9 cut(s)	619, 748, 1120, 1768, 1787, 1801, 1894, 1898, 1936
BtsI	GCAGTG	1 cut(s)	1820
BtsIMutI	CAGTG	1 cut(s)	1820
BveI	ACCTGC	1 cut(s)	1846
Cac8I	GCNNGC	3 cut(s)	560, 1659, 2002
CaiI	CAGNNNCTG	5 cut(s)	89, 107, 971, 1172, 1874
CciI	TCATGA	3 cut(s)	1083, 1600, 1672
CfoI	GCGC	1 cut(s)	2068
Cfr13I	GGNCC	4 cut(s)	420, 858, 939, 1881
Csp6I	GTAC	4 cut(s)	572, 1305, 1521, 1684
CviQI	GTAC	4 cut(s)	572, 1305, 1521, 1684
DdeI	CTNAG	9 cut(s)	82, 100, 376, 474, 720, 1154, 1619, 1985, 2169
DpnI	GATC	8 cut(s)	458, 750, 867, 1068, 1197, 1397, 1549, 1864
DpnII	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
Eam1104I	CTCTTC	4 cut(s)	146, 347, 852, 2001
EarI	CTCTTC	4 cut(s)	146, 347, 852, 2001
Ecl136II	GAGCTC	1 cut(s)	2148
Eco130I	CCWWGG	3 cut(s)	1025, 1551, 1791
Eco24I	GRGCYC	3 cut(s)	314, 2150, 2177
Eco31I	GGTCTC	2 cut(s)	207, 1413
Eco32I	GATATC	1 cut(s)	1699
Eco47I	GGWCC	4 cut(s)	420, 858, 939, 1881
Eco53kI	GAGCTC	1 cut(s)	2148
Eco57I	CTGAAG	4 cut(s)	890, 1392, 1727, 1851
Eco88I	CYCGRG	2 cut(s)	19, 1652
EcoICRI	GAGCTC	1 cut(s)	2148
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	226, 622, 2191
EcoRV	GATATC	1 cut(s)	1699
EcoT14I	CCWWGG	3 cut(s)	1025, 1551, 1791
EcoT22I	ATGCAT	2 cut(s)	890, 1204
EcoT38I	GRGCYC	3 cut(s)	314, 2150, 2177
ErhI	CCWWGG	3 cut(s)	1025, 1551, 1791
FaqI	GGGAC	3 cut(s)	53, 77, 1867
FbaI	TGATCA	2 cut(s)	456, 1195
FblI	GTMKAC	2 cut(s)	918, 1567
Fnu4HI	GCNGC	8 cut(s)	286, 289, 705, 717, 1800, 1814, 1872, 1875
FokI	GGATG	9 cut(s)	626, 755, 1127, 1774, 1775, 1808, 1881, 1885, 1943
FriOI	GRGCYC	3 cut(s)	314, 2150, 2177
Fsp4HI	GCNGC	8 cut(s)	286, 289, 705, 717, 1800, 1814, 1872, 1875
FspBI	CTAG	7 cut(s)	186, 569, 1058, 1658, 1719, 2082, 2242
FspI	TGCGCA	1 cut(s)	2067
GlaI	GCGC	1 cut(s)	2067
GluI	GCNGC	8 cut(s)	286, 289, 705, 717, 1800, 1814, 1872, 1875
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	1666
HhaI	GCGC	1 cut(s)	2068
Hin6I	GCGC	1 cut(s)	2066
HinP1I	GCGC	1 cut(s)	2066
HincII	GTYRAC	2 cut(s)	919, 1348
HindII	GTYRAC	2 cut(s)	919, 1348
HinfI	GANTC	7 cut(s)	482, 893, 1169, 1325, 1456, 1987, 2198
HpaI	GTTAAC	1 cut(s)	1348
HphI	GGTGA	3 cut(s)	1397, 1870, 2207
Hpy166II	GTNNAC	3 cut(s)	919, 1348, 1568
Hpy8I	GTNNAC	3 cut(s)	919, 1348, 1568
HpyAV	CCTTC	7 cut(s)	146, 374, 533, 983, 1702, 1990, 2116
HpyCH4III	ACNGT	1 cut(s)	676
HpyF10VI	GCNNNNNNNGC	7 cut(s)	440, 713, 1595, 1654, 1663, 1822, 2074
HpyF3I	CTNAG	9 cut(s)	82, 100, 376, 474, 720, 1154, 1619, 1985, 2169
HspAI	GCGC	1 cut(s)	2066
Ksp22I	TGATCA	2 cut(s)	456, 1195
KspAI	GTTAAC	1 cut(s)	1348
Kzo9I	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
LmnI	GCTCC	5 cut(s)	120, 224, 309, 1316, 1711
Lsp1109I	GCAGC	6 cut(s)	275, 716, 1786, 1825, 1858, 1861
LweI	GCATC	5 cut(s)	421, 875, 1786, 1796, 1894
MaeI	CTAG	7 cut(s)	186, 569, 1058, 1658, 1719, 2082, 2242
MaeIII	GTNAC	7 cut(s)	466, 676, 755, 1365, 1481, 1638, 1940
MalI	GATC	8 cut(s)	458, 750, 867, 1068, 1197, 1397, 1549, 1864
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
MfeI	CAATTG	1 cut(s)	1643
MflI	RGATCY	3 cut(s)	865, 1547, 1862
MhlI	GDGCHC	4 cut(s)	314, 1716, 2150, 2177
MlyI	GAGTC	2 cut(s)	1334, 1996
MmeI	TCCRAC	3 cut(s)	459, 859, 1294
Mph1103I	ATGCAT	2 cut(s)	890, 1204
MroXI	GAANNNNTTC	2 cut(s)	1020, 1440
MseI	TTAA	7 cut(s)	293, 962, 996, 1347, 1614, 1757, 1887
MslI	CAYNNNNRTG	1 cut(s)	1156
MspA1I	CMGCKG	5 cut(s)	288, 719, 936, 1871, 1984
MspR9I	CCNGG	3 cut(s)	228, 624, 2193
MunI	CAATTG	1 cut(s)	1643
Mva1269I	GAATGC	2 cut(s)	174, 2230
MvaI	CCWGG	3 cut(s)	228, 624, 2193
MwoI	GCNNNNNNNGC	7 cut(s)	440, 713, 1595, 1654, 1663, 1822, 2074
NcoI	CCATGG	1 cut(s)	1791
NdeII	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
NheI	GCTAGC	1 cut(s)	1657
NlaIV	GGNNCC	4 cut(s)	311, 421, 1549, 1883
NmuCI	GTSAC	2 cut(s)	1638, 1940
NsbI	TGCGCA	1 cut(s)	2067
NsiI	ATGCAT	2 cut(s)	890, 1204
PaeR7I	CTCGAG	1 cut(s)	19
PagI	TCATGA	3 cut(s)	1083, 1600, 1672
PaqCI	CACCTGC	1 cut(s)	1846
PctI	GAATGC	2 cut(s)	174, 2230
PdmI	GAANNNNTTC	2 cut(s)	1020, 1440
PfeI	GAWTC	5 cut(s)	482, 893, 1169, 1456, 2198
PkrI	GCNGC	8 cut(s)	287, 290, 706, 718, 1801, 1815, 1873, 1876
PleI	GAGTC	2 cut(s)	1333, 1995
PpsI	GAGTC	2 cut(s)	1333, 1995
PshBI	ATTAAT	2 cut(s)	996, 1757
Psp124BI	GAGCTC	1 cut(s)	2150
Psp6I	CCWGG	3 cut(s)	226, 622, 2191
PspGI	CCWGG	3 cut(s)	226, 622, 2191
PspN4I	GGNNCC	4 cut(s)	311, 421, 1549, 1883
PspPI	GGNCC	4 cut(s)	420, 858, 939, 1881
PspXI	VCTCGAGB	1 cut(s)	19
PstNI	CAGNNNCTG	5 cut(s)	89, 107, 971, 1172, 1874
PsuI	RGATCY	3 cut(s)	865, 1547, 1862
PvuII	CAGCTG	3 cut(s)	936, 1871, 1984
RsaI	GTAC	4 cut(s)	573, 1306, 1522, 1685
RsaNI	GTAC	4 cut(s)	572, 1305, 1521, 1684
RseI	CAYNNNNRTG	1 cut(s)	1156
SacI	GAGCTC	1 cut(s)	2150
SalI	GTCGAC	1 cut(s)	917
SaqAI	TTAA	7 cut(s)	293, 962, 996, 1347, 1614, 1757, 1887
SatI	GCNGC	8 cut(s)	286, 289, 705, 717, 1800, 1814, 1872, 1875
Sau3AI	GATC	8 cut(s)	456, 748, 865, 1066, 1195, 1395, 1547, 1862
Sau96I	GGNCC	4 cut(s)	420, 858, 939, 1881
ScaI	AGTACT	1 cut(s)	1306
SchI	GAGTC	2 cut(s)	1334, 1996
ScrFI	CCNGG	3 cut(s)	228, 624, 2193
SduI	GDGCHC	4 cut(s)	314, 1716, 2150, 2177
SfaNI	GCATC	5 cut(s)	421, 875, 1786, 1796, 1894
SfcI	CTRYAG	2 cut(s)	1072, 2184
Sfr274I	CTCGAG	1 cut(s)	19
SinI	GGWCC	4 cut(s)	420, 858, 939, 1881
SlaI	CTCGAG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	1156
SmlI	CTYRAG	2 cut(s)	19, 346
SmoI	CTYRAG	2 cut(s)	19, 346
SpeI	ACTAGT	1 cut(s)	568
SsiI	CCGC	4 cut(s)	28, 217, 286, 717
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	7 cut(s)	186, 569, 1058, 1658, 1719, 2082, 2242
SstI	GAGCTC	1 cut(s)	2150
StyD4I	CCNGG	3 cut(s)	226, 622, 2191
StyI	CCWWGG	3 cut(s)	1025, 1551, 1791
TaaI	ACNGT	1 cut(s)	676
TaqI	TCGA	8 cut(s)	20, 178, 276, 600, 791, 918, 1003, 2216
TaqII	GACCGA	3 cut(s)	752, 1395, 1869
TatI	WGTACW	2 cut(s)	1304, 1683
TauI	GCSGC	2 cut(s)	288, 719
TfiI	GAWTC	5 cut(s)	482, 893, 1169, 1456, 2198
Tru1I	TTAA	7 cut(s)	293, 962, 996, 1347, 1614, 1757, 1887
Tru9I	TTAA	7 cut(s)	293, 962, 996, 1347, 1614, 1757, 1887
TscAI	CASTG	1 cut(s)	1827
TseFI	GTSAC	2 cut(s)	1638, 1940
TseI	GCWGC	6 cut(s)	288, 704, 1799, 1813, 1871, 1874
Tsp45I	GTSAC	2 cut(s)	1638, 1940
TspGWI	ACGGA	2 cut(s)	322, 349
TspRI	CASTG	1 cut(s)	1827
VpaK11BI	GGWCC	4 cut(s)	420, 858, 939, 1881
VspI	ATTAAT	2 cut(s)	996, 1757
XapI	RAATTY	5 cut(s)	121, 634, 656, 787, 1924
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1032, 1924
XhoI	CTCGAG	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	918, 1567
XmnI	GAANNNNTTC	2 cut(s)	1020, 1440
XspI	CTAG	7 cut(s)	186, 569, 1058, 1658, 1719, 2082, 2242
ZrmI	AGTACT	1 cut(s)	1306
Zsp2I	ATGCAT	2 cut(s)	890, 1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.