Rh6BG408300

phospholipase d

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
63421114 .. 63423596
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG408300.1

Sequence Viewer

Length: 1593 bp
ATGATATATACACAGTTACGCAGTCGAGATAAGAGAAAGATGAAAGTCATTCACAGTCGCATTATCGTCGTCATCGTTTTGGTTTTAGTCAACCTTTCTTTGCTACCCGTCTCTGAATGTTCAGGTTCGGCGAAATGCAAAGCATGGCTGGTCCAATCAATCCCCACCGACATGCCGGGTCTCCGTCGTGTCCCTGGTGTCCTCTCCACCGCGGATGTGTTCCGGTGGCTGGCGCGGAACTCATCACAGAGACTGGACATAATTGCTCAGTACTGGCAGTTTGTAGCCAATCCTAAAGACCCTCAATCTGGAGATTTTGGATACTCAAAACAGGACATGAAGAGATTTGGAGCTCACCAAGGTGCTTCTGTTTATGGCGCCATAGATGATGCTGCTAATCGCAATCTTACTATCAGGCTGCTATCACACTCGGGTGTATATCCTGACTACACCAAAGAGCCTTCCAAACTTGCTTCAGGAAGGCCCAATGTGAAGAATGTCACTTTGTTACTTAGTGAATGGTGGGGTTCTGGCATAGTCCATGCCAAAGTTTGGATATCAGATCGGCGAGATGTGTATATTGGGTCTGCAAACAATGACTGGAAATCTCTCACACAAGTCAAGGAAGTTGGAATTTATCTTGCTGGTTGTCCAAAAATAGCGAGAAAGGTTGAGACCTACTTTGACAACCTGTGGAAACTTGCATCTCTTAATTCTACAGCTTACACAACAAATGTATCAGATAAACAGTGGCAGACCGAGAGACAAGTTCCTTGCTGGTCGCATTTCGTGGATTCTAAAGCAAGGTGTAGTTCACCTCTCCCTGGGATTGTGGAGACTGACCATGTAGCAGGATACCCCATACTGTCAGACCCTCATATGTTCAAAATGCAGCTCCAGACTCCTGGACATAATGAGTCAAGTTTGCAACCCCAATCCAGCTATCTATCTTTTGCTCCTCCAGAGCTGTCATTTGGCAAGTACCAGGCAGATGAACAAGCATGGATAGAGACTATTAAATCTGTAGGAAGTGGAGGGACTGTCAGGATTAGTACCATGGACTGGCTTGGTCAGTCCCAGTTTATGAAGCATACAATTTATTGGGCATCCCTCTCCTCTGCAATATCAGAGGTTGCGTTTGCAAAGAATGCAACAGTGAAGTTATTGGTAGCACACTGGGCACATTTTATCAACAGCACAGATCAATACCTGAAATCTCTCCTCTACTCTAATGTTCTCTGCAATTCATCCGAGTATAACCACTGTTCTGGGAAAGTTGAGATCAAGTATTATATGGTCCCAGGTTTCAACTCAACAGGACCTGCCAGAACTGGCAATGGTACTCATACTGGAAATATATACCCTGGTTACACCAGGGTTAACCATGGCAAGTATGCAGTAAGCGATGTTCGAGCCCATATTGGGACGAGCAATCTTGTGTGGGATTACTTTTATACAACAGCGGGTGTCAGCTTTGGTACAAATAACTCTGCCATTGTTTCACAACTTCAACAAGTCTTTGATGCTGACTGGGATTCGGAATATGCTGTGCCAGTTGATGAGTTGGGGGAAGGTAATGCTTTTTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

530

Amino Acids

59.04

Weight (kDa)

8.81

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLDc_2 PF13091 122 - 232 2.3e-10 PLD-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014680)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1330
AccB1I GGYRCC 1 cut(s) 377
AccB7I CCANNNNNTGG 2 cut(s) 552, 1062
AccII CGCG 2 cut(s) 212, 235
AciI CCGC 4 cut(s) 210, 212, 235, 1463
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 5 cut(s) 272, 983, 1054, 1342, 1480
AfiI CCNNNNNNNGG 6 cut(s) 229, 308, 552, 824, 1062, 1422
AgsI TTSAA 4 cut(s) 886, 1309, 1511, 1587
AjnI CCWGG 7 cut(s) 193, 823, 904, 984, 1300, 1363, 1373
AleI CACNNNNGTG 2 cut(s) 360, 432
AluBI AGCT 7 cut(s) 353, 722, 895, 942, 967, 1473, 1590
AluI AGCT 7 cut(s) 353, 722, 895, 942, 967, 1473, 1590
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 7 cut(s) 115, 185, 244, 668, 757, 830, 1004
AlwNI CAGNNNCTG 2 cut(s) 253, 1322
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 392, 418, 892
ApoI RAATTY 1 cut(s) 633
AspLEI GCGC 2 cut(s) 235, 380
AspS9I GGNCC 4 cut(s) 151, 483, 1297, 1319
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 347, 807
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 3 cut(s) 151, 1297, 1319
BaeGI GKGCMC 1 cut(s) 1183
BaeI ACNNNNGTAYC 2 cut(s) 720, 753
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 355, 1417
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 3 cut(s) 379, 405, 904
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 7 cut(s) 195, 825, 906, 986, 1302, 1365, 1375
BciVI GTATCC 2 cut(s) 314, 848
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 7 cut(s) 115, 185, 244, 668, 757, 830, 1004
BfmI CTRYAG 2 cut(s) 717, 1023
BfoI RGCGCY 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 1330
BfuI GTATCC 2 cut(s) 314, 848
BisI GCNGC 3 cut(s) 393, 419, 893
BlsI GCNGC 3 cut(s) 394, 420, 894
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 8 cut(s) 177, 195, 825, 906, 986, 1302, 1365, 1375
Bme18I GGWCC 3 cut(s) 151, 1297, 1319
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 4 cut(s) 151, 483, 1297, 1319
BmiI GGNNCC 2 cut(s) 379, 1299
BmrFI CCNGG 8 cut(s) 177, 195, 825, 906, 986, 1302, 1365, 1375
BmrI ACTGGG 3 cut(s) 1072, 1186, 1540
BmsI GCATC 4 cut(s) 379, 713, 1115, 1513
BmuI ACTGGG 3 cut(s) 1072, 1186, 1540
BpmI CTGGAG 3 cut(s) 330, 881, 945
BpuMI CCSGG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 2 cut(s) 185, 668
BsaWI WCCGGW 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 6 cut(s) 229, 308, 552, 824, 1062, 1422
Bse3DI GCAATG 1 cut(s) 1342
BseBI CCWGG 7 cut(s) 195, 825, 906, 986, 1302, 1365, 1375
BseGI GGATG 3 cut(s) 220, 1106, 1247
BseLI CCNNNNNNNGG 6 cut(s) 229, 308, 552, 824, 1062, 1422
BseMI GCAATG 1 cut(s) 1342
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 3 cut(s) 948, 1105, 1211
BseSI GKGCMC 1 cut(s) 1183
BseXI GCAGC 3 cut(s) 379, 405, 904
Bsh1236I CGCG 2 cut(s) 212, 235
BshFI GGCC 1 cut(s) 484
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 2 cut(s) 176, 223
BslFI GGGAC 5 cut(s) 176, 1051, 1060, 1283, 1438
BslI CCNNNNNNNGG 6 cut(s) 229, 308, 552, 824, 1062, 1422
BsmAI GTCTC 7 cut(s) 115, 185, 244, 668, 757, 830, 1004
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 5 cut(s) 176, 1051, 1060, 1283, 1438
BsmI GAATGC 1 cut(s) 1153
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 2 cut(s) 185, 668
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 3 cut(s) 355, 1183, 1417
Bsp143I GATC 3 cut(s) 562, 1201, 1281
Bsp19I CCATGG 2 cut(s) 1056, 1384
BspACI CCGC 4 cut(s) 210, 212, 235, 1463
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 2 cut(s) 212, 235
BspLI GGNNCC 2 cut(s) 379, 1299
BspMI ACCTGC 1 cut(s) 1330
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 2 cut(s) 185, 668
BsrDI GCAATG 1 cut(s) 1342
BssMI GATC 3 cut(s) 562, 1201, 1281
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 358, 1056, 1384
Bst2UI CCWGG 7 cut(s) 195, 825, 906, 986, 1302, 1365, 1375
Bst4CI ACNGT 7 cut(s) 15, 56, 750, 867, 1042, 1156, 1265
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 267, 512
BstDSI CCRYGG 3 cut(s) 210, 1056, 1384
BstF5I GGATG 3 cut(s) 220, 1106, 1247
BstFNI CGCG 2 cut(s) 212, 235
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 235, 380
BstKTI GATC 3 cut(s) 565, 1204, 1284
BstMAI GTCTC 7 cut(s) 115, 185, 244, 668, 757, 830, 1004
BstMBI GATC 3 cut(s) 562, 1201, 1281
BstMWI GCNNNNNNNGC 2 cut(s) 1148, 1178
BstNI CCWGG 7 cut(s) 195, 825, 906, 986, 1302, 1365, 1375
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 8 cut(s) 175, 193, 823, 904, 984, 1300, 1363, 1373
BstSFI CTRYAG 2 cut(s) 717, 1023
BstSLI GKGCMC 1 cut(s) 1183
BstUI CGCG 2 cut(s) 212, 235
BstV1I GCAGC 3 cut(s) 379, 405, 904
BstXI CCANNNNNNTGG 2 cut(s) 905, 1268
BsuI GTATCC 2 cut(s) 314, 848
BsuRI GGCC 1 cut(s) 484
BtgI CCRYGG 3 cut(s) 210, 1056, 1384
BtgZI GCGATG 1 cut(s) 1419
BtsCI GGATG 3 cut(s) 220, 1106, 1247
BtsIMutI CAGTG 4 cut(s) 755, 1161, 1174, 1261
BveI ACCTGC 1 cut(s) 1330
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 2 cut(s) 253, 1322
CfoI GCGC 2 cut(s) 235, 380
Cfr13I GGNCC 4 cut(s) 151, 483, 1297, 1319
Cfr42I CCGCGG 1 cut(s) 213
Csp6I GTAC 5 cut(s) 271, 982, 1053, 1341, 1479
CviAII CATG 8 cut(s) 144, 172, 337, 542, 845, 1002, 1057, 1385
CviQI GTAC 5 cut(s) 271, 982, 1053, 1341, 1479
DdeI CTNAG 2 cut(s) 267, 512
DinI GGCGCC 1 cut(s) 379
DpnI GATC 3 cut(s) 564, 1203, 1283
DpnII GATC 3 cut(s) 562, 1201, 1281
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 3 cut(s) 358, 1056, 1384
Eco24I GRGCYC 2 cut(s) 355, 1417
Eco31I GGTCTC 2 cut(s) 185, 668
Eco32I GATATC 1 cut(s) 558
Eco47I GGWCC 3 cut(s) 151, 1297, 1319
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 1319
EcoRII CCWGG 7 cut(s) 193, 823, 904, 984, 1300, 1363, 1373
EcoRV GATATC 1 cut(s) 558
EcoT14I CCWWGG 3 cut(s) 358, 1056, 1384
EcoT38I GRGCYC 2 cut(s) 355, 1417
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 3 cut(s) 358, 1056, 1384
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 8 cut(s) 147, 175, 340, 545, 848, 1005, 1060, 1388
FaqI GGGAC 5 cut(s) 176, 1051, 1060, 1283, 1438
FatI CATG 8 cut(s) 143, 171, 336, 541, 844, 1001, 1056, 1384
FauI CCCGC 1 cut(s) 1456
FauNDI CATATG 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 393, 419, 893
FokI GGATG 3 cut(s) 227, 1093, 1234
FriOI GRGCYC 2 cut(s) 355, 1417
Fsp4HI GCNGC 3 cut(s) 393, 419, 893
GlaI GCGC 2 cut(s) 234, 379
GluI GCNGC 3 cut(s) 393, 419, 893
GsuI CTGGAG 3 cut(s) 330, 881, 945
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 1 cut(s) 484
HapII CCGG 2 cut(s) 176, 223
HhaI GCGC 2 cut(s) 235, 380
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 8 cut(s) 147, 175, 340, 545, 848, 1005, 1060, 1388
Hin6I GCGC 2 cut(s) 233, 378
HinP1I GCGC 2 cut(s) 233, 378
HincII GTYRAC 2 cut(s) 91, 1381
HindII GTYRAC 2 cut(s) 91, 1381
HinfI GANTC 4 cut(s) 794, 901, 917, 1535
HpaI GTTAAC 1 cut(s) 1381
HpaII CCGG 2 cut(s) 176, 223
HphI GGTGA 2 cut(s) 347, 807
Hpy166II GTNNAC 3 cut(s) 91, 815, 1381
Hpy188I TCNGA 7 cut(s) 115, 562, 742, 871, 1129, 1252, 1540
Hpy188III TCNNGA 7 cut(s) 26, 309, 443, 477, 898, 962, 1045
Hpy8I GTNNAC 3 cut(s) 91, 815, 1381
Hpy99I CGWCG 2 cut(s) 71, 189
HpyAV CCTTC 3 cut(s) 471, 474, 1565
HpyCH4III ACNGT 7 cut(s) 15, 56, 750, 867, 1042, 1156, 1265
HpyF10VI GCNNNNNNNGC 2 cut(s) 1148, 1178
HpyF3I CTNAG 2 cut(s) 267, 512
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 8 cut(s) 147, 175, 340, 545, 848, 1005, 1060, 1388
HspAI GCGC 2 cut(s) 233, 378
KasI GGCGCC 1 cut(s) 377
KspAI GTTAAC 1 cut(s) 1381
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 3 cut(s) 562, 1201, 1281
LmnI GCTCC 3 cut(s) 350, 900, 961
Lsp1109I GCAGC 3 cut(s) 379, 405, 904
LweI GCATC 4 cut(s) 379, 713, 1115, 1513
MaeIII GTNAC 4 cut(s) 15, 499, 507, 1367
MalI GATC 3 cut(s) 564, 1203, 1283
MboI GATC 3 cut(s) 562, 1201, 1281
MboII GAAGA 2 cut(s) 352, 505
MhlI GDGCHC 3 cut(s) 355, 1183, 1417
MluCI AATT 5 cut(s) 261, 633, 712, 1095, 1243
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 2 cut(s) 895, 926
MmeI TCCRAC 1 cut(s) 610
MseI TTAA 3 cut(s) 711, 1017, 1380
MslI CAYNNNNRTG 3 cut(s) 170, 360, 432
MspA1I CMGCKG 2 cut(s) 212, 1463
MspI CCGG 2 cut(s) 176, 223
MspR9I CCNGG 8 cut(s) 177, 195, 825, 906, 986, 1302, 1365, 1375
Mva1269I GAATGC 1 cut(s) 1153
MvaI CCWGG 7 cut(s) 195, 825, 906, 986, 1302, 1365, 1375
MvnI CGCG 2 cut(s) 212, 235
MwoI GCNNNNNNNGC 2 cut(s) 1148, 1178
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 2 cut(s) 1056, 1384
NdeI CATATG 1 cut(s) 879
NdeII GATC 3 cut(s) 562, 1201, 1281
NlaIII CATG 8 cut(s) 147, 175, 340, 545, 848, 1005, 1060, 1388
NlaIV GGNNCC 2 cut(s) 379, 1299
NmuCI GTSAC 1 cut(s) 499
NspI RCATGY 1 cut(s) 175
OliI CACNNNNGTG 2 cut(s) 360, 432
PasI CCCWGGG 1 cut(s) 824
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 1153
PfeI GAWTC 2 cut(s) 794, 1535
PflMI CCANNNNNTGG 2 cut(s) 552, 1062
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 3 cut(s) 394, 420, 894
PleI GAGTC 2 cut(s) 895, 925
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 2 cut(s) 895, 925
PpuMI RGGWCCY 1 cut(s) 1319
Psp124BI GAGCTC 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 1319
Psp6I CCWGG 7 cut(s) 193, 823, 904, 984, 1300, 1363, 1373
PspGI CCWGG 7 cut(s) 193, 823, 904, 984, 1300, 1363, 1373
PspN4I GGNNCC 2 cut(s) 379, 1299
PspPI GGNCC 4 cut(s) 151, 483, 1297, 1319
PspPPI RGGWCCY 1 cut(s) 1319
PsrI GAACNNNNNNTAC 2 cut(s) 1392, 1424
PstNI CAGNNNCTG 2 cut(s) 253, 1322
RsaI GTAC 5 cut(s) 272, 983, 1054, 1342, 1480
RsaNI GTAC 5 cut(s) 271, 982, 1053, 1341, 1479
RseI CAYNNNNRTG 3 cut(s) 170, 360, 432
SacI GAGCTC 1 cut(s) 355
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 711, 1017, 1380
SatI GCNGC 3 cut(s) 393, 419, 893
Sau3AI GATC 3 cut(s) 562, 1201, 1281
Sau96I GGNCC 4 cut(s) 151, 483, 1297, 1319
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 2 cut(s) 895, 926
ScrFI CCNGG 8 cut(s) 177, 195, 825, 906, 986, 1302, 1365, 1375
SduI GDGCHC 3 cut(s) 355, 1183, 1417
SfaNI GCATC 4 cut(s) 379, 713, 1115, 1513
SfcI CTRYAG 2 cut(s) 717, 1023
SfoI GGCGCC 1 cut(s) 379
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SinI GGWCC 3 cut(s) 151, 1297, 1319
SmiMI CAYNNNNRTG 3 cut(s) 170, 360, 432
Sse9I AATT 5 cut(s) 261, 633, 712, 1095, 1243
SsiI CCGC 4 cut(s) 210, 212, 235, 1463
SspDI GGCGCC 1 cut(s) 377
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 8 cut(s) 175, 193, 823, 904, 984, 1300, 1363, 1373
StyI CCWWGG 3 cut(s) 358, 1056, 1384
TaaI ACNGT 7 cut(s) 15, 56, 750, 867, 1042, 1156, 1265
TaqI TCGA 2 cut(s) 25, 1411
TaqII GACCGA 1 cut(s) 773
TasI AATT 5 cut(s) 261, 633, 712, 1095, 1243
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 2 cut(s) 794, 1535
Tru1I TTAA 3 cut(s) 711, 1017, 1380
Tru9I TTAA 3 cut(s) 711, 1017, 1380
TscAI CASTG 4 cut(s) 755, 1161, 1181, 1268
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 3 cut(s) 392, 418, 892
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 5 cut(s) 56, 353, 1008, 1100, 1236
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 4 cut(s) 755, 1161, 1181, 1268
Van91I CCANNNNNTGG 2 cut(s) 552, 1062
VpaK11BI GGWCC 3 cut(s) 151, 1297, 1319
XapI RAATTY 1 cut(s) 633
XceI RCATGY 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.