RchiOBHm_Chr6g0299421

phospholipase d

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
60499951 .. 60502729
2779 bp
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UTR
Exon/CDS
Intron
PRQ26886

Sequence Viewer

Length: 1629 bp
ATGCCTATTGTTGTATTTGTGCACAAACGGTATAATGATACACAGACACAGTTACGCAGTCGAGATAAGAGAAAGATGAAAGTCATTCACAGTCGCATTATCGTCGTCATCGTTTGGGTTTTAGTCAACCTTTCTTTGCTACCCGTCTCTGAATGTTCAGGTTCGGCGAAATGCAAAGCATGGCTGGTCCAATCAATCCCCACCGACATGCCGGGTCTCCGTCGTGTCCCTGGTGTCCTCTCCACCGCGGATGTGTTCCGGTGGCTGGCGCGGAACTCATCACAGAGACTGGACATAATTGCTCAGTACTGGCAGTTTGAAGCCAATCCTAAAGACCCTCAATCTGGAGATTTTGGATACTCAAAACAGGACATGAAGAGATTTGGAGCTCACCAAGGTGCTTCCGTTTATGGCGCCATTGATGATGCTGCTAATCGCAATCTTACTATCAGGCTACTATCACACTCAGGTGTATATCCTGACTACACCAAAGAGCCTTCCAAACTTGCTTCAGGAAGGCCCAATGTGAAGAATGTCACTTTGTTACTTAGTGAATGGTGGGGTTCTGGCATAGTCCATGCCAAAGTTTGGATATCAGATCGGCGAGATGTGTATATTGGGTCTGCAAACAATGACTGGAAATCTCTCACACAAGTCAAGGAAGTTGGAATTTATCTTGCTGCTTGTCCAAAAATAGCGAGAAAGGTTGAGACCTACTTTGACAACCTGTGGAAACTTGCATCTCTTAATTCTACAGCTTACACAACAAATGTATCAGATAAACAGTGGCAGACCGAGAGACAAGTTCCTTGCTGGTCGCATTTCGTGGATTCTAAAGCAAGGTGTAGTTCACCTCTCCCTGGGATTGTGGAGACTGACCATGTAGCAGGATACCCCATACTGTCAGACCCTCATATGTTCAAAATGCAGCTCCAGACTCCTGGACATAATTATTCAAGTTTGCAACCCCAATCCAGCTATCTATCTTTTGCTCCTCCAGAGCTGTCATTTGGCAAGTACCAGGCAGATGAACAAGCATGGATAGAGACTATTAAATCTGTAGGAAGTGGAGGGACAGTCAGGATTAGTACCATGGACTGGCTTGGTCAGTCCCAGTTTATGAAGCATACAATTTATTGGGCATCCCTCTCCTCTGCAATATCAGAGGTTGTGTTTGCAAAGAATGCAACATTGAAGTTATTGGTAGCACACTGGGCACATTTTATCAACAGCACAGATCAATACCTGAAATCTCTCCTCTACTCTAATGTTCTCTGCAATTCATCCGAGTATAACCACTGTTCTGGGAAAGTTGAGATCAAGTATTATATGGTCCCAGGTTTCAACACGACAGGACCTGCCAGAACTGGCAATGGTACTCGTACTGGAAATATATACCCTGGTTACACCAGGGTTAACCATGGCAAGTATGCAGTAAGCGATGTTCGAGCCCATATTGGGACGAGCAATCTTGTGTGGGATTACTTTTATACGACAGCGGGTGTCAGTTTTGGTACAAATAACTCTGCCATTGTTTCACAACTTCAACAAATCTTTGATGCTGACTGGGATTCGGAATATGCTTTGCCAGTTGAAGAGTTGGGGGAAGGTAATGCTTTTTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

60.73

Weight (kDa)

8.96

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLDc_2 PF13091 134 - 244 2.3e-10 PLD-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014680)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1366
AccB1I GGYRCC 1 cut(s) 413
AccB7I CCANNNNNTGG 2 cut(s) 588, 1098
AccII CGCG 2 cut(s) 248, 271
AciI CCGC 4 cut(s) 246, 248, 271, 1499
AcsI RAATTY 1 cut(s) 669
AcuI CTGAAG 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 6 cut(s) 308, 1019, 1090, 1378, 1384, 1516
AfiI CCNNNNNNNGG 6 cut(s) 265, 344, 588, 860, 1098, 1458
AgsI TTSAA 8 cut(s) 320, 922, 957, 1195, 1345, 1547, 1595, 1623
AjnI CCWGG 7 cut(s) 229, 859, 940, 1020, 1336, 1399, 1409
AleI CACNNNNGTG 2 cut(s) 396, 468
AluBI AGCT 6 cut(s) 389, 758, 931, 978, 1003, 1626
AluI AGCT 6 cut(s) 389, 758, 931, 978, 1003, 1626
Alw21I GWGCWC 2 cut(s) 24, 391
Alw26I GTCTC 7 cut(s) 151, 221, 280, 704, 793, 866, 1040
Alw44I GTGCAC 1 cut(s) 20
AlwNI CAGNNNCTG 2 cut(s) 289, 1358
AoxI GGCC 1 cut(s) 518
ApaLI GTGCAC 1 cut(s) 20
ApeKI GCWGC 3 cut(s) 428, 680, 928
ApoI RAATTY 1 cut(s) 669
AspLEI GCGC 2 cut(s) 271, 416
AspS9I GGNCC 4 cut(s) 187, 519, 1333, 1355
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 383, 843
AvaII GGWCC 3 cut(s) 187, 1333, 1355
BaeGI GKGCMC 2 cut(s) 24, 1219
BaeI ACNNNNGTAYC 2 cut(s) 756, 789
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 2 cut(s) 391, 1453
Bbv12I GWGCWC 2 cut(s) 24, 391
BbvI GCAGC 3 cut(s) 415, 667, 940
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 7 cut(s) 231, 861, 942, 1022, 1338, 1401, 1411
BciVI GTATCC 2 cut(s) 350, 884
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 7 cut(s) 151, 221, 280, 704, 793, 866, 1040
BfmI CTRYAG 2 cut(s) 753, 1059
BfoI RGCGCY 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 1366
BfuI GTATCC 2 cut(s) 350, 884
BisI GCNGC 3 cut(s) 429, 681, 929
BlsI GCNGC 3 cut(s) 430, 682, 930
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 8 cut(s) 213, 231, 861, 942, 1022, 1338, 1401, 1411
Bme18I GGWCC 3 cut(s) 187, 1333, 1355
BmgT120I GGNCC 4 cut(s) 187, 519, 1333, 1355
BmiI GGNNCC 2 cut(s) 415, 1335
BmrFI CCNGG 8 cut(s) 213, 231, 861, 942, 1022, 1338, 1401, 1411
BmrI ACTGGG 3 cut(s) 1108, 1222, 1576
BmsI GCATC 4 cut(s) 415, 749, 1151, 1549
BmuI ACTGGG 3 cut(s) 1108, 1222, 1576
BpmI CTGGAG 3 cut(s) 366, 917, 981
BpuMI CCSGG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 414
BsaI GGTCTC 2 cut(s) 221, 704
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 6 cut(s) 265, 344, 588, 860, 1098, 1458
Bse3DI GCAATG 1 cut(s) 1378
BseBI CCWGG 7 cut(s) 231, 861, 942, 1022, 1338, 1401, 1411
BseGI GGATG 3 cut(s) 256, 1142, 1283
BseLI CCNNNNNNNGG 6 cut(s) 265, 344, 588, 860, 1098, 1458
BseMI GCAATG 1 cut(s) 1378
BseMII CTCAG 2 cut(s) 317, 480
BseRI GAGGAG 3 cut(s) 984, 1141, 1247
BseSI GKGCMC 2 cut(s) 24, 1219
BseXI GCAGC 3 cut(s) 415, 667, 940
Bsh1236I CGCG 2 cut(s) 248, 271
BshFI GGCC 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 24, 391
BsiSI CCGG 2 cut(s) 212, 259
BslFI GGGAC 5 cut(s) 212, 1087, 1096, 1319, 1474
BslI CCNNNNNNNGG 6 cut(s) 265, 344, 588, 860, 1098, 1458
BsmAI GTCTC 7 cut(s) 151, 221, 280, 704, 793, 866, 1040
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 5 cut(s) 212, 1087, 1096, 1319, 1474
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 1 cut(s) 520
Bso31I GGTCTC 2 cut(s) 221, 704
Bsp1286I GDGCHC 4 cut(s) 24, 391, 1219, 1453
Bsp143I GATC 3 cut(s) 598, 1237, 1317
Bsp19I CCATGG 2 cut(s) 1092, 1420
BspACI CCGC 4 cut(s) 246, 248, 271, 1499
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 2 cut(s) 316, 479
BspFNI CGCG 2 cut(s) 248, 271
BspLI GGNNCC 2 cut(s) 415, 1335
BspMI ACCTGC 1 cut(s) 1366
BspT107I GGYRCC 1 cut(s) 413
BspTNI GGTCTC 2 cut(s) 221, 704
BsrDI GCAATG 1 cut(s) 1378
BssMI GATC 3 cut(s) 598, 1237, 1317
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 3 cut(s) 394, 1092, 1420
Bst2UI CCWGG 7 cut(s) 231, 861, 942, 1022, 1338, 1401, 1411
Bst4CI ACNGT 7 cut(s) 30, 51, 92, 786, 903, 1078, 1301
Bst6I CTCTTC 2 cut(s) 371, 1590
BstACI GRCGYC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 1184
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 303, 466, 548
BstDSI CCRYGG 3 cut(s) 246, 1092, 1420
BstF5I GGATG 3 cut(s) 256, 1142, 1283
BstFNI CGCG 2 cut(s) 248, 271
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 2 cut(s) 271, 416
BstKTI GATC 3 cut(s) 601, 1240, 1320
BstMAI GTCTC 7 cut(s) 151, 221, 280, 704, 793, 866, 1040
BstMBI GATC 3 cut(s) 598, 1237, 1317
BstMWI GCNNNNNNNGC 2 cut(s) 1184, 1214
BstNI CCWGG 7 cut(s) 231, 861, 942, 1022, 1338, 1401, 1411
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 8 cut(s) 211, 229, 859, 940, 1020, 1336, 1399, 1409
BstSFI CTRYAG 2 cut(s) 753, 1059
BstSLI GKGCMC 2 cut(s) 24, 1219
BstUI CGCG 2 cut(s) 248, 271
BstV1I GCAGC 3 cut(s) 415, 667, 940
BstXI CCANNNNNNTGG 2 cut(s) 941, 1304
BsuI GTATCC 2 cut(s) 350, 884
BsuRI GGCC 1 cut(s) 520
BtgI CCRYGG 3 cut(s) 246, 1092, 1420
BtgZI GCGATG 1 cut(s) 1455
BtsCI GGATG 3 cut(s) 256, 1142, 1283
BtsIMutI CAGTG 3 cut(s) 791, 1210, 1297
BveI ACCTGC 1 cut(s) 1366
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 2 cut(s) 289, 1358
CfoI GCGC 2 cut(s) 271, 416
Cfr13I GGNCC 4 cut(s) 187, 519, 1333, 1355
Cfr42I CCGCGG 1 cut(s) 249
Csp6I GTAC 6 cut(s) 307, 1018, 1089, 1377, 1383, 1515
CviAII CATG 8 cut(s) 180, 208, 373, 578, 881, 1038, 1093, 1421
CviQI GTAC 6 cut(s) 307, 1018, 1089, 1377, 1383, 1515
DdeI CTNAG 3 cut(s) 303, 466, 548
DinI GGCGCC 1 cut(s) 415
DpnI GATC 3 cut(s) 600, 1239, 1319
DpnII GATC 3 cut(s) 598, 1237, 1317
Eam1104I CTCTTC 2 cut(s) 371, 1590
EarI CTCTTC 2 cut(s) 371, 1590
Ecl136II GAGCTC 1 cut(s) 389
Eco130I CCWWGG 3 cut(s) 394, 1092, 1420
Eco24I GRGCYC 2 cut(s) 391, 1453
Eco31I GGTCTC 2 cut(s) 221, 704
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 3 cut(s) 187, 1333, 1355
Eco53kI GAGCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 495
EcoICRI GAGCTC 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 1355
EcoRII CCWGG 7 cut(s) 229, 859, 940, 1020, 1336, 1399, 1409
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 3 cut(s) 394, 1092, 1420
EcoT38I GRGCYC 2 cut(s) 391, 1453
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 3 cut(s) 394, 1092, 1420
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 8 cut(s) 183, 211, 376, 581, 884, 1041, 1096, 1424
FaqI GGGAC 5 cut(s) 212, 1087, 1096, 1319, 1474
FatI CATG 8 cut(s) 179, 207, 372, 577, 880, 1037, 1092, 1420
FauI CCCGC 1 cut(s) 1492
FauNDI CATATG 1 cut(s) 915
Fnu4HI GCNGC 3 cut(s) 429, 681, 929
FokI GGATG 3 cut(s) 263, 1129, 1270
FriOI GRGCYC 2 cut(s) 391, 1453
Fsp4HI GCNGC 3 cut(s) 429, 681, 929
GlaI GCGC 2 cut(s) 270, 415
GluI GCNGC 3 cut(s) 429, 681, 929
GsuI CTGGAG 3 cut(s) 366, 917, 981
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 1 cut(s) 520
HapII CCGG 2 cut(s) 212, 259
HhaI GCGC 2 cut(s) 271, 416
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 8 cut(s) 183, 211, 376, 581, 884, 1041, 1096, 1424
Hin6I GCGC 2 cut(s) 269, 414
HinP1I GCGC 2 cut(s) 269, 414
HincII GTYRAC 2 cut(s) 127, 1417
HindII GTYRAC 2 cut(s) 127, 1417
HinfI GANTC 3 cut(s) 830, 937, 1571
HpaI GTTAAC 1 cut(s) 1417
HpaII CCGG 2 cut(s) 212, 259
HphI GGTGA 2 cut(s) 383, 843
Hpy166II GTNNAC 4 cut(s) 22, 127, 851, 1417
Hpy188I TCNGA 7 cut(s) 151, 598, 778, 907, 1165, 1288, 1576
Hpy188III TCNNGA 7 cut(s) 62, 345, 479, 513, 934, 998, 1081
Hpy8I GTNNAC 4 cut(s) 22, 127, 851, 1417
Hpy99I CGWCG 2 cut(s) 107, 225
HpyAV CCTTC 3 cut(s) 507, 510, 1601
HpyCH4III ACNGT 7 cut(s) 30, 51, 92, 786, 903, 1078, 1301
HpyF10VI GCNNNNNNNGC 2 cut(s) 1184, 1214
HpyF3I CTNAG 3 cut(s) 303, 466, 548
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 8 cut(s) 183, 211, 376, 581, 884, 1041, 1096, 1424
HspAI GCGC 2 cut(s) 269, 414
KasI GGCGCC 1 cut(s) 413
KspAI GTTAAC 1 cut(s) 1417
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 3 cut(s) 598, 1237, 1317
LmnI GCTCC 3 cut(s) 386, 936, 997
Lsp1109I GCAGC 3 cut(s) 415, 667, 940
LweI GCATC 4 cut(s) 415, 749, 1151, 1549
MaeIII GTNAC 4 cut(s) 51, 535, 543, 1403
MalI GATC 3 cut(s) 600, 1239, 1319
MboI GATC 3 cut(s) 598, 1237, 1317
MboII GAAGA 3 cut(s) 388, 541, 1607
MhlI GDGCHC 4 cut(s) 24, 391, 1219, 1453
MluCI AATT 6 cut(s) 297, 669, 748, 949, 1131, 1279
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 1 cut(s) 931
MmeI TCCRAC 1 cut(s) 646
MseI TTAA 3 cut(s) 747, 1053, 1416
MslI CAYNNNNRTG 3 cut(s) 206, 396, 468
MspA1I CMGCKG 2 cut(s) 248, 1499
MspI CCGG 2 cut(s) 212, 259
MspR9I CCNGG 8 cut(s) 213, 231, 861, 942, 1022, 1338, 1401, 1411
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 7 cut(s) 231, 861, 942, 1022, 1338, 1401, 1411
MvnI CGCG 2 cut(s) 248, 271
MwoI GCNNNNNNNGC 2 cut(s) 1184, 1214
NarI GGCGCC 1 cut(s) 414
NciI CCSGG 1 cut(s) 213
NcoI CCATGG 2 cut(s) 1092, 1420
NdeI CATATG 1 cut(s) 915
NdeII GATC 3 cut(s) 598, 1237, 1317
NlaIII CATG 8 cut(s) 183, 211, 376, 581, 884, 1041, 1096, 1424
NlaIV GGNNCC 2 cut(s) 415, 1335
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 1 cut(s) 211
OliI CACNNNNGTG 2 cut(s) 396, 468
PasI CCCWGGG 1 cut(s) 860
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 1189
PfeI GAWTC 2 cut(s) 830, 1571
PflMI CCANNNNNTGG 2 cut(s) 588, 1098
PfoI TCCNGGA 1 cut(s) 940
PkrI GCNGC 3 cut(s) 430, 682, 930
PleI GAGTC 1 cut(s) 931
PluTI GGCGCC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 931
PpuMI RGGWCCY 1 cut(s) 1355
Psp124BI GAGCTC 1 cut(s) 391
Psp5II RGGWCCY 1 cut(s) 1355
Psp6I CCWGG 7 cut(s) 229, 859, 940, 1020, 1336, 1399, 1409
PspGI CCWGG 7 cut(s) 229, 859, 940, 1020, 1336, 1399, 1409
PspN4I GGNNCC 2 cut(s) 415, 1335
PspPI GGNCC 4 cut(s) 187, 519, 1333, 1355
PspPPI RGGWCCY 1 cut(s) 1355
PsrI GAACNNNNNNTAC 2 cut(s) 1428, 1460
PstNI CAGNNNCTG 2 cut(s) 289, 1358
RsaI GTAC 6 cut(s) 308, 1019, 1090, 1378, 1384, 1516
RsaNI GTAC 6 cut(s) 307, 1018, 1089, 1377, 1383, 1515
RseI CAYNNNNRTG 3 cut(s) 206, 396, 468
SacI GAGCTC 1 cut(s) 391
SacII CCGCGG 1 cut(s) 249
SaqAI TTAA 3 cut(s) 747, 1053, 1416
SatI GCNGC 3 cut(s) 429, 681, 929
Sau3AI GATC 3 cut(s) 598, 1237, 1317
Sau96I GGNCC 4 cut(s) 187, 519, 1333, 1355
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 8 cut(s) 213, 231, 861, 942, 1022, 1338, 1401, 1411
SduI GDGCHC 4 cut(s) 24, 391, 1219, 1453
SfaNI GCATC 4 cut(s) 415, 749, 1151, 1549
SfcI CTRYAG 2 cut(s) 753, 1059
SfoI GGCGCC 1 cut(s) 415
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 3 cut(s) 187, 1333, 1355
SmiMI CAYNNNNRTG 3 cut(s) 206, 396, 468
Sse9I AATT 6 cut(s) 297, 669, 748, 949, 1131, 1279
SsiI CCGC 4 cut(s) 246, 248, 271, 1499
SspDI GGCGCC 1 cut(s) 413
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 8 cut(s) 211, 229, 859, 940, 1020, 1336, 1399, 1409
StyI CCWWGG 3 cut(s) 394, 1092, 1420
TaaI ACNGT 7 cut(s) 30, 51, 92, 786, 903, 1078, 1301
TaqI TCGA 2 cut(s) 61, 1447
TaqII GACCGA 1 cut(s) 809
TasI AATT 6 cut(s) 297, 669, 748, 949, 1131, 1279
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 2 cut(s) 830, 1571
Tru1I TTAA 3 cut(s) 747, 1053, 1416
Tru9I TTAA 3 cut(s) 747, 1053, 1416
TscAI CASTG 3 cut(s) 791, 1217, 1304
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 3 cut(s) 428, 680, 928
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 5 cut(s) 92, 389, 1044, 1136, 1272
TspGWI ACGGA 2 cut(s) 209, 394
TspRI CASTG 3 cut(s) 791, 1217, 1304
Van91I CCANNNNNTGG 2 cut(s) 588, 1098
VneI GTGCAC 1 cut(s) 20
VpaK11BI GGWCC 3 cut(s) 187, 1333, 1355
XapI RAATTY 1 cut(s) 669
XceI RCATGY 1 cut(s) 211
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.